Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/60ed2737b146ef18f525f067027e7a/aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/6f85e8eeffce06e3de9620db74e50d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/6f85e8eeffce06e3de9620db74e50d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/0f55d65d70970a51c7e941a8ab0b71/aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference gene model ref_annot.bed ... Done
Loading SAM/BAM file ...  Total 200000 usable reads were sampled