Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/77c7031aa4fbecfcc397230e8b4e78/aih-tih-sc-62dadb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/cbf20b17dab7884b93b3ea3dcd6d00/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/cbf20b17dab7884b93b3ea3dcd6d00/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records paired = 88534671 unpaired = 1742045 MERGED PAIRED END READS = 88534671 MATES PROCESSED = 178811387 TOTAL READS = 90276716 DISTINCT READS = 3.62047e+07 DISTINCT COUNTS = 451 MAX COUNT = 387869 COUNTS OF 1 = 1.58662e+07 MAX TERMS = 100 OBSERVED COUNTS (387870) 1 15866191 2 8532344 3 4843098 4 2745060 5 1570776 6 913098 7 549539 8 343796 9 223191 10 150627 11 105195 12 75733 13 55578 14 42201 15 31606 16 24890 17 19335 18 15366 19 12653 20 10267 21 8537 22 6945 23 6053 24 5122 25 4449 26 3972 27 3348 28 2940 29 2569 30 2268 31 2029 32 1855 33 1639 34 1420 35 1338 36 1239 37 1071 38 1029 39 968 40 832 41 812 42 680 43 692 44 637 45 529 46 500 47 482 48 449 49 393 50 410 51 423 52 348 53 321 54 330 55 297 56 258 57 250 58 236 59 253 60 232 61 222 62 216 63 193 64 175 65 165 66 162 67 145 68 147 69 171 70 134 71 119 72 126 73 117 74 124 75 118 76 102 77 97 78 105 79 90 80 91 81 93 82 91 83 99 84 66 85 86 86 63 87 49 88 65 89 71 90 66 91 58 92 55 93 47 94 57 95 66 96 40 97 50 98 40 99 59 100 35 101 46 102 42 103 35 104 39 105 37 106 39 107 37 108 42 109 31 110 20 111 23 112 32 113 39 114 23 115 22 116 23 117 24 118 27 119 24 120 16 121 24 122 20 123 20 124 29 125 15 126 27 127 16 128 14 129 13 130 12 131 11 132 19 133 21 134 24 135 13 136 11 137 18 138 23 139 18 140 14 141 12 142 27 143 10 144 9 145 11 146 16 147 22 148 7 149 13 150 6 151 21 152 10 153 9 154 8 155 6 156 7 157 8 158 10 159 9 160 12 161 6 162 9 163 10 164 10 165 7 166 11 167 3 168 7 169 9 170 8 171 9 172 12 173 4 174 4 175 2 176 6 177 3 178 6 179 6 180 3 181 5 182 6 183 3 184 6 185 4 186 11 187 10 188 4 189 8 190 3 191 4 192 7 193 7 194 5 195 6 196 5 197 5 198 4 199 8 200 7 201 5 202 4 203 3 204 4 205 6 206 5 207 3 208 7 209 7 210 3 211 1 212 1 213 5 214 6 215 3 216 1 217 7 218 5 219 4 220 2 221 1 222 2 223 5 224 5 225 3 226 6 227 2 228 2 229 4 230 1 231 6 232 1 233 1 234 2 236 3 237 4 239 4 240 2 241 1 242 3 243 1 244 2 245 4 246 1 247 1 248 1 249 2 250 4 252 1 253 2 254 6 255 3 256 3 257 4 258 3 259 4 260 3 261 2 262 2 264 1 265 4 266 2 267 4 268 1 269 1 270 3 273 2 274 2 275 1 276 3 277 2 278 2 280 1 281 2 282 1 283 4 284 1 286 1 287 1 288 2 289 2 290 1 291 1 293 1 294 1 296 1 297 1 298 2 299 2 301 1 303 1 304 3 305 1 306 1 309 2 310 1 311 3 312 1 313 1 317 1 318 1 319 4 321 3 323 1 324 1 326 2 328 1 330 4 333 1 337 1 339 1 344 1 347 2 348 1 349 1 350 2 351 1 352 2 355 1 358 1 359 2 361 1 362 2 363 1 368 1 369 2 371 3 374 2 377 1 378 1 379 3 381 1 384 2 385 1 386 1 387 1 388 1 392 2 395 2 400 1 402 1 405 1 414 1 415 1 418 2 420 1 422 3 425 2 426 1 427 1 432 1 434 1 437 1 444 1 447 1 457 1 465 1 466 1 469 1 472 2 476 1 481 1 482 1 483 1 485 1 495 1 496 1 499 1 504 1 506 2 509 1 510 2 512 1 516 1 519 2 526 1 528 1 534 1 535 1 541 1 542 1 549 1 555 1 562 1 563 1 568 1 574 1 576 1 580 1 587 1 590 1 596 1 597 3 601 1 606 1 608 2 610 1 611 2 621 1 623 1 626 1 628 1 630 1 636 1 638 1 643 2 647 1 648 1 649 1 655 1 659 3 669 1 677 2 678 1 684 1 690 1 694 1 695 1 710 1 715 1 733 1 746 1 750 1 767 1 803 1 804 1 820 1 865 1 881 1 887 1 899 1 913 1 915 1 958 1 1003 1 1039 1 1059 1 1067 1 1151 1 1348 1 1417 1 1479 1 1594 1 1619 1 1662 1 2101 1 4531 1 4716 1 5099 1 17089 1 387869 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ....._..........._.._........................._.............._.._....... ..............._...._....._........._. [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]