Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/77c7031aa4fbecfcc397230e8b4e78/aih-tih-sc-62dadb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/cbf20b17dab7884b93b3ea3dcd6d00/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/cbf20b17dab7884b93b3ea3dcd6d00/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
paired = 88534671
unpaired = 1742045
MERGED PAIRED END READS = 88534671
MATES PROCESSED = 178811387
TOTAL READS = 90276716
DISTINCT READS = 3.62047e+07
DISTINCT COUNTS = 451
MAX COUNT = 387869
COUNTS OF 1 = 1.58662e+07
MAX TERMS = 100
OBSERVED COUNTS (387870)
1 15866191
2 8532344
3 4843098
4 2745060
5 1570776
6 913098
7 549539
8 343796
9 223191
10 150627
11 105195
12 75733
13 55578
14 42201
15 31606
16 24890
17 19335
18 15366
19 12653
20 10267
21 8537
22 6945
23 6053
24 5122
25 4449
26 3972
27 3348
28 2940
29 2569
30 2268
31 2029
32 1855
33 1639
34 1420
35 1338
36 1239
37 1071
38 1029
39 968
40 832
41 812
42 680
43 692
44 637
45 529
46 500
47 482
48 449
49 393
50 410
51 423
52 348
53 321
54 330
55 297
56 258
57 250
58 236
59 253
60 232
61 222
62 216
63 193
64 175
65 165
66 162
67 145
68 147
69 171
70 134
71 119
72 126
73 117
74 124
75 118
76 102
77 97
78 105
79 90
80 91
81 93
82 91
83 99
84 66
85 86
86 63
87 49
88 65
89 71
90 66
91 58
92 55
93 47
94 57
95 66
96 40
97 50
98 40
99 59
100 35
101 46
102 42
103 35
104 39
105 37
106 39
107 37
108 42
109 31
110 20
111 23
112 32
113 39
114 23
115 22
116 23
117 24
118 27
119 24
120 16
121 24
122 20
123 20
124 29
125 15
126 27
127 16
128 14
129 13
130 12
131 11
132 19
133 21
134 24
135 13
136 11
137 18
138 23
139 18
140 14
141 12
142 27
143 10
144 9
145 11
146 16
147 22
148 7
149 13
150 6
151 21
152 10
153 9
154 8
155 6
156 7
157 8
158 10
159 9
160 12
161 6
162 9
163 10
164 10
165 7
166 11
167 3
168 7
169 9
170 8
171 9
172 12
173 4
174 4
175 2
176 6
177 3
178 6
179 6
180 3
181 5
182 6
183 3
184 6
185 4
186 11
187 10
188 4
189 8
190 3
191 4
192 7
193 7
194 5
195 6
196 5
197 5
198 4
199 8
200 7
201 5
202 4
203 3
204 4
205 6
206 5
207 3
208 7
209 7
210 3
211 1
212 1
213 5
214 6
215 3
216 1
217 7
218 5
219 4
220 2
221 1
222 2
223 5
224 5
225 3
226 6
227 2
228 2
229 4
230 1
231 6
232 1
233 1
234 2
236 3
237 4
239 4
240 2
241 1
242 3
243 1
244 2
245 4
246 1
247 1
248 1
249 2
250 4
252 1
253 2
254 6
255 3
256 3
257 4
258 3
259 4
260 3
261 2
262 2
264 1
265 4
266 2
267 4
268 1
269 1
270 3
273 2
274 2
275 1
276 3
277 2
278 2
280 1
281 2
282 1
283 4
284 1
286 1
287 1
288 2
289 2
290 1
291 1
293 1
294 1
296 1
297 1
298 2
299 2
301 1
303 1
304 3
305 1
306 1
309 2
310 1
311 3
312 1
313 1
317 1
318 1
319 4
321 3
323 1
324 1
326 2
328 1
330 4
333 1
337 1
339 1
344 1
347 2
348 1
349 1
350 2
351 1
352 2
355 1
358 1
359 2
361 1
362 2
363 1
368 1
369 2
371 3
374 2
377 1
378 1
379 3
381 1
384 2
385 1
386 1
387 1
388 1
392 2
395 2
400 1
402 1
405 1
414 1
415 1
418 2
420 1
422 3
425 2
426 1
427 1
432 1
434 1
437 1
444 1
447 1
457 1
465 1
466 1
469 1
472 2
476 1
481 1
482 1
483 1
485 1
495 1
496 1
499 1
504 1
506 2
509 1
510 2
512 1
516 1
519 2
526 1
528 1
534 1
535 1
541 1
542 1
549 1
555 1
562 1
563 1
568 1
574 1
576 1
580 1
587 1
590 1
596 1
597 3
601 1
606 1
608 2
610 1
611 2
621 1
623 1
626 1
628 1
630 1
636 1
638 1
643 2
647 1
648 1
649 1
655 1
659 3
669 1
677 2
678 1
684 1
690 1
694 1
695 1
710 1
715 1
733 1
746 1
750 1
767 1
803 1
804 1
820 1
865 1
881 1
887 1
899 1
913 1
915 1
958 1
1003 1
1039 1
1059 1
1067 1
1151 1
1348 1
1417 1
1479 1
1594 1
1619 1
1662 1
2101 1
4531 1
4716 1
5099 1
17089 1
387869 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._..........._.._........................._.............._.._.......
..............._...._....._........._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]