Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3edd93d4449b96191f56ca1f5e5e33/aih-tih-sc-c55577-R1_B23WHYVLT4_1_2.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/579c5896274e573ffca19af41adfdf/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/579c5896274e573ffca19af41adfdf/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3edd93d4449b96191f56ca1f5e5e33/aih-tih-sc-c55577-R1_B23WHYVLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/92ea70de7325eaa5e4e48d7b553477/aih-tih-sc-c55577-R1_B23WHYVLT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.WfNGDdQq8M/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary
-sample contains 194170457 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir -J /tmp/nxf.WfNGDdQq8M/aih-tih-sc-c55577-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.WfNGDdQq8M/aih-tih-sc-c55577-R1_B23WHYVLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
[10000], rate=31578.95/min
[20000], rate=35294.12/min
[30000], rate=36734.69/min
[40000], rate=39344.26/min
[50000], rate=40000.00/min
[60000], rate=40449.44/min
[70000], rate=42000.00/min
[80000], rate=42105.26/min
[90000], rate=42187.50/min
[100000], rate=43165.47/min
[110000], rate=44000.00/min
[120000], rate=44720.50/min
[130000], rate=45614.04/min
[140000], rate=46408.84/min
[150000], rate=46875.00/min
[160000], rate=47761.19/min
[170000], rate=48341.23/min
[180000], rate=48868.78/min
[190000], rate=49565.22/min
[200000], rate=50209.21/min
[210000], rate=51219.51/min
[220000], rate=52173.91/min
[230000], rate=53076.92/min
[240000], rate=54135.34/min
[250000], rate=55147.06/min
[260000], rate=56115.11/min
[270000], rate=57243.82/min
[280000], rate=58333.33/min
[290000], rate=59183.67/min
[300000], rate=60000.00/min
[310000], rate=60000.00/min
[320000], rate=60377.36/min
[330000], rate=60736.20/min
[340000], rate=61077.84/min
[350000], rate=61403.51/min
[360000], rate=61714.29/min
[370000], rate=62184.87/min
[380000], rate=62637.36/min
[390000], rate=63243.24/min
[400000], rate=63829.79/min
[410000], rate=64229.77/min
[420000], rate=64781.49/min
[430000], rate=65151.52/min
[440000], rate=65671.64/min
[450000], rate=66339.07/min
[460000], rate=66666.67/min
[470000], rate=67142.86/min
[480000], rate=67447.31/min
[490000], rate=67898.38/min
[500000], rate=68649.89/min
[510000], rate=69230.77/min
[520000], rate=69642.86/min
[530000], rate=70982.14/min
[540000], rate=72160.36/min
[550000], rate=73496.66/min
[560000], rate=74666.67/min
[570000], rate=76000.00/min
[580000], rate=77161.86/min
[590000], rate=78318.58/min
[600000], rate=79646.02/min
[610000], rate=80794.70/min
[620000], rate=82119.21/min
[630000], rate=83443.71/min
[640000], rate=84581.50/min
[650000], rate=85526.32/min
[660000], rate=86274.51/min
[670000], rate=86637.93/min
[680000], rate=87553.65/min
[690000], rate=88272.92/min
[700000], rate=88607.59/min
[710000], rate=89684.21/min
[720000], rate=90947.37/min
[730000], rate=92016.81/min
[740000], rate=93277.31/min
[750000], rate=94537.82/min
[760000], rate=95597.48/min
[770000], rate=96855.35/min
[780000], rate=97500.00/min
[790000], rate=97731.96/min
[800000], rate=98159.51/min
[810000], rate=98580.12/min
[820000], rate=98993.96/min
[830000], rate=99401.20/min
[840000], rate=99604.74/min
[850000], rate=99804.31/min
[860000], rate=99613.90/min
[870000], rate=100000.00/min
[880000], rate=100000.00/min
[890000], rate=99256.51/min
[900000], rate=98720.29/min
[910000], rate=99453.55/min
[920000], rate=100546.45/min
[930000], rate=101454.55/min
[940000], rate=102359.35/min
[950000], rate=103260.87/min
[960000], rate=104347.83/min
[970000], rate=105244.12/min
[980000], rate=106329.11/min
[990000], rate=107220.22/min
[1000000], rate=108303.25/min
[1010000], rate=109189.19/min
[1020000], rate=110270.27/min
[1030000], rate=111151.08/min
[1040000], rate=112230.22/min
[1050000], rate=113105.92/min
[1060000], rate=114183.12/min
[1070000], rate=114234.88/min
[1080000], rate=114285.71/min
[1090000], rate=114335.66/min
[1100000], rate=114982.58/min
[1110000], rate=114629.95/min
[1120000], rate=115662.65/min
[1130000], rate=116494.85/min
[1140000], rate=117525.77/min
[1150000], rate=118353.34/min
[1160000], rate=119382.50/min
[1170000], rate=120411.66/min
[1180000], rate=121232.88/min
[1190000], rate=121635.43/min
[1200000], rate=121212.12/min
[1210000], rate=121202.00/min
[1220000], rate=121192.05/min
[1230000], rate=121983.47/min
[1240000], rate=122975.21/min
[1250000], rate=123762.38/min
[1260000], rate=124752.48/min
[1270000], rate=125535.42/min
[1280000], rate=126315.79/min
[1290000], rate=127093.60/min
[1300000], rate=128078.82/min
[1310000], rate=129064.04/min
[1320000], rate=129836.07/min
[1330000], rate=130819.67/min
[1340000], rate=131372.55/min
[1350000], rate=131707.32/min
[1360000], rate=131400.97/min
[1370000], rate=131942.22/min
[1380000], rate=132057.42/min
[1390000], rate=132171.16/min
[1400000], rate=133122.03/min
[1410000], rate=134072.90/min
[1420000], rate=134810.13/min
[1430000], rate=135759.49/min
[1440000], rate=136708.86/min
[1450000], rate=137440.76/min
[1460000], rate=138388.63/min
[1470000], rate=138461.54/min
[1480000], rate=138533.54/min
[1490000], rate=138390.09/min
[1500000], rate=138461.54/min
[1510000], rate=138532.11/min
[1520000], rate=138601.82/min
[1530000], rate=138880.48/min
[1540000], rate=138530.73/min
[1550000], rate=139221.56/min
[1560000], rate=139493.29/min
[1570000], rate=139349.11/min
[1580000], rate=139207.05/min
[1590000], rate=139067.06/min
[1600000], rate=138929.09/min
[1610000], rate=138000.00/min
[1620000], rate=137094.50/min
[1630000], rate=137552.74/min
[1640000], rate=138396.62/min
[1650000], rate=139044.94/min
[1660000], rate=139887.64/min
[1670000], rate=140532.96/min
[1680000], rate=141176.47/min
[1690000], rate=142016.81/min
[1700000], rate=142657.34/min
[1710000], rate=143496.50/min
[1720000], rate=144134.08/min
[1730000], rate=144972.07/min
[1740000], rate=145810.06/min
[1750000], rate=146443.51/min
[1760000], rate=147280.33/min
[1770000], rate=147910.86/min
[1780000], rate=148539.64/min
[1790000], rate=148547.72/min
[1800000], rate=148351.65/min
[1810000], rate=147956.40/min
[1820000], rate=147169.81/min
[1830000], rate=147382.55/min
[1840000], rate=147989.28/min
[1850000], rate=148793.57/min
[1860000], rate=149597.86/min
[1870000], rate=149799.73/min
[1880000], rate=149800.80/min
[1890000], rate=149801.85/min
[1900000], rate=149802.89/min
[1910000], rate=149803.92/min
[1920000], rate=149610.39/min
[1930000], rate=149612.40/min
[1940000], rate=149422.34/min
[1950000], rate=149234.69/min
[1960000], rate=149049.43/min
[1970000], rate=148492.46/min
[1980000], rate=147945.21/min
[1990000], rate=147407.41/min
[2000000], rate=146878.82/min
[2010000], rate=146537.06/min
[2020000], rate=145848.38/min
[2030000], rate=144827.59/min
[2040000], rate=144169.61/min
[2050000], rate=143189.76/min
[2060000], rate=142560.55/min
[2070000], rate=141942.86/min
[2080000], rate=141657.21/min
[2090000], rate=141375.42/min
[2100000], rate=140939.60/min
[2110000], rate=140510.54/min
[2120000], rate=140088.11/min
[2130000], rate=139672.13/min
[2140000], rate=139262.47/min
[2150000], rate=138858.99/min
[2160000], rate=138609.63/min
[2170000], rate=138216.56/min
[2180000], rate=137684.21/min
[2190000], rate=136732.57/min
[2200000], rate=134831.46/min
[2210000], rate=132732.73/min
[2220000], rate=131360.95/min
[2230000], rate=129651.16/min
[2240000], rate=128489.48/min
[2250000], rate=126999.06/min
[2260000], rate=125323.48/min
[2270000], rate=123705.72/min
[2280000], rate=122033.90/min
[2290000], rate=120632.13/min
[2300000], rate=119273.98/min
[2310000], rate=118158.57/min
[2320000], rate=117270.43/min
[2330000], rate=116500.00/min
[2340000], rate=115746.08/min
[2350000], rate=114634.15/min
[2360000], rate=113734.94/min
[2370000], rate=113126.49/min
[2380000], rate=112618.30/min
[2390000], rate=112294.44/min
[2400000], rate=111975.12/min
[2410000], rate=111832.95/min
[2420000], rate=111435.15/min
[2430000], rate=111467.89/min
[2440000], rate=111415.53/min
[2450000], rate=111363.64/min
[2460000], rate=111396.23/min
[2470000], rate=111428.57/min
[2480000], rate=111377.25/min
[2490000], rate=111326.38/min
[2500000], rate=111193.48/min
[2510000], rate=111226.00/min
[2520000], rate=111176.47/min
[2530000], rate=111046.09/min
[2540000], rate=110917.03/min
[2550000], rate=110071.94/min
[2560000], rate=109168.44/min
[2570000], rate=108134.64/min
[2580000], rate=107276.51/min
[2590000], rate=106657.52/min
[2600000], rate=105834.46/min
[2610000], rate=105241.94/min
[2620000], rate=104730.18/min
[2630000], rate=104227.21/min
[2640000], rate=103800.79/min
[2650000], rate=103448.28/min
[2660000], rate=103167.42/min
[2670000], rate=102890.17/min
[2680000], rate=102747.60/min
[2690000], rate=102671.76/min
[2700000], rate=102531.65/min
[2710000], rate=102328.51/min
[2720000], rate=101366.46/min
[2730000], rate=100429.18/min
[2740000], rate=99515.74/min
[2750000], rate=98214.29/min
[2760000], rate=97699.12/min
[2770000], rate=97192.98/min -building interval tree based on /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
[10000], rate=60000.00/min
[20000], rate=63157.89/min
[30000], rate=66666.67/min
[40000], rate=68571.43/min
[50000], rate=69767.44/min
[60000], rate=72000.00/min
[70000], rate=73684.21/min
[80000], rate=75000.00/min
[90000], rate=76056.34/min
[100000], rate=76923.08/min
[110000], rate=78571.43/min
[120000], rate=80000.00/min
[130000], rate=82105.26/min
[140000], rate=83168.32/min
[150000], rate=84112.15/min
[160000], rate=84955.75/min
[170000], rate=85714.29/min
[180000], rate=83720.93/min
[190000], rate=81428.57/min
[200000], rate=78947.37/min
[210000], rate=76829.27/min
[220000], rate=75428.57/min
[230000], rate=75000.00/min
[240000], rate=75000.00/min
[250000], rate=74626.87/min
[260000], rate=73933.65/min
[270000], rate=73303.17/min
[280000], rate=73043.48/min
[290000], rate=72803.35/min
[300000], rate=72580.65/min
[310000], rate=72656.25/min
[320000], rate=71375.46/min
[330000], rate=70462.63/min
[340000], rate=69863.01/min
[350000], rate=69078.95/min
[360000], rate=68571.43/min
[370000], rate=68307.69/min
[380000], rate=68059.70/min
[390000], rate=68023.26/min
[400000], rate=67988.67/min
[410000], rate=68144.04/min
[420000], rate=68292.68/min
[430000], rate=68435.01/min
[440000], rate=69109.95/min
[450000], rate=69587.63/min
[460000], rate=70050.76/min
[470000], rate=70324.19/min
[480000], rate=70761.67/min
[490000], rate=71186.44/min
[500000], rate=71770.33/min
[510000], rate=71495.33/min
[520000], rate=70588.24/min
[530000], rate=69736.84/min
[540000], rate=69230.77/min
[550000], rate=68464.73/min
[560000], rate=67605.63/min
[570000], rate=66927.59/min
[580000], rate=66412.21/min
[590000], rate=66044.78/min
[600000], rate=66055.05/min
[610000], rate=65591.40/min
[620000], rate=65148.86/min
[630000], rate=65060.24/min
[640000], rate=64755.48/min
[650000], rate=64891.85/min
[660000], rate=64918.03/min
[670000], rate=64838.71/min
[680000], rate=64761.90/min
[690000], rate=64890.28/min
[700000], rate=64714.95/min
[710000], rate=64840.18/min
[720000], rate=64864.86/min
[730000], rate=64888.89/min
[740000], rate=64817.52/min
[750000], rate=64748.20/min
[760000], rate=64680.85/min
[770000], rate=64887.64/min
[780000], rate=65271.97/min
[790000], rate=65560.17/min
[800000], rate=66024.76/min
[810000], rate=66302.86/min
[820000], rate=66757.12/min
[830000], rate=67115.90/min
[840000], rate=67469.88/min
[850000], rate=67639.26/min
[860000], rate=67894.74/min
[870000], rate=68235.29/min
[880000], rate=68571.43/min
[890000], rate=68903.23/min
[900000], rate=69230.77/min
[910000], rate=69465.65/min
[920000], rate=69785.08/min
[930000], rate=70100.50/min
[940000], rate=70324.19/min
[950000], rate=70544.55/min
[960000], rate=70935.96/min
[970000], rate=71323.53/min
[980000], rate=71794.87/min
[990000], rate=71912.83/min
[1000000], rate=71942.45/min
[1010000], rate=72315.04/min
[1020000], rate=72511.85/min
[1030000], rate=72791.52/min
[1040000], rate=72982.46/min
[1050000], rate=73255.81/min
[1060000], rate=73526.01/min
[1070000], rate=73878.02/min
[1080000], rate=74057.14/min
[1090000], rate=74149.66/min
[1100000], rate=74324.32/min
[1110000], rate=74496.64/min
[1120000], rate=74749.72/min
[1130000], rate=74834.44/min
[1140000], rate=74917.85/min
[1150000], rate=75000.00/min
[1160000], rate=75324.68/min
[1170000], rate=75483.87/min
[1180000], rate=75641.03/min
[1190000], rate=75796.18/min
[1200000], rate=75949.37/min
[1210000], rate=76340.69/min
[1220000], rate=76649.21/min
[1230000], rate=77035.49/min
[1240000], rate=77178.42/min
[1250000], rate=77399.38/min
[1260000], rate=77538.46/min
[1270000], rate=77675.84/min
[1280000], rate=77732.79/min
[1290000], rate=77788.94/min
[1300000], rate=78000.00/min
[1310000], rate=78053.62/min
[1320000], rate=78106.51/min
[1330000], rate=78005.87/min
[1340000], rate=78058.25/min
[1350000], rate=78412.39/min
[1360000], rate=78688.52/min
[1370000], rate=78886.76/min
[1380000], rate=78932.32/min
[1390000], rate=79052.13/min
[1400000], rate=79320.11/min
[1410000], rate=79362.10/min
[1420000], rate=79477.61/min
[1430000], rate=79591.84/min
[1440000], rate=79704.80/min
[1450000], rate=79816.51/min
[1460000], rate=79854.15/min
[1470000], rate=80036.30/min
[1480000], rate=80072.14/min
[1490000], rate=80107.53/min
[1500000], rate=80213.90/min
[1510000], rate=80390.42/min
[1520000], rate=80494.26/min
[1530000], rate=80455.74/min
[1540000], rate=80487.80/min
[1550000], rate=80589.25/min
[1560000], rate=80689.66/min
[1570000], rate=80858.37/min
[1580000], rate=80887.37/min
[1590000], rate=80916.03/min
[1600000], rate=81081.08/min
[1610000], rate=81244.74/min
[1620000], rate=81475.27/min
[1630000], rate=81229.24/min
[1640000], rate=80788.18/min
[1650000], rate=80948.49/min
[1660000], rate=81041.50/min
[1670000], rate=81067.96/min
[1680000], rate=81028.94/min
[1690000], rate=81055.16/min
[1700000], rate=81210.19/min
[1710000], rate=81235.15/min
[1720000], rate=81323.88/min
[1730000], rate=81475.67/min
[1740000], rate=81498.83/min
[1750000], rate=81521.74/min
[1760000], rate=80981.60/min
[1770000], rate=80883.47/min
[1780000], rate=80725.62/min
[1790000], rate=80570.14/min
[1800000], rate=80597.01/min
[1810000], rate=80563.80/min
[1820000], rate=80590.41/min
[1830000], rate=80616.74/min
[1840000], rate=80760.79/min
[1850000], rate=81021.90/min
[1860000], rate=81045.75/min
[1870000], rate=81069.36/min
[1880000], rate=81092.74/min
[1890000], rate=81232.09/min
[1900000], rate=81081.08/min
[1910000], rate=80875.09/min
[1920000], rate=80559.44/min
[1930000], rate=80082.99/min
[1940000], rate=79726.03/min
[1950000], rate=79322.03/min
[1960000], rate=79032.26/min
[1970000], rate=78747.50/min
[1980000], rate=78467.64/min
[1990000], rate=78295.08/min
[2000000], rate=78023.41/min
[2010000], rate=77806.45/min
[2020000], rate=77742.14/min
[2030000], rate=77728.14/min
[2040000], rate=77664.97/min
[2050000], rate=77700.57/min
[2060000], rate=77784.77/min
[2070000], rate=77819.55/min
[2080000], rate=77902.62/min
[2090000], rate=78033.60/min
[2100000], rate=78115.31/min
[2110000], rate=78196.42/min
[2120000], rate=78276.92/min
[2130000], rate=78404.91/min
[2140000], rate=78532.11/min
[2150000], rate=78562.73/min
[2160000], rate=78688.52/min
[2170000], rate=78765.88/min
[2180000], rate=78890.23/min
[2190000], rate=78918.92/min
[2200000], rate=78947.37/min
[2210000], rate=79116.95/min
[2220000], rate=79191.44/min
[2230000], rate=79218.47/min
[2240000], rate=79198.59/min
[2250000], rate=79225.35/min
[2260000], rate=79205.61/min
[2270000], rate=79232.11/min
[2280000], rate=79075.14/min
[2290000], rate=78874.86/min
[2300000], rate=78542.97/min
[2310000], rate=78305.08/min
[2320000], rate=78026.91/min
[2330000], rate=77323.01/min
[2340000], rate=76595.74/min
[2350000], rate=76381.37/min
[2360000], rate=76210.98/min
[2370000], rate=76164.97/min
[2380000], rate=76078.85/min
[2390000], rate=76033.93/min
[2400000], rate=75949.37/min
[2410000], rate=75905.51/min
[2420000], rate=75901.73/min
[2430000], rate=75858.48/min
[2440000], rate=75894.25/min
[2450000], rate=75851.39/min
[2460000], rate=75965.00/min
[2470000], rate=76078.03/min
[2480000], rate=75995.91/min
[2490000], rate=76069.25/min
[2500000], rate=76142.13/min
[2510000], rate=76176.02/min
[2520000], rate=76209.68/min
[2530000], rate=76243.09/min
[2540000], rate=76314.47/min
[2550000], rate=76195.22/min
[2560000], rate=76001.98/min
[2570000], rate=75885.83/min
[2580000], rate=75808.03/min
[2590000], rate=75767.92/min
[2600000], rate=75618.03/min
[2610000], rate=75288.46/min
[2620000], rate=75215.31/min
[2630000], rate=75142.86/min
[2640000], rate=75071.09/min
[2650000], rate=75070.82/min
[2660000], rate=75070.56/min
[2670000], rate=75070.29/min
[2680000], rate=75105.09/min
[2690000], rate=75209.69/min
[2700000], rate=75313.81/min
[2710000], rate=75347.54/min
[2720000], rate=75415.90/min
[2730000], rate=75449.10/min
[2740000], rate=75516.77/min -building interval tree based on /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
[10000], rate=150000.00/min
[20000], rate=171428.57/min
[30000], rate=150000.00/min
[40000], rate=92307.69/min
[50000], rate=78947.37/min
[60000], rate=87804.88/min
[70000], rate=102439.02/min
[80000], rate=117073.17/min
[90000], rate=128571.43/min
[100000], rate=139534.88/min
[110000], rate=153488.37/min
[120000], rate=167441.86/min
[130000], rate=177272.73/min
[140000], rate=190909.09/min
[150000], rate=204545.45/min
[160000], rate=218181.82/min
[170000], rate=231818.18/min
[180000], rate=245454.55/min
[190000], rate=253333.33/min
[200000], rate=266666.67/min
[210000], rate=280000.00/min
[220000], rate=258823.53/min
[230000], rate=237931.03/min
[240000], rate=228571.43/min
[250000], rate=217391.30/min
[260000], rate=210810.81/min
[270000], rate=218918.92/min
[280000], rate=227027.03/min
[290000], rate=235135.14/min
[300000], rate=240000.00/min
[310000], rate=238461.54/min
[320000], rate=237037.04/min
[330000], rate=232941.18/min
[340000], rate=231818.18/min
[350000], rate=233333.33/min
[360000], rate=232258.06/min
[370000], rate=228865.98/min
[380000], rate=235051.55/min
[390000], rate=234000.00/min
[400000], rate=230769.23/min
[410000], rate=227777.78/min
[420000], rate=227027.03/min
[430000], rate=222413.79/min
[440000], rate=211200.00/min
[450000], rate=204545.45/min
[460000], rate=209090.91/min
[470000], rate=213636.36/min
[480000], rate=218181.82/min
[490000], rate=221052.63/min
[500000], rate=225563.91/min
[510000], rate=228358.21/min
[520000], rate=232835.82/min
[530000], rate=237313.43/min
[540000], rate=241791.04/min
[550000], rate=246268.66/min
[560000], rate=250746.27/min
[570000], rate=253333.33/min
[580000], rate=257777.78/min
[590000], rate=262222.22/min
[600000], rate=266666.67/min
[610000], rate=267153.28/min
[620000], rate=265714.29/min
[630000], rate=260689.66/min
[640000], rate=254304.64/min
[650000], rate=246835.44/min
[660000], rate=247500.00/min
[670000], rate=251250.00/min
[680000], rate=255000.00/min
[690000], rate=258750.00/min
[700000], rate=257668.71/min
[710000], rate=256626.51/min
[720000], rate=255621.30/min
[730000], rate=254651.16/min
[740000], rate=253714.29/min
[750000], rate=252808.99/min
[760000], rate=251933.70/min
[770000], rate=251086.96/min
[780000], rate=252972.97/min
[790000], rate=249473.68/min
[800000], rate=247422.68/min
[810000], rate=246700.51/min
[820000], rate=241176.47/min
[830000], rate=233802.82/min
[840000], rate=231192.66/min
[850000], rate=233944.95/min
[860000], rate=236697.25/min
[870000], rate=238356.16/min
[880000], rate=241095.89/min
[890000], rate=243835.62/min
[900000], rate=245454.55/min
[910000], rate=248181.82/min
[920000], rate=250909.09/min
[930000], rate=253636.36/min
[940000], rate=255203.62/min
[950000], rate=257918.55/min
[960000], rate=260633.48/min
[970000], rate=263348.42/min
[980000], rate=266063.35/min
[990000], rate=267567.57/min
[1000000], rate=267857.14/min
[1010000], rate=266960.35/min
[1020000], rate=263793.10/min
[1030000], rate=261864.41/min
[1040000], rate=258921.16/min
[1050000], rate=254032.26/min
[1060000], rate=256451.61/min
[1070000], rate=257831.33/min
[1080000], rate=256126.48/min
[1090000], rate=256470.59/min
[1100000], rate=255813.95/min
[1110000], rate=255172.41/min
[1120000], rate=255513.31/min
[1130000], rate=252985.07/min
[1140000], rate=252398.52/min
[1150000], rate=251824.82/min
[1160000], rate=249462.37/min
[1170000], rate=248056.54/min
[1180000], rate=247552.45/min
[1190000], rate=242857.14/min
[1200000], rate=238410.60/min
[1210000], rate=236482.08/min
[1220000], rate=238436.48/min
[1230000], rate=240390.88/min
[1240000], rate=242345.28/min
[1250000], rate=243506.49/min
[1260000], rate=245454.55/min
[1270000], rate=246601.94/min
[1280000], rate=248543.69/min
[1290000], rate=250485.44/min
[1300000], rate=252427.18/min
[1310000], rate=254368.93/min
[1320000], rate=256310.68/min
[1330000], rate=258252.43/min
[1340000], rate=259354.84/min
[1350000], rate=261290.32/min
[1360000], rate=263225.81/min
[1370000], rate=261783.44/min
[1380000], rate=261198.74/min
[1390000], rate=258204.33/min
[1400000], rate=257668.71/min
[1410000], rate=254819.28/min
[1420000], rate=253571.43/min
[1430000], rate=254599.41/min
[1440000], rate=254867.26/min
[1450000], rate=253644.31/min
[1460000], rate=253913.04/min
[1470000], rate=253448.28/min
[1480000], rate=253714.29/min
[1490000], rate=252542.37/min
[1500000], rate=251396.65/min
[1510000], rate=239682.54/min
[1520000], rate=225742.57/min
[1530000], rate=212993.04/min
[1540000], rate=204878.05/min
[1550000], rate=196617.34/min
[1560000], rate=189090.91/min
[1570000], rate=182205.03/min
[1580000], rate=175881.26/min
[1590000], rate=169148.94/min
[1600000], rate=162436.55/min
[1610000], rate=156058.16/min
[1620000], rate=150697.67/min
[1630000], rate=144460.86/min
[1640000], rate=139574.47/min
[1650000], rate=134693.88/min
[1660000], rate=129856.58/min
[1670000], rate=126196.47/min
[1680000], rate=122478.74/min
[1690000], rate=118874.56/min
[1700000], rate=115254.24/min
[1710000], rate=112623.49/min
[1720000], rate=110256.41/min
[1730000], rate=108463.95/min
[1740000], rate=106967.21/min
[1750000], rate=105740.18/min
[1760000], rate=104554.46/min
[1770000], rate=103006.79/min
[1780000], rate=101908.40/min
[1790000], rate=100656.04/min
[1800000], rate=99631.00/min
[1810000], rate=98458.75/min
[1820000], rate=97849.46/min
[1830000], rate=96825.40/min
[1840000], rate=95833.33/min
[1850000], rate=94871.79/min
[1860000], rate=93939.39/min
[1870000], rate=93189.37/min
[1880000], rate=92459.02/min
[1890000], rate=91599.35/min
[1900000], rate=90764.33/min
[1910000], rate=90094.34/min
[1920000], rate=89510.49/min
[1930000], rate=89008.46/min
[1940000], rate=88651.94/min
[1950000], rate=88368.58/min
[1960000], rate=88023.95/min
[1970000], rate=87685.46/min
[1980000], rate=87417.22/min
[1990000], rate=87153.28/min
[2000000], rate=87019.58/min
[2010000], rate=86825.05/min
[2020000], rate=86757.34/min
[2030000], rate=86567.16/min
[2040000], rate=86379.68/min
[2050000], rate=86134.45/min
[2060000], rate=85952.71/min
[2070000], rate=86011.08/min
[2080000], rate=85596.71/min
[2090000], rate=85074.63/min
[2100000], rate=84563.76/min
[2110000], rate=84400.00/min
[2120000], rate=83960.40/min
[2130000], rate=83638.74/min
[2140000], rate=83376.62/min
[2150000], rate=83118.56/min
[2160000], rate=82811.50/min
[2170000], rate=82614.21/min
[2180000], rate=82419.66/min
[2190000], rate=82279.27/min
[2200000], rate=82191.78/min
[2210000], rate=82054.46/min
[2220000], rate=81918.82/min
[2230000], rate=81884.94/min
[2240000], rate=81652.49/min
[2250000], rate=81571.00/min
[2260000], rate=81588.45/min
[2270000], rate=81605.75/min
[2280000], rate=81622.91/min
[2290000], rate=81688.47/min
[2300000], rate=81656.80/min
[2310000], rate=81673.54/min
[2320000], rate=81690.14/min
[2330000], rate=81231.84/min
[2340000], rate=80182.75/min
[2350000], rate=78859.06/min
[2360000], rate=77759.47/min
[2370000], rate=76205.79/min
[2380000], rate=74960.63/min
[2390000], rate=73613.96/min
[2400000], rate=72507.55/min
[2410000], rate=72119.70/min
[2420000], rate=71141.60/min
[2430000], rate=70605.33/min
[2440000], rate=70452.36/min
[2450000], rate=70033.35/min
[2460000], rate=69721.30/min
[2470000], rate=69252.34/min
[2480000], rate=68857.01/min
[2490000], rate=68626.55/min
[2500000], rate=68274.92/min
[2510000], rate=67960.29/min
[2520000], rate=67681.29/min
[2530000], rate=67376.83/min
[2540000], rate=66900.79/min
[2550000], rate=66666.67/min
[2560000], rate=66321.24/min
[2570000], rate=66095.16/min
[2580000], rate=65816.33/min
[2590000], rate=65404.04/min
[2600000], rate=65081.35/min
[2610000], rate=64871.58/min
[2620000], rate=64585.05/min
[2630000], rate=64381.88/min
[2640000], rate=64155.53/min
[2650000], rate=63701.92/min
[2660000], rate=63434.02/min
[2670000], rate=63245.16/min
[2680000], rate=62960.06/min
[2690000], rate=62606.67/min
[2700000], rate=61973.99/min
[2710000], rate=61381.65/min
[2720000], rate=60918.25/min
[2730000], rate=60420.51/min
[2740000], rate=60043.83/min
[2750000], rate=59696.09/min
[2760000], rate=59397.42/min -building interval tree based on /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
[10000], rate=40000.00/min
[20000], rate=42857.14/min
[30000], rate=47368.42/min
[40000], rate=48000.00/min
