Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/e9a7b55535290711e042623bb0bcf6/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/45add0f7bcde8525bbb516aacf1017/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/45add0f7bcde8525bbb516aacf1017/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/0e14d564c92aee90169d8f43a34879/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (17056654) splicing reads. 264445 splicing junctions. 188740 known splicing junctions. 75705 novel splicing junctions.
sampling 10% (34113309) splicing reads. 322774 splicing junctions. 201345 known splicing junctions. 121429 novel splicing junctions.
sampling 15% (51169964) splicing reads. 364280 splicing junctions. 208295 known splicing junctions. 155985 novel splicing junctions.
sampling 20% (68226619) splicing reads. 397080 splicing junctions. 213053 known splicing junctions. 184027 novel splicing junctions.
sampling 25% (85283274) splicing reads. 423794 splicing junctions. 216331 known splicing junctions. 207463 novel splicing junctions.
sampling 30% (102339929) splicing reads. 446354 splicing junctions. 218892 known splicing junctions. 227462 novel splicing junctions.
sampling 35% (119396584) splicing reads. 465712 splicing junctions. 220924 known splicing junctions. 244788 novel splicing junctions.
sampling 40% (136453239) splicing reads. 482137 splicing junctions. 222562 known splicing junctions. 259575 novel splicing junctions.
sampling 45% (153509894) splicing reads. 496619 splicing junctions. 223888 known splicing junctions. 272731 novel splicing junctions.
sampling 50% (170566549) splicing reads. 509368 splicing junctions. 225074 known splicing junctions. 284294 novel splicing junctions.
sampling 55% (187623204) splicing reads. 520266 splicing junctions. 226064 known splicing junctions. 294202 novel splicing junctions.
sampling 60% (204679859) splicing reads. 529984 splicing junctions. 226899 known splicing junctions. 303085 novel splicing junctions.
sampling 65% (221736514) splicing reads. 538387 splicing junctions. 227586 known splicing junctions. 310801 novel splicing junctions.
sampling 70% (238793169) splicing reads. 545843 splicing junctions. 228232 known splicing junctions. 317611 novel splicing junctions.
sampling 75% (255849824) splicing reads. 552439 splicing junctions. 228769 known splicing junctions. 323670 novel splicing junctions.
sampling 80% (272906479) splicing reads. 558047 splicing junctions. 229171 known splicing junctions. 328876 novel splicing junctions.
sampling 85% (289963134) splicing reads. 562781 splicing junctions. 229560 known splicing junctions. 333221 novel splicing junctions.
sampling 90% (307019789) splicing reads. 566768 splicing junctions. 229861 known splicing junctions. 336907 novel splicing junctions.
sampling 95% (324076444) splicing reads. 570017 splicing junctions. 230123 known splicing junctions. 339894 novel splicing junctions.
sampling 100% (341133099) splicing reads. 572621 splicing junctions. 230325 known splicing junctions. 342296 novel splicing junctions.
null device 
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