Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/452ec699aed73e960f1ce7f9bd1aab/aih-tih-sc-8a623b-R1_B23WHYVLT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/b2c8e595691cfd955dd46f3f8e6c24/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/b2c8e595691cfd955dd46f3f8e6c24/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/452ec699aed73e960f1ce7f9bd1aab/aih-tih-sc-8a623b-R1_B23WHYVLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/3b10bd4a02263bbc6b8ac4e3144907/aih-tih-sc-8a623b-R1_B23WHYVLT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.xX19LdOm8X/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.xX19LdOm8X/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.xX19LdOm8X/./star-fusion.preliminary
-sample contains 295108100 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.xX19LdOm8X/ctat_genome_lib_build_dir  -J /tmp/nxf.xX19LdOm8X/aih-tih-sc-8a623b-R1_B23WHYVLT4_1.Chimeric.out.junction  -O /tmp/nxf.xX19LdOm8X/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.xX19LdOm8X/aih-tih-sc-8a623b-R1_B23WHYVLT4_1.Chimeric.out.junction