[50000], rate=48387.10/min
[60000], rate=50704.23/min
[70000], rate=51219.51/min
[80000], rate=51063.83/min
[90000], rate=50943.40/min
[100000], rate=50847.46/min
[110000], rate=51162.79/min
[120000], rate=51428.57/min
[130000], rate=51655.63/min
[140000], rate=51533.74/min
[150000], rate=51724.14/min
[160000], rate=52173.91/min
[170000], rate=52849.74/min
[180000], rate=53201.97/min
[190000], rate=53773.58/min
[200000], rate=54545.45/min
[210000], rate=55506.61/min
[220000], rate=56410.26/min
[230000], rate=57261.41/min
[240000], rate=58064.52/min
[250000], rate=59055.12/min
[260000], rate=59770.11/min
[270000], rate=59340.66/min
[280000], rate=58131.49/min
[290000], rate=56677.52/min
[300000], rate=56074.77/min
[310000], rate=55855.86/min
[320000], rate=55491.33/min
[330000], rate=55462.18/min
[340000], rate=55284.55/min
[350000], rate=54973.82/min
[360000], rate=55102.04/min
[370000], rate=54950.50/min
[380000], rate=54939.76/min
[390000], rate=54800.94/min
[400000], rate=54545.45/min
[410000], rate=54545.45/min
[420000], rate=54427.65/min
[430000], rate=54545.45/min
[440000], rate=54771.78/min
[450000], rate=55102.04/min
[460000], rate=55533.20/min
[470000], rate=55952.38/min
[480000], rate=56360.08/min
[490000], rate=56647.40/min
[500000], rate=57034.22/min
[510000], rate=57303.37/min
[520000], rate=57564.58/min
[530000], rate=58029.20/min
[540000], rate=58483.75/min
[550000], rate=59033.99/min
[560000], rate=59469.03/min
[570000], rate=59790.21/min
[580000], rate=59896.73/min
[590000], rate=59898.48/min
[600000], rate=60000.00/min
[610000], rate=60296.54/min
[620000], rate=60487.80/min
[630000], rate=60869.57/min
[640000], rate=61146.50/min
[650000], rate=61514.20/min
[660000], rate=61875.00/min
[670000], rate=62132.92/min
[680000], rate=62385.32/min
[690000], rate=62632.38/min
[700000], rate=62314.54/min
[710000], rate=62099.13/min
[720000], rate=61891.12/min
[730000], rate=61864.41/min
[740000], rate=61838.44/min
[750000], rate=61898.21/min
[760000], rate=62040.82/min
[770000], rate=62180.35/min
[780000], rate=62316.91/min
[790000], rate=62615.59/min
[800000], rate=62827.23/min
[810000], rate=63035.02/min
[820000], rate=63239.07/min
[830000], rate=63520.41/min
[840000], rate=63716.81/min
[850000], rate=63989.96/min
[860000], rate=64339.15/min
[870000], rate=64925.37/min
[880000], rate=65671.64/min
[890000], rate=66253.10/min
[900000], rate=66666.67/min
[910000], rate=66829.87/min
[920000], rate=67153.28/min
[930000], rate=67718.45/min
[940000], rate=68446.60/min
[950000], rate=68840.58/min
[960000], rate=68735.08/min
[970000], rate=68309.86/min
[980000], rate=68055.56/min
[990000], rate=67808.22/min
[1000000], rate=67491.56/min
[1010000], rate=67258.60/min
[1020000], rate=67031.76/min
[1030000], rate=66955.58/min
[1040000], rate=66952.79/min
[1050000], rate=67021.28/min
[1060000], rate=67017.91/min
[1070000], rate=67154.81/min
[1080000], rate=67219.92/min
[1090000], rate=67422.68/min
[1100000], rate=67692.31/min
[1110000], rate=67820.77/min
[1120000], rate=67947.42/min
[1130000], rate=67529.88/min
[1140000], rate=66993.14/min
[1150000], rate=66410.01/min
[1160000], rate=65660.38/min
[1170000], rate=65000.00/min
[1180000], rate=64894.59/min
[1190000], rate=64324.32/min
[1200000], rate=63886.42/min
[1210000], rate=63130.43/min
[1220000], rate=62671.23/min
[1230000], rate=62173.55/min
[1240000], rate=61691.54/min
[1250000], rate=61475.41/min
[1260000], rate=61214.57/min
[1270000], rate=61008.81/min
[1280000], rate=60615.63/min
[1290000], rate=60516.03/min
[1300000], rate=60371.52/min
[1310000], rate=60229.89/min
[1320000], rate=59863.95/min
[1330000], rate=59730.54/min
[1340000], rate=59732.54/min
[1350000], rate=59515.06/min
[1360000], rate=59388.65/min
[1370000], rate=59179.27/min
[1380000], rate=59312.32/min
[1390000], rate=59232.95/min
[1400000], rate=59071.73/min
[1410000], rate=59036.99/min
[1420000], rate=58961.94/min
[1430000], rate=58847.74/min
[1440000], rate=58735.55/min
[1450000], rate=58783.78/min
[1460000], rate=58713.14/min
[1470000], rate=58526.87/min
[1480000], rate=58305.98/min
[1490000], rate=58355.09/min
[1500000], rate=58327.93/min
[1510000], rate=58263.67/min
[1520000], rate=58200.38/min
[1530000], rate=58138.06/min
[1540000], rate=58113.21/min
[1550000], rate=58125.00/min
[1560000], rate=58136.65/min
[1570000], rate=58076.45/min
[1580000], rate=58123.85/min
[1590000], rate=58206.22/min
[1600000], rate=58181.82/min
[1610000], rate=58262.97/min
[1620000], rate=58378.38/min
[1630000], rate=58492.82/min
[1640000], rate=58606.31/min
[1650000], rate=58614.56/min
[1660000], rate=57906.98/min
[1670000], rate=57355.47/min
[1680000], rate=56629.21/min
[1690000], rate=55929.40/min
[1700000], rate=55555.56/min
[1710000], rate=54836.99/min
[1720000], rate=54516.64/min
[1730000], rate=54175.37/min
[1740000], rate=53814.43/min
[1750000], rate=53571.43/min
[1760000], rate=53252.65/min
[1770000], rate=53073.46/min
[1780000], rate=52923.69/min
[1790000], rate=52854.33/min
[1800000], rate=52734.38/min
[1810000], rate=52616.28/min
[1820000], rate=52500.00/min
[1830000], rate=52435.53/min
[1840000], rate=52371.92/min
[1850000], rate=52358.49/min
[1860000], rate=51738.53/min
[1870000], rate=51467.89/min
[1880000], rate=51436.39/min
[1890000], rate=51451.91/min
[1900000], rate=51490.51/min
[1910000], rate=51528.78/min
[1920000], rate=51589.79/min
[1930000], rate=51673.36/min
[1940000], rate=51733.33/min
[1950000], rate=51792.83/min
[1960000], rate=51897.62/min
[1970000], rate=51978.89/min
[1980000], rate=52059.60/min
[1990000], rate=52139.74/min
[2000000], rate=52219.32/min
[2010000], rate=52298.35/min
[2020000], rate=52331.61/min
[2030000], rate=52522.64/min
[2040000], rate=52577.32/min
[2050000], rate=52631.58/min
[2060000], rate=52707.89/min
[2070000], rate=52783.68/min
[2080000], rate=52881.36/min
[2090000], rate=52556.58/min
[2100000], rate=51937.35/min
[2110000], rate=51421.61/min
[2120000], rate=51063.83/min
[2130000], rate=50454.01/min
[2140000], rate=49864.08/min
[2150000], rate=49482.16/min
[2160000], rate=49146.76/min
[2170000], rate=48837.21/min
[2180000], rate=48498.33/min
[2190000], rate=48184.82/min
[2200000], rate=47947.69/min
[2210000], rate=47697.84/min
[2220000], rate=47537.47/min
[2230000], rate=47262.45/min
[2240000], rate=47075.31/min
[2250000], rate=46858.73/min
[2260000], rate=46678.14/min
[2270000], rate=46516.39/min
[2280000], rate=46388.61/min
[2290000], rate=46231.49/min
[2300000], rate=46107.58/min
[2310000], rate=46031.22/min
[2320000], rate=45955.76/min
[2330000], rate=45866.14/min
[2340000], rate=45837.41/min
[2350000], rate=45883.50/min
[2360000], rate=45854.92/min
[2370000], rate=45826.62/min
[2380000], rate=45798.59/min
[2390000], rate=45800.06/min
[2400000], rate=45801.53/min
[2410000], rate=45832.01/min
[2420000], rate=45833.33/min
[2430000], rate=45849.06/min
[2440000], rate=45850.30/min
[2450000], rate=45880.15/min
[2460000], rate=45938.38/min
[2470000], rate=45953.49/min
[2480000], rate=45996.91/min
[2490000], rate=46025.88/min
[2500000], rate=46068.80/min
[2510000], rate=46111.45/min
[2520000], rate=46167.94/min
[2530000], rate=46210.05/min
[2540000], rate=46265.94/min
[2550000], rate=46307.51/min
[2560000], rate=46362.81/min
[2570000], rate=46431.80/min
[2580000], rate=46486.49/min
[2590000], rate=46568.77/min
[2600000], rate=46636.77/min
[2610000], rate=46718.38/min
[2620000], rate=46799.64/min
[2630000], rate=46894.50/min
[2640000], rate=46975.09/min
[2650000], rate=47083.21/min
[2660000], rate=47163.12/min
[2670000], rate=47159.26/min
[2680000], rate=47003.80/min
[2690000], rate=46918.60/min
[2700000], rate=46820.81/min
[2710000], rate=46724.14/min
[2720000], rate=46655.23/min
[2730000], rate=46587.03/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir --filt_file /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
12000000.00 reads per min processed...
18000000.00 reads per min processed...
12000000.00 reads per min processed...
15000000.00 reads per min processed...
12000000.00 reads per min processed...
14000000.00 reads per min processed...
16000000.00 reads per min processed...
13500000.00 reads per min processed...
15000000.00 reads per min processed...
13200000.00 reads per min processed...
14400000.00 reads per min processed...
15600000.00 reads per min processed...
14000000.00 reads per min processed...
12857142.86 reads per min processed...
12000000.00 reads per min processed...
10200000.00 reads per min processed...
