AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 141
Pass (FILTER=PASS): 5 (3.5%)
Fail (FILTER=FAIL): 136 (96.5%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 6
All 6 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 23
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 22
confidence_below_min(low<high): 17
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 13
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 11
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(low<high);aih_curated_blacklist: 2
Breakdown by confidence:
high: 5 pass, 1 fail (total: 6)
low: 0 pass, 59 fail (total: 59)
medium: 0 pass, 76 fail (total: 76)
Arriba filter: 141 rows -> 5 PASS; wrote aih-tih-sc-446670-R1_B23WHYVLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-446670-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-446670-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt