File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/73edfcbd9002f5050392b1b1deef1b/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-099ac4-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/c59cf5e82db2eb93d6775dee3e1856/aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/73edfcbd9002f5050392b1b1deef1b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/b0361db838e2a9a600982481a9223b/aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/73edfcbd9002f5050392b1b1deef1b/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 315748342
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	315748342
Known Splicing Events:	312078122
Partial Novel Splicing Events:	2100349
Novel Splicing Events:	1435238
Filtered Splicing Events:	134633

Total splicing  Junctions:	569217
Known Splicing Junctions:	291405
Partial Novel Splicing Junctions:	173156
Novel Splicing Junctions:	104656

===================================================================
Create BED file ...
Create Interact file ...