File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/1b2ff0c69bb0d568a9340ece81324f/.command.log
Size
1.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-89cc59-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/ae40cff428b4d5ff5f95735b0fc0ef/aih-tih-sc-89cc59-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/e225ae7e0664b948ac9bd3fb3014f1/aih-tih-sc-89cc59-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/1b2ff0c69bb0d568a9340ece81324f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/1b2ff0c69bb0d568a9340ece81324f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/2 [00:00<?, ?it/s]TET3--TET3
arriba
AC073046.1--AC073046.1
arriba

Processing TET3--TET3:   0%|          | 0/2 [00:00<?, ?it/s]
Processing TET3--TET3:  50%|█████     | 1/2 [00:00<00:00,  9.02it/s]
Processing AC073046.1--AC073046.1:  50%|█████     | 1/2 [00:00<00:00,  9.02it/s]
Processing AC073046.1--AC073046.1: 100%|██████████| 2/2 [00:00<00:00,  9.29it/s]
Processing AC073046.1--AC073046.1: 100%|██████████| 2/2 [00:00<00:00,  9.24it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory