#!/bin/bash -euo pipefail
cat aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L001_R1_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L002_R1_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L003_R1_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L004_R1_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L005_R1_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L006_R1_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L007_R1_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L008_R1_001.fastq.gz > aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_R1.fastq.gz
cat aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L001_R2_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L002_R2_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L003_R2_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L004_R2_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L005_R2_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L006_R2_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L007_R2_001.fastq.gz aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_S89_L008_R2_001.fastq.gz > aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS