Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/ff6f471a2567bd706601567e3178a2/aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/9bd7f6623e3cc7c6fd351e821160d7/aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/d8c70ebc5f6001a5051757369dfd5b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/d8c70ebc5f6001a5051757369dfd5b/.command.run
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam ... Finished