9818181.82 reads per min processed...
9500000.00 reads per min processed...
9230769.23 reads per min processed...
9000000.00 reads per min processed...
8250000.00 reads per min processed...
8117647.06 reads per min processed...
8000000.00 reads per min processed...
7894736.84 reads per min processed...
7800000.00 reads per min processed...
7363636.36 reads per min processed...
7304347.83 reads per min processed...
7250000.00 reads per min processed...
7200000.00 reads per min processed...
6888888.89 reads per min processed...
6857142.86 reads per min processed...
6600000.00 reads per min processed...
6580645.16 reads per min processed...
6562500.00 reads per min processed...
6352941.18 reads per min processed...
6342857.14 reads per min processed...
6333333.33 reads per min processed...
6324324.32 reads per min processed...
6315789.47 reads per min processed...
6150000.00 reads per min processed...
6146341.46 reads per min processed...
6142857.14 reads per min processed...
6139534.88 reads per min processed...
6136363.64 reads per min processed...
6133333.33 reads per min processed...
6000000.00 reads per min processed...
6127659.57 reads per min processed...
6125000.00 reads per min processed...
6250000.00 reads per min processed...
6244897.96 reads per min processed...
6367346.94 reads per min processed...
6360000.00 reads per min processed...
6480000.00 reads per min processed...
6600000.00 reads per min processed...
6588235.29 reads per min processed...
6705882.35 reads per min processed...
6692307.69 reads per min processed...
6807692.31 reads per min processed...
6923076.92 reads per min processed...
6905660.38 reads per min processed...
7018867.92 reads per min processed...
7000000.00 reads per min processed...
6857142.86 reads per min processed...
6842105.26 reads per min processed...
6827586.21 reads per min processed...
6813559.32 reads per min processed...
6800000.00 reads per min processed...
6786885.25 reads per min processed...
6666666.67 reads per min processed...
6656250.00 reads per min processed...
6646153.85 reads per min processed...
6636363.64 reads per min processed...
6529411.76 reads per min processed...
6521739.13 reads per min processed...
6514285.71 reads per min processed...
6416666.67 reads per min processed...
6410958.90 reads per min processed...
6405405.41 reads per min processed...
6400000.00 reads per min processed...
6394736.84 reads per min processed...
6307692.31 reads per min processed...
6303797.47 reads per min processed...
6300000.00 reads per min processed...
6296296.30 reads per min processed...
6292682.93 reads per min processed...
6289156.63 reads per min processed...
6211764.71 reads per min processed...
6209302.33 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.WfNGDdQq8M/aih-tih-sc-c55577-R1_B23WHYVLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -199460.943949
EM: Round [1] log likelihood: -199280.524309
EM: Round [2] log likelihood: -199218.802261
EM: Round [3] log likelihood: -199190.537461
EM: Round [4] log likelihood: -199175.673714
EM: Round [5] log likelihood: -199167.229449
EM: Round [6] log likelihood: -199162.158638
EM: Round [7] log likelihood: -199158.959811
EM: Round [8] log likelihood: -199156.846843
EM: Round [9] log likelihood: -199155.391091
EM: Round [10] log likelihood: -199154.349890
EM: Round [11] log likelihood: -199153.580559
EM: Round [12] log likelihood: -199152.995995
EM: Round [13] log likelihood: -199152.541060
EM: Round [14] log likelihood: -199152.179654
EM: Round [15] log likelihood: -199151.887407
EM: Round [16] log likelihood: -199151.647403
EM: Round [17] log likelihood: -199151.447615
EM: Round [18] log likelihood: -199151.279308
EM: Round [19] log likelihood: -199151.136013
EM: Round [20] log likelihood: -199151.012857
EM: Round [21] log likelihood: -199150.906118
EM: Round [22] log likelihood: -199150.812909
EM: Round [23] log likelihood: -199150.730963
EM: Round [24] log likelihood: -199150.658483
EM: Round [25] log likelihood: -199150.594024
EM: Round [26] log likelihood: -199150.536416
EM: Round [27] log likelihood: -199150.484702
EM: Round [28] log likelihood: -199150.438092
EM: Round [29] log likelihood: -199150.395931
EM: Round [30] log likelihood: -199150.357666
EM: Round [31] log likelihood: -199150.322835
EM: Round [32] log likelihood: -199150.291042
EM: Round [33] log likelihood: -199150.261951
EM: Round [34] log likelihood: -199150.235273
EM: Round [35] log likelihood: -199150.210756
EM: Round [36] log likelihood: -199150.188183
EM: Round [37] log likelihood: -199150.167365
EM: Round [38] log likelihood: -199150.148134
EM: Round [39] log likelihood: -199150.130345
EM: Round [40] log likelihood: -199150.113866
EM: Round [41] log likelihood: -199150.098585
EM: Round [42] log likelihood: -199150.084396
EM: Round [43] log likelihood: -199150.071210
EM: Round [44] log likelihood: -199150.058942
EM: Round [45] log likelihood: -199150.047521
EM: Round [46] log likelihood: -199150.036877
EM: Round [47] log likelihood: -199150.026952
EM: Round [48] log likelihood: -199150.017690
EM: Round [49] log likelihood: -199150.009042
EM: Round [50] log likelihood: -199150.000961
EM: Round [51] log likelihood: -199149.993407
EM: Round [52] log likelihood: -199149.986342
EM: Round [53] log likelihood: -199149.979730
EM: Round [54] log likelihood: -199149.973540
EM: Round [55] log likelihood: -199149.967742
EM: Round [56] log likelihood: -199149.962310
EM: Round [57] log likelihood: -199149.957218
EM: Round [58] log likelihood: -199149.952444
EM: Round [59] log likelihood: -199149.947966
EM: Round [60] log likelihood: -199149.943764
EM: Round [61] log likelihood: -199149.939821
EM: Round [62] log likelihood: -199149.936119
EM: Round [63] log likelihood: -199149.932642
EM: Round [64] log likelihood: -199149.929377
EM: Round [65] log likelihood: -199149.926308
EM: Round [66] log likelihood: -199149.923425
EM: Round [67] log likelihood: -199149.920715
EM: Round [68] log likelihood: -199149.918166
EM: Round [69] log likelihood: -199149.915770
EM: Round [70] log likelihood: -199149.913516
EM: Round [71] log likelihood: -199149.911395
EM: Round [72] log likelihood: -199149.909400
EM: Round [73] log likelihood: -199149.907522
EM: Round [74] log likelihood: -199149.905754
EM: Round [75] log likelihood: -199149.904090
EM: Round [76] log likelihood: -199149.902522
EM: Round [77] log likelihood: -199149.901046
EM: Round [78] log likelihood: -199149.899655
EM: Round [79] log likelihood: -199149.898345
EM: Round [80] log likelihood: -199149.897110
EM: Round [81] log likelihood: -199149.895947
EM: Round [82] log likelihood: -199149.894850
EM: Round [83] log likelihood: -199149.893815
EM: Round [84] log likelihood: -199149.892840
EM: Round [85] log likelihood: -199149.891920
EM: Round [86] log likelihood: -199149.891052
EM: Round [87] log likelihood: -199149.890233
EM: Round [88] log likelihood: -199149.889461
EM: Round [89] log likelihood: -199149.888731
EM: Round [90] log likelihood: -199149.888043
EM: Round [91] log likelihood: -199149.887393
EM: Round [92] log likelihood: -199149.886779
EM: Round [93] log likelihood: -199149.886199
EM: Round [94] log likelihood: -199149.885652
EM: Round [95] log likelihood: -199149.885134
EM: Round [96] log likelihood: -199149.884645
EM: Round [97] log likelihood: -199149.884183
EM: Round [98] log likelihood: -199149.883746
EM: Round [99] log likelihood: -199149.883333
EM: Round [100] log likelihood: -199149.882943
EM: Round [101] log likelihood: -199149.882573
EM: Round [102] log likelihood: -199149.882223
EM: Round [103] log likelihood: -199149.881893
EM: Round [104] log likelihood: -199149.881579
EM: Round [105] log likelihood: -199149.881283
EM: Round [106] log likelihood: -199149.881002
EM: Round [107] log likelihood: -199149.880736
EM: Round [108] log likelihood: -199149.880485
EM: Round [109] log likelihood: -199149.880246
EM: Round [110] log likelihood: -199149.880020
EM: Round [111] log likelihood: -199149.879806
EM: Round [112] log likelihood: -199149.879603
EM: Round [113] log likelihood: -199149.879410
EM: Round [114] log likelihood: -199149.879227
EM: Round [115] log likelihood: -199149.879054
EM: Round [116] log likelihood: -199149.878889
EM: Round [117] log likelihood: -199149.878733
EM: Round [118] log likelihood: -199149.878585
EM: Round [119] log likelihood: -199149.878444
EM: Round [120] log likelihood: -199149.878310
