File Info

Filename
aih-tih-sc-934f55-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/e92e3a028bac32a1606d5fa104a8f1/aih-tih-sc-934f55-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:40:09
                             Started mapping on |	Jun 08 07:42:07
                                    Finished on |	Jun 08 08:51:41
       Mapping speed, Million of reads per hour |	254.54

                          Number of input reads |	295126865
                      Average input read length |	257
                                    UNIQUE READS:
                   Uniquely mapped reads number |	278450084
                        Uniquely mapped reads % |	94.35%
                          Average mapped length |	256.82
                       Number of splices: Total |	314994907
            Number of splices: Annotated (sjdb) |	309986832
                       Number of splices: GT/AG |	311751850
                       Number of splices: GC/AG |	2366841
                       Number of splices: AT/AC |	321128
               Number of splices: Non-canonical |	555088
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.80
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10076760
             % of reads mapped to multiple loci |	3.41%
        Number of reads mapped to too many loci |	486855
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	925126
       % of reads unmapped: too many mismatches |	0.31%
            Number of reads unmapped: too short |	2970528
                 % of reads unmapped: too short |	1.01%
                Number of reads unmapped: other |	622340
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3742236
                            % of chimeric reads |	1.27%