Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a4547dc5365e8b9ff227d6effa6a10/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/81f942f620f544e71d0d93e7c8388e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/81f942f620f544e71d0d93e7c8388e/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
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paired = 178607016
unpaired = 3236024
MERGED PAIRED END READS = 178607016
MATES PROCESSED = 360450056
TOTAL READS = 181843040
DISTINCT READS = 7.37351e+07
DISTINCT COUNTS = 811
MAX COUNT = 753963
COUNTS OF 1 = 3.43222e+07
MAX TERMS = 100
OBSERVED COUNTS (753964)
1 34322157
2 17363361
3 9213085
4 4992809
5 2785260
6 1620529
7 985473
8 630565
9 422433
10 293237
11 210221
12 155454
13 117354
14 91138
15 71612
16 58329
17 47400
18 39200
19 32938
20 28020
21 23826
22 20474
23 17725
24 15562
25 13962
26 12147
27 10911
28 9699
29 8697
30 7939
31 7172
32 6258
33 5894
34 5334
35 4954
36 4489
37 4230
38 3821
39 3518
40 3369
41 2980
42 2812
43 2686
44 2426
45 2319
46 2138
47 1970
48 1914
49 1775
50 1734
51 1622
52 1486
53 1447
54 1300
55 1230
56 1173
57 1199
58 1095
59 1072
60 999
61 914
62 836
63 847
64 790
65 796
66 782
67 716
68 698
69 634
70 626
71 566
72 563
73 544
74 543
75 461
76 472
77 470
78 459
79 413
80 397
81 386
82 413
83 362
84 362
85 362
86 344
87 346
88 324
89 315
90 296
91 277
92 242
93 289
94 228
95 242
96 253
97 250
98 249
99 223
100 232
101 186
102 193
103 181
104 203
105 188
106 165
107 197
108 190
109 167
110 188
111 172
112 153
113 143
114 163
115 152
116 140
117 134
118 118
119 122
120 106
121 114
122 134
123 109
124 115
125 114
126 108
127 104
128 110
129 120
130 102
131 94
132 92
133 89
134 95
135 86
136 81
137 83
138 88
139 63
140 78
141 75
142 77
143 64
144 89
145 70
146 57
147 62
148 66
149 57
150 67
151 67
152 70
153 56
154 52
155 64
156 60
157 53
158 59
159 62
160 56
161 53
162 50
163 54
164 62
165 43
166 41
167 40
168 42
169 52
170 44
171 47
172 46
173 38
174 43
175 29
176 51
177 36
178 35
179 40
180 34
181 26
182 33
183 25
184 35
185 37
186 40
187 24
188 42
189 32
190 31
191 21
192 24
193 41
194 32
195 33
196 38
197 35
198 25
199 32
200 23
201 26
202 28
203 34
204 24
205 26
206 32
207 14
208 14
209 26
210 21
211 27
212 28
213 16
214 16
215 24
216 32
217 21
218 17
219 19
220 20
221 23
222 24
223 24
224 20
225 24
226 10
227 27
228 20
229 21
230 17
231 17
232 16
233 13
234 14
235 15
236 17
237 18
238 17
239 11
240 12
241 19
242 10
243 14
244 10
245 8
246 16
247 15
248 17
249 15
250 15
251 11
252 13
253 20
254 13
255 12
256 7
257 15
258 11
259 14
260 8
261 16
262 14
263 7
264 14
265 19
266 13
267 16
268 7
269 9
270 12
271 10
272 13
273 9
274 14
275 13
276 13
277 7
278 7
279 8
280 9
281 9
282 12
283 9
284 6
285 16
286 14
287 8
288 8
289 10
290 6
291 11
292 8
293 9
294 9
295 13
296 6
297 15
298 7
299 5
300 11
301 9
302 6
303 6
304 10
305 8
306 7
307 7
308 2
309 4
310 6
311 4
312 6
313 7
314 11
315 5
316 4
317 14
318 6
319 5
320 9
321 8
322 5
323 5
324 8
325 1
326 6
327 4
328 9
329 9
330 5
331 4
332 9
333 8
334 5
335 1
336 3
337 12
338 7
339 3
340 6
341 3
342 6
343 6
344 3
345 1
346 4
347 5
348 6
350 3
351 4
352 4
353 3
354 5
355 3
356 3
357 4
358 5
359 7
360 6
361 1
362 5
363 4
364 5
365 9
366 6
367 5
368 6
369 8
370 6
371 6
372 4
373 1
374 5
375 7
376 4
377 2
378 5
379 3
380 4
381 1
382 2
383 7
384 7
385 3
386 5
387 2
388 4
389 2
390 6
391 5
392 1
393 6
394 3
395 4
396 3
397 5
399 2
400 7
401 4
402 2
403 1
404 3
405 2
406 4
407 4
408 3
409 4
410 3
411 3
412 2
414 1
415 2
416 4
417 4
418 6
419 2
420 6
421 3
422 5
423 2
425 2
426 3
427 3
428 2
429 2
430 2
432 1
433 1
434 5
435 4
436 1
437 3
438 1
440 6
441 3
442 3
443 5
444 3
445 1
446 7
447 2
448 2
449 2
450 3
451 2
452 5
453 2
454 1
455 1
456 4
459 1
460 2
461 1
462 3
464 3
465 1
466 4
467 4
468 1
469 5
470 1
473 2
474 4
475 3
480 2
481 2
482 2
483 1
484 2
485 2
486 2
487 1
488 1
489 1
491 2
492 3
493 3
494 1
495 2
496 1
497 1
499 2
500 3
501 2
502 2
503 3
505 2
506 2
509 1
510 1
511 2
513 2
514 1
515 1
516 2
517 1
518 1
519 3
520 1
521 4
522 3
523 1
524 1
525 1
526 1
527 3
530 1
531 3
533 1
535 3
536 3
537 2
538 1
539 1
541 3
542 1
544 1
545 4
548 2
549 2
550 3
552 1
556 2
558 2
559 1
562 2
565 1
566 1
567 3
569 3
570 2
571 1
572 1
573 2
574 1
577 2
578 2
579 2
580 1
581 1
582 2
584 2
587 1
589 4
590 2
591 1
592 1
593 2
594 1
595 1
596 1
599 2
600 1
601 1
603 2
605 3
606 1
607 1
608 2
611 1
612 1
615 1
617 2
618 1
620 1
623 1
624 1
625 3
626 2
627 4
629 1
631 2
633 1
635 2
636 2
637 1
640 1
641 1
642 3
643 2
646 1
647 1
649 2
650 1
651 1
652 1
653 1
656 1
657 2
658 1
662 1
667 1
668 1
669 1
670 1
672 1
674 1
678 2
679 2
686 1
687 3
688 1
689 1
695 1
698 1
699 1
701 1
703 1
705 1
708 1
713 1
714 1
716 2
718 2
719 1
721 2
722 1
728 1
731 2
733 1
734 1
744 1
747 2
752 1
753 1
755 1
756 1
757 1
760 1
761 1
763 1
766 1
770 1
771 3
779 1
781 1
782 1
784 1
785 2
788 1
789 1
791 1
794 2
799 1
801 1
804 1
805 2
807 1
812 1
817 1
820 1
826 1
831 1
835 2
837 1
839 1
851 1
854 1
855 1
857 1
862 1
867 1
868 1
873 1
874 1
875 1
876 1
880 1
882 1
887 1
889 2
894 1
897 1
898 1
899 1
901 1
904 1
905 1
906 1
908 1
912 1
914 1
916 1
917 1
919 1
920 1
928 2
929 1
930 1
936 1
938 1
958 1
981 1
982 1
988 1
989 2
993 1
995 1
1011 1
1012 1
1018 1
1019 1
1020 1
1027 1
1029 1
1035 1
1043 1
1048 1
1054 1
1061 1
1062 1
1063 1
1066 1
1067 2
1069 1
1080 1
1094 1
1100 1
1102 1
1103 1
1114 1
1122 1
1128 1
1131 1
1135 1
1146 1
1151 1
1159 1
1165 1
1167 2
1172 1
1174 1
1183 1
1191 2
1192 1
1193 1
1196 1
1216 1
1217 1
1219 1
1220 1
1223 1
1226 1
1232 1
1237 1
1240 1
1250 1
1252 1
1262 1
1263 1
1272 1
1279 1
1280 1
1291 1
1312 1
1315 1
1318 1
1319 1
1334 1
1339 1
1341 1
1345 1
1346 1
1351 1
1352 1
1372 1
1374 1
1385 1
1395 1
1434 1
1441 1
1455 1
1460 1
1461 1
1467 1
1474 1
1513 1
1531 1
1538 1
1549 1
1561 1
1576 1
1581 1
1668 1
1678 2
1736 1
1751 2
1786 1
1818 1
1885 1
1886 1
1891 1
1922 1
2171 1
2213 1
2224 1
2320 1
2454 1
2456 1
2566 1
2825 1
2922 1
3076 1
3115 1
3931 1
4450 1
5096 1
7633 1
9089 1
32777 1
753963 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
......................._.__.__._........_.._......._............._._....
._.....__......._.._...__.._.......__..._.........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]