EM: Round [121] log likelihood: -199149.878183
EM: Round [122] log likelihood: -199149.878063
EM: Round [123] log likelihood: -199149.877948
EM: Round [124] log likelihood: -199149.877839
EM: Round [125] log likelihood: -199149.877735
EM: Round [126] log likelihood: -199149.877636
EM: Stopping iterations at round 126 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -199109.265518
EM: Round [1] log likelihood: -198954.316353
EM: Round [2] log likelihood: -198902.647075
EM: Round [3] log likelihood: -198879.659578
EM: Round [4] log likelihood: -198867.878228
EM: Round [5] log likelihood: -198861.322882
EM: Round [6] log likelihood: -198857.457309
EM: Round [7] log likelihood: -198855.061409
EM: Round [8] log likelihood: -198853.506968
EM: Round [9] log likelihood: -198852.455409
EM: Round [10] log likelihood: -198851.716845
EM: Round [11] log likelihood: -198851.180620
EM: Round [12] log likelihood: -198850.779815
EM: Round [13] log likelihood: -198850.472512
EM: Round [14] log likelihood: -198850.231587
EM: Round [15] log likelihood: -198850.038960
EM: Round [16] log likelihood: -198849.882259
EM: Round [17] log likelihood: -198849.752813
EM: Round [18] log likelihood: -198849.644417
EM: Round [19] log likelihood: -198849.552546
EM: Round [20] log likelihood: -198849.473844
EM: Round [21] log likelihood: -198849.405778
EM: Round [22] log likelihood: -198849.346414
EM: Round [23] log likelihood: -198849.294252
EM: Round [24] log likelihood: -198849.248113
EM: Round [25] log likelihood: -198849.207060
EM: Round [26] log likelihood: -198849.170343
EM: Round [27] log likelihood: -198849.137349
EM: Round [28] log likelihood: -198849.107577
EM: Round [29] log likelihood: -198849.080613
EM: Round [30] log likelihood: -198849.056111
EM: Round [31] log likelihood: -198849.033779
EM: Round [32] log likelihood: -198849.013370
EM: Round [33] log likelihood: -198848.994673
EM: Round [34] log likelihood: -198848.977508
EM: Round [35] log likelihood: -198848.961717
EM: Round [36] log likelihood: -198848.947164
EM: Round [37] log likelihood: -198848.933730
EM: Round [38] log likelihood: -198848.921312
EM: Round [39] log likelihood: -198848.909816
EM: Round [40] log likelihood: -198848.899161
EM: Round [41] log likelihood: -198848.889275
EM: Round [42] log likelihood: -198848.880093
EM: Round [43] log likelihood: -198848.871556
EM: Round [44] log likelihood: -198848.863613
EM: Round [45] log likelihood: -198848.856216
EM: Round [46] log likelihood: -198848.849323
EM: Round [47] log likelihood: -198848.842896
EM: Round [48] log likelihood: -198848.836899
EM: Round [49] log likelihood: -198848.831300
EM: Round [50] log likelihood: -198848.826071
EM: Round [51] log likelihood: -198848.821185
EM: Round [52] log likelihood: -198848.816616
EM: Round [53] log likelihood: -198848.812344
EM: Round [54] log likelihood: -198848.808347
EM: Round [55] log likelihood: -198848.804606
EM: Round [56] log likelihood: -198848.801103
EM: Round [57] log likelihood: -198848.797823
EM: Round [58] log likelihood: -198848.794751
EM: Round [59] log likelihood: -198848.791872
EM: Round [60] log likelihood: -198848.789174
EM: Round [61] log likelihood: -198848.786645
EM: Round [62] log likelihood: -198848.784274
EM: Round [63] log likelihood: -198848.782050
EM: Round [64] log likelihood: -198848.779965
EM: Round [65] log likelihood: -198848.778008
EM: Round [66] log likelihood: -198848.776172
EM: Round [67] log likelihood: -198848.774450
EM: Round [68] log likelihood: -198848.772833
EM: Round [69] log likelihood: -198848.771315
EM: Round [70] log likelihood: -198848.769891
EM: Round [71] log likelihood: -198848.768553
EM: Round [72] log likelihood: -198848.767297
EM: Round [73] log likelihood: -198848.766117
EM: Round [74] log likelihood: -198848.765009
EM: Round [75] log likelihood: -198848.763969
EM: Round [76] log likelihood: -198848.762991
EM: Round [77] log likelihood: -198848.762073
EM: Round [78] log likelihood: -198848.761210
EM: Round [79] log likelihood: -198848.760399
EM: Round [80] log likelihood: -198848.759637
EM: Round [81] log likelihood: -198848.758921
EM: Round [82] log likelihood: -198848.758248
EM: Round [83] log likelihood: -198848.757615
EM: Round [84] log likelihood: -198848.757020
EM: Round [85] log likelihood: -198848.756461
EM: Round [86] log likelihood: -198848.755935
EM: Round [87] log likelihood: -198848.755441
EM: Round [88] log likelihood: -198848.754976
EM: Round [89] log likelihood: -198848.754538
EM: Round [90] log likelihood: -198848.754127
EM: Round [91] log likelihood: -198848.753740
EM: Round [92] log likelihood: -198848.753377
EM: Round [93] log likelihood: -198848.753034
EM: Round [94] log likelihood: -198848.752712
EM: Round [95] log likelihood: -198848.752409
EM: Round [96] log likelihood: -198848.752124
EM: Round [97] log likelihood: -198848.751856
EM: Round [98] log likelihood: -198848.751604
EM: Round [99] log likelihood: -198848.751366
EM: Round [100] log likelihood: -198848.751143
EM: Round [101] log likelihood: -198848.750932
EM: Round [102] log likelihood: -198848.750734
EM: Round [103] log likelihood: -198848.750547
EM: Round [104] log likelihood: -198848.750372
EM: Round [105] log likelihood: -198848.750206
EM: Round [106] log likelihood: -198848.750051
EM: Round [107] log likelihood: -198848.749904
EM: Round [108] log likelihood: -198848.749766
EM: Round [109] log likelihood: -198848.749636
EM: Round [110] log likelihood: -198848.749513
EM: Round [111] log likelihood: -198848.749398
EM: Round [112] log likelihood: -198848.749289
EM: Round [113] log likelihood: -198848.749186
EM: Round [114] log likelihood: -198848.749090
EM: Stopping iterations at round 114 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 194170457 > /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir > /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir --annotate /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir
-done, see /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1678, filtered: 8528)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.WfNGDdQq8M/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.WfNGDdQq8M/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227722.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000281103.2]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000284648.1]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000241278.1]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000286675.1]
WARNING, no entry stored in dbm for [ENSG00000251557.2]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000226310.1]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [ENSG00000286953.1]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000242697.2]
WARNING, no entry stored in dbm for [ENSG00000224252.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000231806.3]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000232063.2]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000232226.2]
WARNING, no entry stored in dbm for [ENSG00000254349.6]
WARNING, no entry stored in dbm for [ENSG00000243926.2]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000286458.1]
WARNING, no entry stored in dbm for [ENSG00000254224.2]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000270780.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000268034.1]
WARNING, no entry stored in dbm for [ENSG00000183199.6]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000284648.1]
WARNING, no entry stored in dbm for [ENSG00000284610.1]
WARNING, no entry stored in dbm for [ENSG00000260693.1]
WARNING, no entry stored in dbm for [ENSG00000235583.2]
WARNING, no entry stored in dbm for [ENSG00000239224.3]
WARNING, no entry stored in dbm for [ENSG00000237004.4]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000233987.2]
WARNING, no entry stored in dbm for [ENSG00000234420.7]
WARNING, no entry stored in dbm for [ENSG00000263072.8]
WARNING, no entry stored in dbm for [ENSG00000267640.6]
WARNING, no entry stored in dbm for [ENSG00000272170.1]
WARNING, no entry stored in dbm for [ENSG00000228620.1]
WARNING, no entry stored in dbm for [ENSG00000236994.1]
WARNING, no entry stored in dbm for [ENSG00000241743.4]
WARNING, no entry stored in dbm for [ENSG00000226067.7]
WARNING, no entry stored in dbm for [ENSG00000262445.3]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000229124.7]
WARNING, no entry stored in dbm for [ENSG00000223650.1]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000203993.6]
WARNING, no entry stored in dbm for [ENSG00000273272.2]
WARNING, no entry stored in dbm for [ENSG00000186493.14]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000264113.2]
WARNING, no entry stored in dbm for [ENSG00000180438.15]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000284977.2]
WARNING, no entry stored in dbm for [ENSG00000256756.1]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000177133.11]
WARNING, no entry stored in dbm for [ENSG00000203993.6]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000226823.1]
WARNING, no entry stored in dbm for [ENSG00000231057.4]
WARNING, no entry stored in dbm for [ENSG00000284740.1]
WARNING, no entry stored in dbm for [ENSG00000234106.3]
WARNING, no entry stored in dbm for [ENSG00000280418.1]
WARNING, no entry stored in dbm for [ENSG00000233399.2]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000203875.13]
WARNING, no entry stored in dbm for [ENSG00000250786.2]
WARNING, no entry stored in dbm for [ENSG00000247157.7]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000248727.6]
WARNING, no entry stored in dbm for [ENSG00000232803.1]
WARNING, no entry stored in dbm for [ENSG00000223806.8]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000241529.3]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000243951.1]
WARNING, no entry stored in dbm for [ENSG00000189223.15]
WARNING, no entry stored in dbm for [ENSG00000242299.1]
WARNING, no entry stored in dbm for [ENSG00000267083.1]
WARNING, no entry stored in dbm for [ENSG00000245958.6]
WARNING, no entry stored in dbm for [ENSG00000236679.2]
WARNING, no entry stored in dbm for [ENSG00000262898.3]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000263745.7]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000196183.5]
WARNING, no entry stored in dbm for [ENSG00000232163.2]
WARNING, no entry stored in dbm for [ENSG00000232393.1]
WARNING, no entry stored in dbm for [ENSG00000227694.1]
WARNING, no entry stored in dbm for [ENSG00000241081.1]
WARNING, no entry stored in dbm for [ENSG00000234559.1]
WARNING, no entry stored in dbm for [ENSG00000232463.1]
WARNING, no entry stored in dbm for [ENSG00000207205.1]
WARNING, no entry stored in dbm for [ENSG00000202174.1]
WARNING, no entry stored in dbm for [ENSG00000199831.1]
WARNING, no entry stored in dbm for [ENSG00000200312.1]
WARNING, no entry stored in dbm for [ENSG00000200488.1]
WARNING, no entry stored in dbm for [ENSG00000200488.1]
WARNING, no entry stored in dbm for [ENSG00000225205.5]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000271858.5]
WARNING, no entry stored in dbm for [ENSG00000180581.7]
WARNING, no entry stored in dbm for [ENSG00000258545.6]
WARNING, no entry stored in dbm for [ENSG00000268287.1]
WARNING, no entry stored in dbm for [ENSG00000281398.4]
WARNING, no entry stored in dbm for [ENSG00000288531.1]
WARNING, no entry stored in dbm for [ENSG00000224078.15]
WARNING, no entry stored in dbm for [ENSG00000234998.1]
WARNING, no entry stored in dbm for [ENSG00000254777.5]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [ENSG00000226965.2]
WARNING, no entry stored in dbm for [ENSG00000285752.1]
WARNING, no entry stored in dbm for [ENSG00000287516.1]
WARNING, no entry stored in dbm for [ENSG00000227205.4]
WARNING, no entry stored in dbm for [ENSG00000272170.1]
WARNING, no entry stored in dbm for [ENSG00000287643.1]
WARNING, no entry stored in dbm for [ENSG00000243064.8]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [ENSG00000286887.1]
WARNING, no entry stored in dbm for [ENSG00000267058.1]
WARNING, no entry stored in dbm for [ENSG00000223891.6]
WARNING, no entry stored in dbm for [ENSG00000254166.3]
WARNING, no entry stored in dbm for [ENSG00000228960.6]
WARNING, no entry stored in dbm for [ENSG00000247556.6]
WARNING, no entry stored in dbm for [ENSG00000249419.1]
WARNING, no entry stored in dbm for [ENSG00000223482.8]
WARNING, no entry stored in dbm for [ENSG00000248008.3]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000226232.8]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000266916.7]
WARNING, no entry stored in dbm for [ENSG00000244041.7]
WARNING, no entry stored in dbm for [ENSG00000234226.5]
WARNING, no entry stored in dbm for [ENSG00000237037.9]
WARNING, no entry stored in dbm for [ENSG00000237037.9]
WARNING, no entry stored in dbm for [ENSG00000239213.6]
WARNING, no entry stored in dbm for [ENSG00000231382.1]
WARNING, no entry stored in dbm for [ENSG00000234524.1]
WARNING, no entry stored in dbm for [ENSG00000280832.1]
WARNING, no entry stored in dbm for [ENSG00000235640.1]
WARNING, no entry stored in dbm for [ENSG00000275340.1]
WARNING, no entry stored in dbm for [ENSG00000228323.2]
WARNING, no entry stored in dbm for [ENSG00000288549.1]
WARNING, no entry stored in dbm for [ENSG00000271860.7]
WARNING, no entry stored in dbm for [ENSG00000241168.1]
WARNING, no entry stored in dbm for [ENSG00000275691.2]
WARNING, no entry stored in dbm for [ENSG00000205361.8]
WARNING, no entry stored in dbm for [ENSG00000232722.3]
WARNING, no entry stored in dbm for [ENSG00000276715.4]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000234231.4]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000283611.2]
WARNING, no entry stored in dbm for [ENSG00000232442.1]
WARNING, no entry stored in dbm for [ENSG00000283240.1]
WARNING, no entry stored in dbm for [ENSG00000272170.1]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000232956.9]
WARNING, no entry stored in dbm for [ENSG00000272578.5]
WARNING, no entry stored in dbm for [ENSG00000261490.1]
WARNING, no entry stored in dbm for [ENSG00000232709.1]
WARNING, no entry stored in dbm for [ENSG00000231312.7]
WARNING, no entry stored in dbm for [ENSG00000283283.2]
WARNING, no entry stored in dbm for [ENSG00000243004.6]
WARNING, no entry stored in dbm for [ENSG00000275716.1]
WARNING, no entry stored in dbm for [ENSG00000093100.13]
WARNING, no entry stored in dbm for [ENSG00000271538.6]
WARNING, no entry stored in dbm for [ENSG00000281903.2]
WARNING, no entry stored in dbm for [ENSG00000234663.7]
WARNING, no entry stored in dbm for [ENSG00000279579.3]
WARNING, no entry stored in dbm for [ENSG00000261008.7]
WARNING, no entry stored in dbm for [ENSG00000233621.2]
WARNING, no entry stored in dbm for [ENSG00000249816.7]
WARNING, no entry stored in dbm for [ENSG00000235703.6]
WARNING, no entry stored in dbm for [ENSG00000215190.9]
WARNING, no entry stored in dbm for [ENSG00000235621.9]
WARNING, no entry stored in dbm for [ENSG00000236790.6]
WARNING, no entry stored in dbm for [ENSG00000231028.9]
WARNING, no entry stored in dbm for [ENSG00000259974.3]
WARNING, no entry stored in dbm for [ENSG00000196668.4]
WARNING, no entry stored in dbm for [ENSG00000283945.1]
WARNING, no entry stored in dbm for [ENSG00000226696.6]
WARNING, no entry stored in dbm for [ENSG00000287958.1]
WARNING, no entry stored in dbm for [ENSG00000226806.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000214514.8]
WARNING, no entry stored in dbm for [ENSG00000257703.6]
WARNING, no entry stored in dbm for [ENSG00000253362.1]
WARNING, no entry stored in dbm for [ENSG00000233652.1]
WARNING, no entry stored in dbm for [ENSG00000277304.1]
WARNING, no entry stored in dbm for [ENSG00000174912.7]
WARNING, no entry stored in dbm for [ENSG00000266385.1]
WARNING, no entry stored in dbm for [ENSG00000224548.1]
WARNING, no entry stored in dbm for [ENSG00000198054.12]
WARNING, no entry stored in dbm for [ENSG00000225636.1]
WARNING, no entry stored in dbm for [ENSG00000250826.2]
WARNING, no entry stored in dbm for [ENSG00000255920.3]
WARNING, no entry stored in dbm for [ENSG00000230547.1]
WARNING, no entry stored in dbm for [ENSG00000217482.2]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000248785.1]
WARNING, no entry stored in dbm for [ENSG00000233299.1]
WARNING, no entry stored in dbm for [ENSG00000286480.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000249572.1]
WARNING, no entry stored in dbm for [ENSG00000254236.1]
WARNING, no entry stored in dbm for [ENSG00000226002.1]
WARNING, no entry stored in dbm for [ENSG00000227113.2]
WARNING, no entry stored in dbm for [ENSG00000255082.1]
WARNING, no entry stored in dbm for [ENSG00000250115.2]
WARNING, no entry stored in dbm for [ENSG00000267083.1]
WARNING, no entry stored in dbm for [ENSG00000220494.4]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000275110.1]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000239533.6]
WARNING, no entry stored in dbm for [ENSG00000250959.2]
WARNING, no entry stored in dbm for [ENSG00000131002.12]
WARNING, no entry stored in dbm for [ENSG00000187621.15]
WARNING, no entry stored in dbm for [ENSG00000255126.1]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000200434.1]
WARNING, no entry stored in dbm for [ENSG00000234709.2]
WARNING, no entry stored in dbm for [ENSG00000234890.1]
WARNING, no entry stored in dbm for [ENSG00000231976.8]
WARNING, no entry stored in dbm for [ENSG00000231584.8]
WARNING, no entry stored in dbm for [ENSG00000228429.1]
WARNING, no entry stored in dbm for [ENSG00000179406.8]
WARNING, no entry stored in dbm for [ENSG00000120664.11]
WARNING, no entry stored in dbm for [ENSG00000234690.7]
WARNING, no entry stored in dbm for [ENSG00000235499.1]
WARNING, no entry stored in dbm for [ENSG00000180385.8]
WARNING, no entry stored in dbm for [ENSG00000240024.5]
WARNING, no entry stored in dbm for [ENSG00000179523.5]
WARNING, no entry stored in dbm for [ENSG00000228184.1]
WARNING, no entry stored in dbm for [ENSG00000220583.1]
WARNING, no entry stored in dbm for [ENSG00000236991.6]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000243701.7]
WARNING, no entry stored in dbm for [ENSG00000287632.1]
WARNING, no entry stored in dbm for [ENSG00000234369.1]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000286956.1]
WARNING, no entry stored in dbm for [ENSG00000235706.8]
WARNING, no entry stored in dbm for [ENSG00000229337.2]
WARNING, no entry stored in dbm for [ENSG00000287640.1]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000267241.2]
WARNING, no entry stored in dbm for [ENSG00000285646.2]
WARNING, no entry stored in dbm for [ENSG00000280594.1]
WARNING, no entry stored in dbm for [ENSG00000236948.2]
WARNING, no entry stored in dbm for [ENSG00000276077.4]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000259704.2]
WARNING, no entry stored in dbm for [ENSG00000272888.7]
WARNING, no entry stored in dbm for [ENSG00000230979.3]
WARNING, no entry stored in dbm for [ENSG00000226445.2]
WARNING, no entry stored in dbm for [ENSG00000256075.1]
WARNING, no entry stored in dbm for [ENSG00000253396.1]
WARNING, no entry stored in dbm for [ENSG00000262135.1]
WARNING, no entry stored in dbm for [ENSG00000201648.1]
WARNING, no entry stored in dbm for [ENSG00000199313.1]
WARNING, no entry stored in dbm for [ENSG00000202538.1]
WARNING, no entry stored in dbm for [ENSG00000200795.1]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000197744.5]
WARNING, no entry stored in dbm for [ENSG00000224186.8]
WARNING, no entry stored in dbm for [ENSG00000285413.1]
WARNING, no entry stored in dbm for [ENSG00000238062.6]
WARNING, no entry stored in dbm for [ENSG00000237436.1]
WARNING, no entry stored in dbm for [ENSG00000186312.10]
WARNING, no entry stored in dbm for [ENSG00000265630.2]
WARNING, no entry stored in dbm for [ENSG00000279649.1]
WARNING, no entry stored in dbm for [ENSG00000258948.2]
WARNING, no entry stored in dbm for [ENSG00000223612.3]
WARNING, no entry stored in dbm for [ENSG00000229358.3]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000228314.1]
WARNING, no entry stored in dbm for [ENSG00000284639.1]
WARNING, no entry stored in dbm for [ENSG00000232677.9]
WARNING, no entry stored in dbm for [ENSG00000261070.1]
WARNING, no entry stored in dbm for [ENSG00000266373.1]
WARNING, no entry stored in dbm for [ENSG00000266373.1]
WARNING, no entry stored in dbm for [ENSG00000239415.1]
WARNING, no entry stored in dbm for [ENSG00000227615.1]
WARNING, no entry stored in dbm for [ENSG00000156755.10]
WARNING, no entry stored in dbm for [ENSG00000226043.2]
WARNING, no entry stored in dbm for [ENSG00000285535.2]
WARNING, no entry stored in dbm for [ENSG00000257515.1]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000215067.10]
WARNING, no entry stored in dbm for [ENSG00000242834.1]
WARNING, no entry stored in dbm for [ENSG00000285799.1]
WARNING, no entry stored in dbm for [ENSG00000254741.1]
WARNING, no entry stored in dbm for [ENSG00000286198.1]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000280222.1]
WARNING, no entry stored in dbm for [ENSG00000272068.1]
WARNING, no entry stored in dbm for [ENSG00000227683.1]
WARNING, no entry stored in dbm for [ENSG00000278531.1]
WARNING, no entry stored in dbm for [ENSG00000287443.1]
WARNING, no entry stored in dbm for [ENSG00000286215.1]
WARNING, no entry stored in dbm for [ENSG00000234648.1]
WARNING, no entry stored in dbm for [ENSG00000232573.1]
WARNING, no entry stored in dbm for [ENSG00000288526.1]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000236166.1]
WARNING, no entry stored in dbm for [ENSG00000226308.1]
WARNING, no entry stored in dbm for [ENSG00000226812.2]
WARNING, no entry stored in dbm for [ENSG00000272491.1]
WARNING, no entry stored in dbm for [ENSG00000274760.1]
WARNING, no entry stored in dbm for [ENSG00000230912.1]
WARNING, no entry stored in dbm for [ENSG00000274270.1]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000228918.4]
WARNING, no entry stored in dbm for [ENSG00000275103.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000279278.1]
WARNING, no entry stored in dbm for [ENSG00000234981.1]
WARNING, no entry stored in dbm for [ENSG00000226448.1]
WARNING, no entry stored in dbm for [ENSG00000275557.1]
WARNING, no entry stored in dbm for [ENSG00000233101.10]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000260648.3]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000265055.2]
WARNING, no entry stored in dbm for [ENSG00000215154.6]
WARNING, no entry stored in dbm for [ENSG00000274730.1]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000244144.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000284727.1]
WARNING, no entry stored in dbm for [ENSG00000248114.1]
WARNING, no entry stored in dbm for [ENSG00000278791.1]
WARNING, no entry stored in dbm for [ENSG00000248376.2]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000259867.6]
WARNING, no entry stored in dbm for [ENSG00000249642.2]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
WARNING, no entry stored in dbm for [ENSG00000284648.1]
WARNING, no entry stored in dbm for [ENSG00000242759.8]
WARNING, no entry stored in dbm for [ENSG00000228303.1]
WARNING, no entry stored in dbm for [ENSG00000284624.1]
WARNING, no entry stored in dbm for [ENSG00000267696.6]
WARNING, no entry stored in dbm for [ENSG00000284624.1]
WARNING, no entry stored in dbm for [ENSG00000287839.1]
WARNING, no entry stored in dbm for [ENSG00000284624.1]
WARNING, no entry stored in dbm for [ENSG00000284294.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000268362.6]
WARNING, no entry stored in dbm for [ENSG00000260290.2]
WARNING, no entry stored in dbm for [ENSG00000259721.1]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000280362.1]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000228010.6]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000286675.1]
WARNING, no entry stored in dbm for [ENSG00000287301.1]
WARNING, no entry stored in dbm for [ENSG00000185641.6]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000287677.2]
WARNING, no entry stored in dbm for [ENSG00000255621.1]
WARNING, no entry stored in dbm for [ENSG00000248898.3]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000231409.3]
WARNING, no entry stored in dbm for [ENSG00000226107.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000226380.9]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000258017.2]
WARNING, no entry stored in dbm for [ENSG00000213291.3]
WARNING, no entry stored in dbm for [ENSG00000287689.1]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000275880.1]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000287705.1]
WARNING, no entry stored in dbm for [ENSG00000238045.9]
WARNING, no entry stored in dbm for [ENSG00000287263.1]
WARNING, no entry stored in dbm for [ENSG00000248406.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000267121.6]
WARNING, no entry stored in dbm for [ENSG00000268401.2]
WARNING, no entry stored in dbm for [ENSG00000269745.1]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000243554.1]
WARNING, no entry stored in dbm for [ENSG00000267698.1]
WARNING, no entry stored in dbm for [ENSG00000224081.9]
* STAR-Fusion complete. See output: /tmp/nxf.WfNGDdQq8M/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)