File Info
- Filename
- aih-tih-sc-1d9134-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/e7a21f0efa479f04e20d4bc385ffab/aih-tih-sc-1d9134-R1_B23WHYVLT4_1.fusions.csv
- Size
- 7.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-1d9134-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| COL1A1--SLC45A4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:50189867:-#chr8:141254178:-,junction_reads: 41,spanning_reads: 0,ffmp: 0.1724 | ||
| FSIP1--AC013652.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:39600845#chr15:39071608,reading-frame: .,type: deletion,split_reads1: 29,split_reads2: 4,discordant_mates: 2,coverage1: 2422,coverage2: 8,confidence: high | position: chr15:39600845:-#chr15:39071608:-,junction_reads: 35,spanning_reads: 2,ffmp: 0.1546 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 31,spanning_reads: 0,ffmp: 0.1272 | ||
| ACTBP6--ACTB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:84948968:+#chr7:5528696:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0715 | ||
| AC004980.3--UPK3BL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:76527852:+#chr7:102640773:-,junction_reads: 16,spanning_reads: 0,ffmp: 0.0224 | ||
| XRCC2--KMT2C | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr7:152660701:-#chr7:152358675:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0505 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.009 | ||
| LHFPL5--CLPSL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:35797459:+#chr6:35786998:+,junction_reads: 11,spanning_reads: 3,ffmp: 0.0589 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 38,split_reads2: 39,discordant_mates: 3,coverage1: 1672,coverage2: 357,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0379 | |
| PCDHA6--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 81,discordant_mates: 0,coverage1: 286,coverage2: 974,confidence: high | ||
| PCDHA6--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 81,discordant_mates: 0,coverage1: 286,coverage2: 974,confidence: high | ||
| PCDHA6--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 81,discordant_mates: 0,coverage1: 286,coverage2: 974,confidence: high | ||
| PCDHGA5--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| PCDHGA5--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 292,coverage2: 5751,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 22,split_reads2: 51,discordant_mates: 0,coverage1: 116,coverage2: 823,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 31,discordant_mates: 2,coverage1: 440,coverage2: 974,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 31,discordant_mates: 2,coverage1: 440,coverage2: 974,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 31,discordant_mates: 2,coverage1: 440,coverage2: 974,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 28,split_reads2: 38,discordant_mates: 0,coverage1: 385,coverage2: 275,confidence: high | |
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 13,split_reads2: 38,discordant_mates: 1,coverage1: 287,coverage2: 974,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 13,split_reads2: 38,discordant_mates: 1,coverage1: 287,coverage2: 974,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 13,split_reads2: 38,discordant_mates: 1,coverage1: 287,coverage2: 974,confidence: high | ||
| CEP44--LINC02269 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:174299210#chr4:174069815,reading-frame: out-of-frame,type: duplication,split_reads1: 18,split_reads2: 3,discordant_mates: 2,coverage1: 569,coverage2: 9,confidence: high | ||
| CEP44--LINC02268 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:174299210#chr4:174069815,reading-frame: out-of-frame,type: duplication,split_reads1: 18,split_reads2: 3,discordant_mates: 2,coverage1: 569,coverage2: 9,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 7,split_reads2: 9,discordant_mates: 1,coverage1: 214,coverage2: 100,confidence: high |
34 rows