File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/e7a21f0efa479f04e20d4bc385ffab/.command.log
Size
7.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-1d9134-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/e7a21f0efa479f04e20d4bc385ffab/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/e7a21f0efa479f04e20d4bc385ffab/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/b64b7e2c6e2f1cfd7e0629e0b5a883/aih-tih-sc-1d9134-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/74f8c10b94c4e2bb0205b19488b8a3/aih-tih-sc-1d9134-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
COL1A1--SLC45A4
starfusion
FSIP1--AC013652.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
ACTBP6--ACTB
starfusion
AC004980.3--UPK3BL1
starfusion
XRCC2--KMT2C
starfusion
TLK2--AC240565.1
starfusion
LHFPL5--CLPSL1
starfusion
STX16--NPEPL1
starfusion
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGC3
arriba
AC092807.3--DDAH1
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
CEP44--LINC02269
arriba
CEP44--LINC02268
arriba
AC015911.9--SLFN12L
arriba

  0%|          | 0/33 [00:00<?, ?it/s]
Processing COL1A1--SLC45A4:   0%|          | 0/33 [00:00<?, ?it/s]
Processing COL1A1--SLC45A4:   3%|▎         | 1/33 [00:00<00:03,  9.23it/s]
Processing FSIP1--AC013652.1:   3%|▎         | 1/33 [00:00<00:03,  9.23it/s]
Processing FSIP1--AC013652.1:   6%|▌         | 2/33 [00:00<00:03,  9.46it/s]
Processing TLK2P1--AC110079.1:   6%|▌         | 2/33 [00:00<00:03,  9.46it/s]
Processing TLK2P1--AC110079.1:   9%|▉         | 3/33 [00:00<00:03,  9.54it/s]
Processing ACTBP6--ACTB:   9%|▉         | 3/33 [00:00<00:03,  9.54it/s]      
Processing ACTBP6--ACTB:  12%|█▏        | 4/33 [00:00<00:03,  9.57it/s]
Processing AC004980.3--UPK3BL1:  12%|█▏        | 4/33 [00:00<00:03,  9.57it/s]
Processing AC004980.3--UPK3BL1:  15%|█▌        | 5/33 [00:00<00:02,  9.60it/s]
Processing XRCC2--KMT2C:  15%|█▌        | 5/33 [00:00<00:02,  9.60it/s]       
Processing XRCC2--KMT2C:  18%|█▊        | 6/33 [00:00<00:02,  9.61it/s]
Processing TLK2--AC240565.1:  18%|█▊        | 6/33 [00:00<00:02,  9.61it/s]
Processing TLK2--AC240565.1:  21%|██        | 7/33 [00:00<00:02,  9.60it/s]
Processing LHFPL5--CLPSL1:  21%|██        | 7/33 [00:00<00:02,  9.60it/s]  
Processing LHFPL5--CLPSL1:  24%|██▍       | 8/33 [00:00<00:02,  9.60it/s]
Processing STX16--NPEPL1:  24%|██▍       | 8/33 [00:00<00:02,  9.60it/s] 
Processing STX16--NPEPL1:  27%|██▋       | 9/33 [00:00<00:02,  9.60it/s]
Processing PCDHA6--PCDHA13:  27%|██▋       | 9/33 [00:00<00:02,  9.60it/s]
Processing PCDHA6--PCDHA13:  30%|███       | 10/33 [00:01<00:02,  9.61it/s]
Processing PCDHA6--PCDHAC1:  30%|███       | 10/33 [00:01<00:02,  9.61it/s]
Processing PCDHA6--PCDHAC1:  33%|███▎      | 11/33 [00:01<00:02,  9.62it/s]
Processing PCDHA6--PCDHAC2:  33%|███▎      | 11/33 [00:01<00:02,  9.62it/s]
Processing PCDHA6--PCDHAC2:  36%|███▋      | 12/33 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGA8:  36%|███▋      | 12/33 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGA8:  39%|███▉      | 13/33 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGB6:  39%|███▉      | 13/33 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGB6:  42%|████▏     | 14/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC4:  42%|████▏     | 14/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC4:  45%|████▌     | 15/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC5:  45%|████▌     | 15/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC5:  48%|████▊     | 16/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  48%|████▊     | 16/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  52%|█████▏    | 17/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA11:  52%|█████▏    | 17/33 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA11:  55%|█████▍    | 18/33 [00:01<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA9:  55%|█████▍    | 18/33 [00:01<00:01,  9.62it/s] 
Processing PCDHGA5--PCDHGA9:  58%|█████▊    | 19/33 [00:01<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA12:  58%|█████▊    | 19/33 [00:01<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGA12:  61%|██████    | 20/33 [00:02<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGB7:  61%|██████    | 20/33 [00:02<00:01,  9.62it/s] 
Processing PCDHGA5--PCDHGB7:  64%|██████▎   | 21/33 [00:02<00:01,  9.61it/s]
Processing PCDHGA5--PCDHGC3:  64%|██████▎   | 21/33 [00:02<00:01,  9.61it/s]
Processing PCDHGA5--PCDHGC3:  67%|██████▋   | 22/33 [00:02<00:01,  9.61it/s]
Processing AC092807.3--DDAH1:  67%|██████▋   | 22/33 [00:02<00:01,  9.61it/s]
Processing AC092807.3--DDAH1:  70%|██████▉   | 23/33 [00:02<00:01,  9.61it/s]
Processing PCDHA11--PCDHA13:  70%|██████▉   | 23/33 [00:02<00:01,  9.61it/s] 
Processing PCDHA11--PCDHA13:  73%|███████▎  | 24/33 [00:02<00:00,  9.62it/s]
Processing PCDHA11--PCDHAC1:  73%|███████▎  | 24/33 [00:02<00:00,  9.62it/s]
Processing PCDHA11--PCDHAC1:  76%|███████▌  | 25/33 [00:02<00:00,  9.61it/s]
Processing PCDHA11--PCDHAC2:  76%|███████▌  | 25/33 [00:02<00:00,  9.61it/s]
Processing PCDHA11--PCDHAC2:  79%|███████▉  | 26/33 [00:02<00:00,  9.60it/s]
Processing TVP23C--CDRT4:  79%|███████▉  | 26/33 [00:02<00:00,  9.60it/s]   
Processing TVP23C--CDRT4:  82%|████████▏ | 27/33 [00:02<00:00,  9.61it/s]
Processing PCDHA4--PCDHAC1:  82%|████████▏ | 27/33 [00:02<00:00,  9.61it/s]
Processing PCDHA4--PCDHAC1:  85%|████████▍ | 28/33 [00:02<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC2:  85%|████████▍ | 28/33 [00:02<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC2:  88%|████████▊ | 29/33 [00:03<00:00,  9.62it/s]
Processing PCDHA4--PCDHA13:  88%|████████▊ | 29/33 [00:03<00:00,  9.62it/s]
Processing PCDHA4--PCDHA13:  91%|█████████ | 30/33 [00:03<00:00,  9.60it/s]
Processing CEP44--LINC02269:  91%|█████████ | 30/33 [00:03<00:00,  9.60it/s]
Processing CEP44--LINC02269:  94%|█████████▍| 31/33 [00:03<00:00,  9.59it/s]
Processing CEP44--LINC02268:  94%|█████████▍| 31/33 [00:03<00:00,  9.59it/s]
Processing CEP44--LINC02268:  97%|█████████▋| 32/33 [00:03<00:00,  9.60it/s]
Processing AC015911.9--SLFN12L:  97%|█████████▋| 32/33 [00:03<00:00,  9.60it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 33/33 [00:03<00:00,  9.61it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 33/33 [00:03<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory