Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/b8741e5b983523657d189285c91962/aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/d7b7ccc2a38ec3ac0fea5d427e55bd/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/d7b7ccc2a38ec3ac0fea5d427e55bd/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:51:05.507 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:51:05 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:51:05 GMT 2026] Executing as ?@nf-96d7b7ccc2a38ec3ac0fea5d427e55bd-67764-jlmxs on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:51:05 MarkDuplicates Start of doWork freeMemory: 105493320; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:51:05 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:51:05 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,709,470
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 2849 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:7,827,122
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 5952 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:9,580,036
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 8401 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:12,192,882
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 11046 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:15,933,424
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 13860 as yet unmatched pairs. 457 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:19,124,576
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 16071 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:21,736,577
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 18633 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:21,887,219
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 22180 as yet unmatched pairs. 785 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:23,695,810
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 24407 as yet unmatched pairs. 390 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:26,761,039
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 27131 as yet unmatched pairs. 598 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:28,201,339
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 29340 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:31,910,054
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 32282 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,526
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 35540 as yet unmatched pairs. 1060 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:37,969,682
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 37310 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:39,575,772
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 39792 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:43,426,662
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 42237 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:45,847,107
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 45122 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:51,405,971
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 47827 as yet unmatched pairs. 529 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:54,852,352
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 50124 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:61,861,554
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 52853 as yet unmatched pairs. 395 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:71,065,128
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 55145 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:85,581,389
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 58765 as yet unmatched pairs. 1474 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:91,712,263
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 60515 as yet unmatched pairs. 652 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:96,812,738
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 62687 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:109,173,570
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 64757 as yet unmatched pairs. 614 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:111,697,439
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 67052 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:114,402,796
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 69854 as yet unmatched pairs. 692 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:117,112,355
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 71778 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:119,921,765
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 75133 as yet unmatched pairs. 1002 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:120,524,085
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 76583 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:145,855,789
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 78528 as yet unmatched pairs. 911 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:146,133,671
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 79896 as yet unmatched pairs. 417 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:147,613,153
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 80898 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:148,607,664
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 81670 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:150,077,438
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 83246 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:150,733,030
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 86054 as yet unmatched pairs. 515 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:151,408,724
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 88191 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:153,816,386
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 90851 as yet unmatched pairs. 635 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:154,235,254
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 92728 as yet unmatched pairs. 310 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:155,068,880
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 95015 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:155,357,586
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 97419 as yet unmatched pairs. 446 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:155,914,068
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 99174 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,368
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 105017 as yet unmatched pairs. 2453 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,700,949
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 106165 as yet unmatched pairs. 764 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:160,217,552
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 108546 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,727
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 111937 as yet unmatched pairs. 1424 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:168,004,656
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 113371 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,421
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 116636 as yet unmatched pairs. 1358 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:178,451,609
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 117801 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:182,388,603
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 121683 as yet unmatched pairs. 1515 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:186,087,311
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 122844 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:186,353,683
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 126284 as yet unmatched pairs. 1536 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:200,848,598
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 127240 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:202,941,587
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 129713 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:203,852,267
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 134718 as yet unmatched pairs. 2814 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:206,696,166
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 134401 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:212,615,204
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 136898 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:223,553,860
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 139286 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:225,859,266
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 142007 as yet unmatched pairs. 608 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:229,271,313
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 144301 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:235,448,426
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 147064 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:243,563,829
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 150682 as yet unmatched pairs. 1456 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:248,847,433
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 151937 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:10,668,659
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 154759 as yet unmatched pairs. 154240 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:20,263,269
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 157290 as yet unmatched pairs. 156762 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:24,739,519
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 159896 as yet unmatched pairs. 159363 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:27,337,269
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 162442 as yet unmatched pairs. 161895 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:28,942,337
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 164921 as yet unmatched pairs. 164372 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,257
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 232290 as yet unmatched pairs. 161950 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 620593 as yet unmatched pairs. 140338 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,354
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 1215047 as yet unmatched pairs. 107207 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 1302422 as yet unmatched pairs. 102002 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,451
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 1387906 as yet unmatched pairs. 97244 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:38,318,947
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 1389302 as yet unmatched pairs. 95091 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,160
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 1387455 as yet unmatched pairs. 93234 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:46,376,587
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 1384600 as yet unmatched pairs. 90370 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:54,621,479
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 1383709 as yet unmatched pairs. 89474 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:55,050,029
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1379682 as yet unmatched pairs. 85435 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:61,347,899
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1376820 as yet unmatched pairs. 82573 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:68,822,489
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1374018 as yet unmatched pairs. 79768 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:73,001,534
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 1371667 as yet unmatched pairs. 77401 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:74,527,762
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 1369529 as yet unmatched pairs. 75262 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:86,485,745
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 1366324 as yet unmatched pairs. 72053 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:95,853,696
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 1365414 as yet unmatched pairs. 71132 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:97,247,522
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 1362787 as yet unmatched pairs. 68503 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:101,004,255
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 1366619 as yet unmatched pairs. 72323 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:107,872,283
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1358505 as yet unmatched pairs. 64205 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:108,765,958
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 1357819 as yet unmatched pairs. 63517 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,155
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 1356624 as yet unmatched pairs. 62317 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:110,568,031
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 1357289 as yet unmatched pairs. 62982 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:112,659,203
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 1353564 as yet unmatched pairs. 59257 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:127,642,968
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 1351772 as yet unmatched pairs. 57451 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,009
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 1351694 as yet unmatched pairs. 57361 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:152,133,205
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 1346645 as yet unmatched pairs. 52298 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:160,200,042
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 1344089 as yet unmatched pairs. 49739 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:169,633,190
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 1341952 as yet unmatched pairs. 47578 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:174,567,100
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 1339367 as yet unmatched pairs. 44973 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:178,619,629
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 1337048 as yet unmatched pairs. 42646 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:188,985,197
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 1336062 as yet unmatched pairs. 41654 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:189,455,326
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 1331752 as yet unmatched pairs. 37334 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:197,396,207
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 1330025 as yet unmatched pairs. 35597 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:202,034,820
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 1326876 as yet unmatched pairs. 32442 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:206,162,764
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 1324639 as yet unmatched pairs. 30197 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,574
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1324870 as yet unmatched pairs. 30397 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,240
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 1323671 as yet unmatched pairs. 29196 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,185
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 1320493 as yet unmatched pairs. 26017 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:216,141,253
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 1315155 as yet unmatched pairs. 20678 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:217,848,243
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 1312604 as yet unmatched pairs. 18124 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:219,218,442
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 1309881 as yet unmatched pairs. 15393 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:229,008,433
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 1307257 as yet unmatched pairs. 12730 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:231,796,231
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 1305156 as yet unmatched pairs. 10616 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:237,344,744
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 1304350 as yet unmatched pairs. 9797 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:237,527,495
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 1301437 as yet unmatched pairs. 6878 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:240,586,977
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 1296759 as yet unmatched pairs. 2197 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr3:4,675,112
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 1294299 as yet unmatched pairs. 82255 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:9,445,713
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 1291788 as yet unmatched pairs. 79742 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:12,603,376
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 1291677 as yet unmatched pairs. 79625 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:15,256,101
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 1287293 as yet unmatched pairs. 75215 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:27,472,814
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 1284348 as yet unmatched pairs. 72258 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr3:37,072,801
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 1281885 as yet unmatched pairs. 69778 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:40,461,975
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 1280588 as yet unmatched pairs. 68476 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:43,537,800
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 1276950 as yet unmatched pairs. 64837 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr3:47,243,050
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 1274417 as yet unmatched pairs. 62299 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:48,463,868
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 1272136 as yet unmatched pairs. 60018 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:49,124,470
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 1269435 as yet unmatched pairs. 57313 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:50,059,714
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 1266603 as yet unmatched pairs. 54464 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:51,995,426
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 1263952 as yet unmatched pairs. 51788 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:53,181,580
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 1261523 as yet unmatched pairs. 49357 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:58,134,749
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 1259086 as yet unmatched pairs. 46913 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:66,263,367
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 1256238 as yet unmatched pairs. 44035 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:75,739,113
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 1253721 as yet unmatched pairs. 41513 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:99,850,326
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 1253725 as yet unmatched pairs. 41512 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:101,682,428
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 1251252 as yet unmatched pairs. 39037 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:112,630,158
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 1249797 as yet unmatched pairs. 37578 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:114,351,241
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 1245121 as yet unmatched pairs. 32902 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:122,564,524
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 1242465 as yet unmatched pairs. 30238 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:126,026,396
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 1239841 as yet unmatched pairs. 27607 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr3:129,560,364
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 1237237 as yet unmatched pairs. 24988 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:136,001,537
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 1234611 as yet unmatched pairs. 22359 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:142,535,184
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 1232167 as yet unmatched pairs. 19899 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:150,581,723
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 1230063 as yet unmatched pairs. 17790 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:158,697,796
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 1227345 as yet unmatched pairs. 15071 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:172,307,364
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 1225043 as yet unmatched pairs. 12757 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:183,949,813
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 1222321 as yet unmatched pairs. 10029 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:186,048,700
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 1219720 as yet unmatched pairs. 7421 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:188,524,722
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 1221403 as yet unmatched pairs. 9096 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:195,569,011
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 1217950 as yet unmatched pairs. 5636 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:197,700,662
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 1212967 as yet unmatched pairs. 645 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:1,805,374
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 1209897 as yet unmatched pairs. 46507 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:6,291,213
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 1207229 as yet unmatched pairs. 43810 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:13,603,301
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 1204578 as yet unmatched pairs. 41154 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:30,717,041
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 1201884 as yet unmatched pairs. 38454 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:41,014,251
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 1199840 as yet unmatched pairs. 36393 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:54,263,789
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 1197805 as yet unmatched pairs. 34354 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:57,031,325
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 1198221 as yet unmatched pairs. 34766 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:74,933,305
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 1192161 as yet unmatched pairs. 28704 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:78,609,991
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 1190040 as yet unmatched pairs. 26574 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:86,354,574
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 1187547 as yet unmatched pairs. 24073 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:87,494,499
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 1185901 as yet unmatched pairs. 22425 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:99,558,013
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 1182887 as yet unmatched pairs. 19407 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:109,532,713
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 1180870 as yet unmatched pairs. 17387 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr4:119,031,227
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 1178521 as yet unmatched pairs. 15031 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:122,934,510
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 1176094 as yet unmatched pairs. 12602 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:140,659,607
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 1173615 as yet unmatched pairs. 10119 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr4:150,908,757
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 1171923 as yet unmatched pairs. 8427 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:155,362,061
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 1168835 as yet unmatched pairs. 5325 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:169,268,833
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 1166394 as yet unmatched pairs. 2876 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:186,707,480
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 1163882 as yet unmatched pairs. 353 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr5:10,680,766
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 1161474 as yet unmatched pairs. 79905 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:14,479,305
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 1160808 as yet unmatched pairs. 79226 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:32,089,937
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 1155676 as yet unmatched pairs. 74086 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:37,173,933
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 1153433 as yet unmatched pairs. 71813 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:40,976,756
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 1151172 as yet unmatched pairs. 69541 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:55,940,938
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 1149238 as yet unmatched pairs. 67602 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:65,563,357
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 1146458 as yet unmatched pairs. 64814 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:70,070,625
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 1144451 as yet unmatched pairs. 62793 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:72,461,424
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 1142408 as yet unmatched pairs. 60749 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:78,129,149
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 1140362 as yet unmatched pairs. 58687 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:83,521,868
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 1138220 as yet unmatched pairs. 56545 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:95,755,593
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 1136044 as yet unmatched pairs. 54357 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:109,378,204
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 1133508 as yet unmatched pairs. 51813 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:122,152,629
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 1130911 as yet unmatched pairs. 49209 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:132,822,821
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 1129252 as yet unmatched pairs. 47534 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:134,764,033
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 1125905 as yet unmatched pairs. 44186 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr5:138,467,396
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 1124351 as yet unmatched pairs. 42630 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:139,392,515
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 1120963 as yet unmatched pairs. 39237 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:141,201,298
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 1118990 as yet unmatched pairs. 37225 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:141,955,746
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 1116080 as yet unmatched pairs. 34308 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:149,525,154
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 1114147 as yet unmatched pairs. 32361 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,976
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 1112431 as yet unmatched pairs. 30636 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,237
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 1156065 as yet unmatched pairs. 74270 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,120
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 1127893 as yet unmatched pairs. 46098 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,247
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 1115161 as yet unmatched pairs. 33366 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:151,108,534
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 1100673 as yet unmatched pairs. 18878 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:157,566,557
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 1097293 as yet unmatched pairs. 15491 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:170,248,686
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 1095118 as yet unmatched pairs. 13303 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,750
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 1102764 as yet unmatched pairs. 20934 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:176,528,986
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 1090189 as yet unmatched pairs. 8358 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:179,121,681
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 1087707 as yet unmatched pairs. 5870 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,473
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 1085956 as yet unmatched pairs. 4110 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr5:181,242,308
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 1083027 as yet unmatched pairs. 1179 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr6:7,229,791
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 1080582 as yet unmatched pairs. 79429 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr6:11,185,536
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 1077912 as yet unmatched pairs. 76753 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:17,831,138
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 1074590 as yet unmatched pairs. 73420 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:28,153,110
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 1072086 as yet unmatched pairs. 70911 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:30,705,424
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 1070110 as yet unmatched pairs. 68935 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:31,629,141
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 1066858 as yet unmatched pairs. 65681 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,093
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 1065067 as yet unmatched pairs. 63880 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:32,026,302
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 1063809 as yet unmatched pairs. 62622 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:32,069,567
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 1060846 as yet unmatched pairs. 59658 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:32,443,871
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 1057862 as yet unmatched pairs. 56674 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:33,202,966
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 1054485 as yet unmatched pairs. 53285 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:33,686,145
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 1051969 as yet unmatched pairs. 50764 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:36,107,591
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 1049356 as yet unmatched pairs. 48148 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:42,055,556
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 1047441 as yet unmatched pairs. 46224 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:43,605,297
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 1044178 as yet unmatched pairs. 42960 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:52,464,922
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 1041715 as yet unmatched pairs. 40485 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:56,616,942
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 1039767 as yet unmatched pairs. 38528 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:70,526,642
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 1036882 as yet unmatched pairs. 35643 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:78,961,701
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 1034984 as yet unmatched pairs. 33736 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,373
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 1036295 as yet unmatched pairs. 35039 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr6:106,519,150
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 1029757 as yet unmatched pairs. 28500 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:110,982,068
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 1027603 as yet unmatched pairs. 26334 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr6:119,348,478
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 1025817 as yet unmatched pairs. 24543 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:129,616,282
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 1022713 as yet unmatched pairs. 21428 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:131,951,207
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 1019969 as yet unmatched pairs. 18665 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:138,908,746
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 1017609 as yet unmatched pairs. 16298 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:144,748,364
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 1015206 as yet unmatched pairs. 13891 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:151,349,259
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 1012989 as yet unmatched pairs. 11673 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:152,224,553
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 1010211 as yet unmatched pairs. 8870 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:158,028,784
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 1007848 as yet unmatched pairs. 6504 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:160,027,303
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 1005277 as yet unmatched pairs. 3932 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:168,650,692
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 1002862 as yet unmatched pairs. 1497 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr7:2,360,759
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 1000157 as yet unmatched pairs. 76914 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr7:5,527,702
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 999143 as yet unmatched pairs. 75894 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,336
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 1001690 as yet unmatched pairs. 78436 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:12,229,801
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 991757 as yet unmatched pairs. 68498 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,557
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 990919 as yet unmatched pairs. 67651 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:35,635,399
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 986541 as yet unmatched pairs. 63273 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:44,040,877
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 983946 as yet unmatched pairs. 60678 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:44,760,356
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 981558 as yet unmatched pairs. 58285 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:55,160,280
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 979206 as yet unmatched pairs. 55927 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:66,948,585
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 976982 as yet unmatched pairs. 53691 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:73,054,844
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 974834 as yet unmatched pairs. 51532 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:74,060,003
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 973488 as yet unmatched pairs. 50185 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,171
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 970904 as yet unmatched pairs. 47598 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:76,329,860
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 968689 as yet unmatched pairs. 45382 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr7:80,677,556
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 966305 as yet unmatched pairs. 42992 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 59s. Last read position: chr7:92,002,399
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 965386 as yet unmatched pairs. 42060 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:92,295,020
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 961762 as yet unmatched pairs. 38435 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr7:94,430,252
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 959408 as yet unmatched pairs. 36069 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr7:98,956,455
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 956559 as yet unmatched pairs. 33206 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,093,038
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 954338 as yet unmatched pairs. 30984 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,888,330
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 951833 as yet unmatched pairs. 28471 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr7:102,558,482
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 949947 as yet unmatched pairs. 26583 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr7:105,203,711
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 948182 as yet unmatched pairs. 24816 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr7:107,975,730
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 946489 as yet unmatched pairs. 23120 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:122,325,573
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 943363 as yet unmatched pairs. 19988 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:128,591,900
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 941644 as yet unmatched pairs. 18265 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:134,950,504
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 938972 as yet unmatched pairs. 15575 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:138,917,332
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 936331 as yet unmatched pairs. 12934 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:140,794,331
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 934379 as yet unmatched pairs. 10978 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:143,646,799
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 930946 as yet unmatched pairs. 7545 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:149,210,667
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 929432 as yet unmatched pairs. 6024 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr7:152,144,854
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 926700 as yet unmatched pairs. 3289 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:157,409,817
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 924068 as yet unmatched pairs. 649 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr8:12,754,889
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 921518 as yet unmatched pairs. 57364 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr8:19,961,053
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 919845 as yet unmatched pairs. 55681 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:23,443,191
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 916333 as yet unmatched pairs. 52150 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr8:29,099,149
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 914041 as yet unmatched pairs. 49838 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:37,830,782
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 911024 as yet unmatched pairs. 46819 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:38,417,892
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 909979 as yet unmatched pairs. 45774 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:38,827,248
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 911068 as yet unmatched pairs. 46863 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:42,272,081
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 904043 as yet unmatched pairs. 39833 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:51,861,044
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 901473 as yet unmatched pairs. 37259 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:63,186,699
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 898839 as yet unmatched pairs. 34621 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:70,598,174
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 897355 as yet unmatched pairs. 33132 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:86,448,395
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 894342 as yet unmatched pairs. 30108 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr8:97,888,116
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 891964 as yet unmatched pairs. 27726 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,956
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 891367 as yet unmatched pairs. 27114 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:103,040,892
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 887031 as yet unmatched pairs. 22762 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:116,645,048
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 884466 as yet unmatched pairs. 20195 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:120,632,483
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 881803 as yet unmatched pairs. 17532 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,348
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 879249 as yet unmatched pairs. 14967 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:133,191,143
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 876734 as yet unmatched pairs. 12448 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,589,044
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 874330 as yet unmatched pairs. 10034 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,589
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 872579 as yet unmatched pairs. 8283 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,273
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 871453 as yet unmatched pairs. 7157 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:144,262,302
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 866904 as yet unmatched pairs. 2604 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr9:711,064
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 864578 as yet unmatched pairs. 60786 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr9:6,502,647
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 861917 as yet unmatched pairs. 58116 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:14,179,730
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 861675 as yet unmatched pairs. 57874 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:19,379,330
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 858684 as yet unmatched pairs. 54863 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:34,241,963
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 854867 as yet unmatched pairs. 51037 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:35,714,624
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 851951 as yet unmatched pairs. 48121 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:41,906,829
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 849133 as yet unmatched pairs. 45288 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:71,694,541
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 847850 as yet unmatched pairs. 44005 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:83,836,938
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 845269 as yet unmatched pairs. 41420 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:89,325,465
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 843255 as yet unmatched pairs. 39406 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:93,665,782
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 840296 as yet unmatched pairs. 36443 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:101,407,967
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 837988 as yet unmatched pairs. 34124 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:110,370,006
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 835819 as yet unmatched pairs. 31953 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:113,290,911
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 832878 as yet unmatched pairs. 29011 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr9:116,698,206
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 830119 as yet unmatched pairs. 26249 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 2s. Last read position: chr9:121,317,098
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 829335 as yet unmatched pairs. 25465 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:124,858,015
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 825811 as yet unmatched pairs. 21927 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:127,886,698
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 821861 as yet unmatched pairs. 17976 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:128,689,613
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 819533 as yet unmatched pairs. 15645 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:130,854,924
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 817343 as yet unmatched pairs. 13452 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:131,598,200
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 814053 as yet unmatched pairs. 10156 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,454
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 812011 as yet unmatched pairs. 8112 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:136,477,221
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 808773 as yet unmatched pairs. 4874 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:137,242,667
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 806125 as yet unmatched pairs. 2226 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr10:3,781,696
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 804870 as yet unmatched pairs. 60665 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:7,799,811
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 800412 as yet unmatched pairs. 56204 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:13,654,428
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 797503 as yet unmatched pairs. 53289 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:18,616,223
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 795088 as yet unmatched pairs. 50853 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:24,620,265
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 793971 as yet unmatched pairs. 49730 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:30,439,053
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 791068 as yet unmatched pairs. 46825 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:32,284,801
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 789747 as yet unmatched pairs. 45503 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr10:37,149,791
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 787424 as yet unmatched pairs. 43174 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:38,054,578
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 785067 as yet unmatched pairs. 40811 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr10:45,785,530
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 782196 as yet unmatched pairs. 37939 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:48,010,293
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 780345 as yet unmatched pairs. 36088 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:59,268,630
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 777845 as yet unmatched pairs. 33579 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:63,209,104
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 775492 as yet unmatched pairs. 31219 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:70,419,917
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 773357 as yet unmatched pairs. 29073 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:73,800,331
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 771173 as yet unmatched pairs. 26885 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,219
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 770128 as yet unmatched pairs. 25831 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:87,086,286
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 765932 as yet unmatched pairs. 21635 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:92,013,781
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 763994 as yet unmatched pairs. 19687 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:95,684,612
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 761087 as yet unmatched pairs. 16778 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:100,209,703
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 758358 as yet unmatched pairs. 14040 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:102,360,236
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 755973 as yet unmatched pairs. 11655 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr10:110,601,758
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 753353 as yet unmatched pairs. 9035 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr10:116,915,463
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 751605 as yet unmatched pairs. 7281 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:121,480,091
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 749437 as yet unmatched pairs. 5110 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:126,118,169
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 745977 as yet unmatched pairs. 1649 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr11:315,011
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 746497 as yet unmatched pairs. 96268 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:821,996
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 740928 as yet unmatched pairs. 90697 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,866
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 738880 as yet unmatched pairs. 88644 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:4,084,732
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 735324 as yet unmatched pairs. 85078 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:8,683,223
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 733609 as yet unmatched pairs. 83356 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:10,797,731
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 730350 as yet unmatched pairs. 80097 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,438
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 729268 as yet unmatched pairs. 79012 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:26,994,998
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 725570 as yet unmatched pairs. 75309 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:34,146,105
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 722890 as yet unmatched pairs. 72629 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr11:46,307,795
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 720854 as yet unmatched pairs. 70588 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:47,746,104
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 717845 as yet unmatched pairs. 67579 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:57,602,102
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 716258 as yet unmatched pairs. 65991 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:60,922,056
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 713092 as yet unmatched pairs. 62825 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:62,271,044
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 718462 as yet unmatched pairs. 68184 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:62,520,879
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 711934 as yet unmatched pairs. 61656 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,870
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 708009 as yet unmatched pairs. 57726 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,222
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 706089 as yet unmatched pairs. 55806 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,650
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 705179 as yet unmatched pairs. 54896 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:62,647,524
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 699535 as yet unmatched pairs. 49242 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:64,286,558
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 696810 as yet unmatched pairs. 46515 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:65,208,061
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 694045 as yet unmatched pairs. 43749 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,803
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 692817 as yet unmatched pairs. 42509 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr11:66,315,262
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 688340 as yet unmatched pairs. 38025 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:67,483,147
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 685171 as yet unmatched pairs. 34856 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr11:69,667,563
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 682243 as yet unmatched pairs. 31922 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:72,080,880
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 679633 as yet unmatched pairs. 29308 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:75,165,849
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 677525 as yet unmatched pairs. 27200 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:82,849,934
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 674497 as yet unmatched pairs. 24170 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:94,467,863
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 671858 as yet unmatched pairs. 21526 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:102,223,732
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 670942 as yet unmatched pairs. 20610 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:111,908,639
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 667786 as yet unmatched pairs. 17451 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:114,247,319
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 664771 as yet unmatched pairs. 14432 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:114,445,958
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 661923 as yet unmatched pairs. 11577 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:118,499,400
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 659435 as yet unmatched pairs. 9084 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:119,015,574
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 656717 as yet unmatched pairs. 6365 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,626
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 654784 as yet unmatched pairs. 4419 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:129,931,050
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 651578 as yet unmatched pairs. 1202 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr12:885,304
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 649614 as yet unmatched pairs. 90998 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:6,057,068
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 646708 as yet unmatched pairs. 88089 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr12:6,922,093
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 644044 as yet unmatched pairs. 85425 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr12:7,081,005
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 642152 as yet unmatched pairs. 83531 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:8,920,965
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 639070 as yet unmatched pairs. 80443 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:11,839,228
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 641125 as yet unmatched pairs. 82490 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:14,503,818
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 634270 as yet unmatched pairs. 75631 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:25,227,259
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 632044 as yet unmatched pairs. 73399 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:32,679,382
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 629428 as yet unmatched pairs. 70777 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:40,561,042
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 626948 as yet unmatched pairs. 68296 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:47,748,469
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 624550 as yet unmatched pairs. 65897 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:49,050,259
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 622052 as yet unmatched pairs. 63399 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,963,593
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 619641 as yet unmatched pairs. 60988 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,328
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 619151 as yet unmatched pairs. 60490 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,293
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 614751 as yet unmatched pairs. 56079 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:53,382,884
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 611963 as yet unmatched pairs. 53290 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,586
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 610156 as yet unmatched pairs. 51483 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr12:55,828,381
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 607198 as yet unmatched pairs. 48523 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,184,208
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 605545 as yet unmatched pairs. 46867 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,716,748
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 602416 as yet unmatched pairs. 43734 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,158,607
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 600928 as yet unmatched pairs. 42245 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,206,725
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 597485 as yet unmatched pairs. 38801 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:58,872,536
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 594605 as yet unmatched pairs. 35921 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:68,552,948
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 592184 as yet unmatched pairs. 33497 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,647
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 590249 as yet unmatched pairs. 31557 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,400
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 589771 as yet unmatched pairs. 31066 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:92,779,249
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 585360 as yet unmatched pairs. 26654 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:96,944,654
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 582873 as yet unmatched pairs. 24161 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:103,947,318
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 580798 as yet unmatched pairs. 22079 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:109,085,008
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 578064 as yet unmatched pairs. 19330 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:111,470,598
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 575879 as yet unmatched pairs. 17144 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr12:113,266,236
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 573043 as yet unmatched pairs. 14308 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:120,147,147
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 570336 as yet unmatched pairs. 11594 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:121,823,539
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 567561 as yet unmatched pairs. 8819 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:123,630,199
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 565267 as yet unmatched pairs. 6518 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:124,950,781
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 562553 as yet unmatched pairs. 3804 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:132,748,271
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 559935 as yet unmatched pairs. 1181 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr13:20,085,911
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 557291 as yet unmatched pairs. 22337 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:28,389,897
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 554817 as yet unmatched pairs. 19859 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr13:36,872,703
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 552506 as yet unmatched pairs. 17548 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:42,299,387
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 550131 as yet unmatched pairs. 15169 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr13:48,256,184
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 550519 as yet unmatched pairs. 15551 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:73,061,885
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 545344 as yet unmatched pairs. 10370 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:97,357,536
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 543232 as yet unmatched pairs. 8256 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr13:106,567,608
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 540591 as yet unmatched pairs. 5614 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr13:110,914,827
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 537597 as yet unmatched pairs. 2619 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:20,459,713
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 534525 as yet unmatched pairs. 49562 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:22,771,084
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 532378 as yet unmatched pairs. 47414 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:24,138,509
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 529818 as yet unmatched pairs. 44849 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:31,128,723
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 526866 as yet unmatched pairs. 41888 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:37,591,520
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 524163 as yet unmatched pairs. 39182 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:50,188,565
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 521840 as yet unmatched pairs. 36854 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:55,140,305
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 519685 as yet unmatched pairs. 34694 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:61,745,711
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 516877 as yet unmatched pairs. 31885 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr14:67,320,294
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 514531 as yet unmatched pairs. 29539 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:69,768,169
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 513204 as yet unmatched pairs. 28211 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:73,719,459
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 509273 as yet unmatched pairs. 24280 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr14:74,898,378
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 506812 as yet unmatched pairs. 21819 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:76,809,079
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 504160 as yet unmatched pairs. 19167 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:91,181,367
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 501496 as yet unmatched pairs. 16493 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:94,079,483
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 499902 as yet unmatched pairs. 14896 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:99,492,818
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 496741 as yet unmatched pairs. 11720 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:102,085,847
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 495029 as yet unmatched pairs. 10008 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:104,773,007
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 491276 as yet unmatched pairs. 6254 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,784
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 488731 as yet unmatched pairs. 3709 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,808
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 488025 as yet unmatched pairs. 3003 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:25,332,160
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 484124 as yet unmatched pairs. 46610 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:32,447,055
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 482482 as yet unmatched pairs. 44967 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:38,490,564
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 480541 as yet unmatched pairs. 43025 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:41,559,339
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 477812 as yet unmatched pairs. 40289 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:42,451,619
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 475768 as yet unmatched pairs. 38232 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:43,770,294
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 474755 as yet unmatched pairs. 37219 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:48,463,127
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 471012 as yet unmatched pairs. 33474 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:52,279,608
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 468540 as yet unmatched pairs. 30990 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:57,439,273
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 465836 as yet unmatched pairs. 28286 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:62,653,249
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 463435 as yet unmatched pairs. 25864 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr15:64,499,899
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 460995 as yet unmatched pairs. 23422 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr15:66,502,637
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 459229 as yet unmatched pairs. 21656 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:71,898,239
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 456525 as yet unmatched pairs. 18951 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,515
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 454021 as yet unmatched pairs. 16447 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:76,260,719
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 451455 as yet unmatched pairs. 13879 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr15:81,299,517
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 448020 as yet unmatched pairs. 10441 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:85,114,993
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 446246 as yet unmatched pairs. 8664 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:89,665,707
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 443570 as yet unmatched pairs. 5985 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:90,916,165
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 440868 as yet unmatched pairs. 3280 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:101,051,733
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 438390 as yet unmatched pairs. 794 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr16:871,242
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 435168 as yet unmatched pairs. 67398 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:2,079,651
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 432233 as yet unmatched pairs. 64461 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,563
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 430240 as yet unmatched pairs. 62467 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,419
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 429922 as yet unmatched pairs. 62149 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:3,661,992
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 424408 as yet unmatched pairs. 56628 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:5,055,295
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 421461 as yet unmatched pairs. 53681 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:12,061,564
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 419475 as yet unmatched pairs. 51695 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:14,763,801
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 417395 as yet unmatched pairs. 49615 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:15,131,421
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 416127 as yet unmatched pairs. 48347 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:16,327,736
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 414414 as yet unmatched pairs. 46623 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,275
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 413918 as yet unmatched pairs. 46127 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:18,845,495
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 412545 as yet unmatched pairs. 44754 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,560
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 411131 as yet unmatched pairs. 43338 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:21,418,794
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 410307 as yet unmatched pairs. 42514 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,203
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 409120 as yet unmatched pairs. 41327 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:22,432,804
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 407877 as yet unmatched pairs. 40084 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,079
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 408578 as yet unmatched pairs. 40781 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:23,529,821
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 406662 as yet unmatched pairs. 38865 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:28,486,597
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 404504 as yet unmatched pairs. 36703 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:29,383,464
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 402946 as yet unmatched pairs. 35126 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,499
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 403236 as yet unmatched pairs. 35415 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:30,067,523
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 400678 as yet unmatched pairs. 32856 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:30,228,433
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 399010 as yet unmatched pairs. 31188 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:30,733,961
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 397058 as yet unmatched pairs. 29236 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,147
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 396176 as yet unmatched pairs. 28353 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:49,637,630
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 392088 as yet unmatched pairs. 24264 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr16:55,502,848
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 390014 as yet unmatched pairs. 22186 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr16:56,683,164
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 400200 as yet unmatched pairs. 32372 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:66,727,730
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 384003 as yet unmatched pairs. 16172 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr16:68,255,970
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 380470 as yet unmatched pairs. 12638 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:70,538,326
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 378605 as yet unmatched pairs. 10773 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:74,678,913
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 375720 as yet unmatched pairs. 7887 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:84,880,542
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 373548 as yet unmatched pairs. 5711 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:88,737,998
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 370261 as yet unmatched pairs. 2423 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr17:1,091,804
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 367463 as yet unmatched pairs. 111265 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:1,679,194
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 364648 as yet unmatched pairs. 108450 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:3,936,321
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 361728 as yet unmatched pairs. 105529 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:5,282,504
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 359042 as yet unmatched pairs. 102842 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:7,462,038
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 356707 as yet unmatched pairs. 100507 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 127s. Last read position: chr17:7,580,034
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 355539 as yet unmatched pairs. 99339 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr17:8,144,854
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 352590 as yet unmatched pairs. 96387 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 2s. Last read position: chr17:13,002,479
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 349229 as yet unmatched pairs. 93026 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:17,154,343
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 347115 as yet unmatched pairs. 90909 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:18,671,515
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 344232 as yet unmatched pairs. 88026 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:28,554,375
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 342060 as yet unmatched pairs. 85853 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:29,293,964
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 339325 as yet unmatched pairs. 83118 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:31,975,539
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 337487 as yet unmatched pairs. 81280 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:35,836,162
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 334706 as yet unmatched pairs. 78499 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:38,064,293
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 332316 as yet unmatched pairs. 76100 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr17:39,201,105
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 330381 as yet unmatched pairs. 74159 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,321
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 328108 as yet unmatched pairs. 71885 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:40,129,434
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 324419 as yet unmatched pairs. 68196 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 2s. Last read position: chr17:41,583,808
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 322816 as yet unmatched pairs. 66590 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 2s. Last read position: chr17:42,117,402
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 319055 as yet unmatched pairs. 62829 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 2s. Last read position: chr17:42,712,472
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 316274 as yet unmatched pairs. 60048 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:44,320,417
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 313588 as yet unmatched pairs. 57361 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:46,171,824
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 312705 as yet unmatched pairs. 56476 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:47,673,093
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 309772 as yet unmatched pairs. 53542 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,076,652
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 307031 as yet unmatched pairs. 50796 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 319105 as yet unmatched pairs. 62869 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,465
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 307210 as yet unmatched pairs. 50973 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,822
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 304067 as yet unmatched pairs. 47829 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,599
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 304980 as yet unmatched pairs. 48741 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,247
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 295116 as yet unmatched pairs. 38877 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,863,251
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 290724 as yet unmatched pairs. 34485 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:59,112,228
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 287328 as yet unmatched pairs. 31087 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr17:59,946,457
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 284901 as yet unmatched pairs. 28660 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:63,815,629
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 282477 as yet unmatched pairs. 26236 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr17:64,859,793
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 279596 as yet unmatched pairs. 23355 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 2s. Last read position: chr17:68,435,689
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 277777 as yet unmatched pairs. 21536 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:72,849,657
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 275186 as yet unmatched pairs. 18945 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:75,615,239
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 273121 as yet unmatched pairs. 16878 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:76,472,694
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 269573 as yet unmatched pairs. 13330 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:78,835,355
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 267103 as yet unmatched pairs. 10849 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:80,380,795
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 263867 as yet unmatched pairs. 7613 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:81,905,114
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 261133 as yet unmatched pairs. 4871 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:82,201,699
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 257868 as yet unmatched pairs. 1602 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 3s. Last read position: chr18:3,457,460
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 255053 as yet unmatched pairs. 16152 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr18:12,325,418
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 253334 as yet unmatched pairs. 14433 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr18:23,946,081
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 250120 as yet unmatched pairs. 11217 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr18:36,114,280
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 248655 as yet unmatched pairs. 9752 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr18:49,490,880
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 246102 as yet unmatched pairs. 7195 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr18:59,333,182
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 243161 as yet unmatched pairs. 4252 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr18:76,959,698
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 239854 as yet unmatched pairs. 945 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr19:1,010,552
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 237252 as yet unmatched pairs. 99232 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:1,364,560
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 233608 as yet unmatched pairs. 95588 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:2,269,602
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 230609 as yet unmatched pairs. 92585 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:4,013,177
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 227513 as yet unmatched pairs. 89489 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr19:4,690,948
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 225360 as yet unmatched pairs. 87336 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 2s. Last read position: chr19:6,010,154
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 222357 as yet unmatched pairs. 84332 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:6,711,002
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 220369 as yet unmatched pairs. 82344 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:7,871,715
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 216994 as yet unmatched pairs. 78968 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr19:10,108,105
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 214335 as yet unmatched pairs. 76309 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:11,003,381
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 211493 as yet unmatched pairs. 73467 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:12,526,940
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 208925 as yet unmatched pairs. 70899 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:13,149,580
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 205830 as yet unmatched pairs. 67804 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:14,717,654
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 203068 as yet unmatched pairs. 65041 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr19:15,257,105
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 202581 as yet unmatched pairs. 64554 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:16,081,982
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 197504 as yet unmatched pairs. 59477 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:17,567,418
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 194521 as yet unmatched pairs. 56494 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:18,541,814
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 191484 as yet unmatched pairs. 53457 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:19,713,054
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 188355 as yet unmatched pairs. 50328 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:34,450,290
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 185992 as yet unmatched pairs. 47957 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:35,767,308
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 182971 as yet unmatched pairs. 44935 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr19:38,647,819
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 180924 as yet unmatched pairs. 42888 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,834
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 187406 as yet unmatched pairs. 49369 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr19:39,473,222
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 175044 as yet unmatched pairs. 37007 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:40,622,479
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 172773 as yet unmatched pairs. 34736 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:42,088,844
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 169545 as yet unmatched pairs. 31508 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,652
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 166945 as yet unmatched pairs. 28908 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:44,985,299
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 164004 as yet unmatched pairs. 25961 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:45,772,654
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 160817 as yet unmatched pairs. 22774 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:47,680,140
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 157709 as yet unmatched pairs. 19666 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:48,913,135
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 155471 as yet unmatched pairs. 17428 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr19:49,543,104
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 152213 as yet unmatched pairs. 14170 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:51,024,211
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 149190 as yet unmatched pairs. 11147 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:53,874,016
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 147181 as yet unmatched pairs. 9138 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:54,461,689
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 144237 as yet unmatched pairs. 6194 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:56,158,524
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 141401 as yet unmatched pairs. 3358 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:58,261,910
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 139320 as yet unmatched pairs. 1277 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 2s. Last read position: chr20:2,860,752
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 136599 as yet unmatched pairs. 31637 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr20:9,453,436
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 133846 as yet unmatched pairs. 28883 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:20,513,106
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 131696 as yet unmatched pairs. 26732 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr20:32,433,872
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 128648 as yet unmatched pairs. 23683 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 2s. Last read position: chr20:35,475,551
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 126027 as yet unmatched pairs. 21062 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr20:36,951,481
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 124300 as yet unmatched pairs. 19335 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:42,677,875
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 120959 as yet unmatched pairs. 15992 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr20:45,907,722
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 119990 as yet unmatched pairs. 15022 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:49,271,544
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 115941 as yet unmatched pairs. 10973 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:53,255,353
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 113538 as yet unmatched pairs. 8570 records in RAM.
INFO 2026-06-08 09:11:06 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:58,996,765
INFO 2026-06-08 09:11:06 MarkDuplicates Tracking 110531 as yet unmatched pairs. 5558 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:63,520,854
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 107744 as yet unmatched pairs. 2769 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr21:7,769,207
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 104641 as yet unmatched pairs. 20541 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,951
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 103519 as yet unmatched pairs. 19407 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr21:25,881,704
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 102987 as yet unmatched pairs. 18873 records in RAM.
INFO 2026-06-08 09:11:13 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:32,412,870
INFO 2026-06-08 09:11:13 MarkDuplicates Tracking 99552 as yet unmatched pairs. 15438 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr21:33,904,016
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 97169 as yet unmatched pairs. 13055 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr21:38,383,875
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 94469 as yet unmatched pairs. 10355 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:43,416,962
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 92046 as yet unmatched pairs. 7932 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr21:45,531,928
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 88759 as yet unmatched pairs. 4645 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr21:46,124,891
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 87392 as yet unmatched pairs. 3278 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr22:19,178,201
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 83079 as yet unmatched pairs. 38330 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:21,805,863
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 80151 as yet unmatched pairs. 35401 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:24,321,336
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 77400 as yet unmatched pairs. 32649 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:28,797,160
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 78139 as yet unmatched pairs. 33388 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,756
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 72401 as yet unmatched pairs. 27650 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:31,125,876
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 69610 as yet unmatched pairs. 24859 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:36,141,686
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 66864 as yet unmatched pairs. 22113 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:37,486,060
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 63368 as yet unmatched pairs. 18617 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:38,486,145
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 63285 as yet unmatched pairs. 18534 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:40,261,849
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 58161 as yet unmatched pairs. 13410 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:41,436,259
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 55483 as yet unmatched pairs. 10732 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr22:42,888,712
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 53032 as yet unmatched pairs. 8281 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:46,894,694
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 49686 as yet unmatched pairs. 4935 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,576
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 46523 as yet unmatched pairs. 1772 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chrX:3,311,090
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 43624 as yet unmatched pairs. 38137 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:17,726,493
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 40925 as yet unmatched pairs. 35438 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:32,816,558
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 38775 as yet unmatched pairs. 33282 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chrX:41,534,703
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 36231 as yet unmatched pairs. 30738 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrX:47,639,196
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 33737 as yet unmatched pairs. 28240 records in RAM.
INFO 2026-06-08 09:11:57 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chrX:53,084,570
INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 31097 as yet unmatched pairs. 25600 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:53,632,545
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 28682 as yet unmatched pairs. 23185 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:70,287,322
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 26345 as yet unmatched pairs. 20848 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:72,273,247
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 26365 as yet unmatched pairs. 20868 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:77,902,741
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 21513 as yet unmatched pairs. 16016 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:103,586,930
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 19044 as yet unmatched pairs. 13547 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:118,572,339
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 16563 as yet unmatched pairs. 11066 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:130,013,694
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 14841 as yet unmatched pairs. 9344 records in RAM.
INFO 2026-06-08 09:12:10 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:148,662,022
INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 11866 as yet unmatched pairs. 6367 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:154,092,190
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 9253 as yet unmatched pairs. 3754 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:154,439,999
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 6683 as yet unmatched pairs. 1184 records in RAM.
INFO 2026-06-08 09:12:14 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,528
INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 5006 as yet unmatched pairs. 1056 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,020
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 1880 as yet unmatched pairs. 1853 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 634830495 records. 0 pairs never matched.
INFO 2026-06-08 09:13:03 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140776; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:13:03 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:13:08 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:13:08 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:13:33 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:13:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,860
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,302
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1898
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,053
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,842
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1754
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,718
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,174
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 2196
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,269
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,591
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 3745
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,258
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,740
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,391
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1418
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,623
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1483
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,145
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,466
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,046
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,727
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:13:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,779
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder Large duplicate set. size = 1792
INFO 2026-06-08 09:13:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,342
INFO 2026-06-08 09:14:28 OpticalDuplicateFinder Large duplicate set. size = 1675
INFO 2026-06-08 09:14:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,875
INFO 2026-06-08 09:14:28 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:14:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,284
INFO 2026-06-08 09:14:33 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 09:14:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,509
INFO 2026-06-08 09:14:33 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 09:14:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,767
INFO 2026-06-08 09:14:50 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:14:50 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:16:00 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:16:06 MarkDuplicates After generateDuplicateIndexes freeMemory: 203967688; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:16:06 MarkDuplicates Marking 392558387 records as duplicates.
INFO 2026-06-08 09:16:06 MarkDuplicates Found 24416845 optical duplicate clusters.
INFO 2026-06-08 09:16:06 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:16:24 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:26,761,039
INFO 2026-06-08 09:16:42 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:61,861,554
INFO 2026-06-08 09:16:59 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 17s. Last read position: chr1:120,524,085
INFO 2026-06-08 09:17:17 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:10s. Time for last 10,000,000: 17s. Last read position: chr1:155,068,880
INFO 2026-06-08 09:17:34 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 17s. Last read position: chr1:182,388,603
INFO 2026-06-08 09:17:52 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 17s. Last read position: chr1:229,271,313
INFO 2026-06-08 09:18:09 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:18:27 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 17s. Last read position: chr2:68,822,489
INFO 2026-06-08 09:18:44 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:38s. Time for last 10,000,000: 17s. Last read position: chr2:110,568,031
INFO 2026-06-08 09:19:02 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 17s. Last read position: chr2:189,455,326
INFO 2026-06-08 09:19:20 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 17s. Last read position: chr2:229,008,433
INFO 2026-06-08 09:19:38 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 17s. Last read position: chr3:37,072,801
INFO 2026-06-08 09:19:55 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 17s. Last read position: chr3:66,263,367
INFO 2026-06-08 09:20:13 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:06s. Time for last 10,000,000: 17s. Last read position: chr3:142,535,184
INFO 2026-06-08 09:20:31 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:24s. Time for last 10,000,000: 17s. Last read position: chr4:6,291,213
INFO 2026-06-08 09:20:48 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:42s. Time for last 10,000,000: 17s. Last read position: chr4:99,558,013
INFO 2026-06-08 09:21:06 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:00s. Time for last 10,000,000: 17s. Last read position: chr5:14,479,305
INFO 2026-06-08 09:21:24 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 17s. Last read position: chr5:95,755,593
INFO 2026-06-08 09:21:42 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:35s. Time for last 10,000,000: 17s. Last read position: chr5:150,133,976
INFO 2026-06-08 09:21:59 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 17s. Last read position: chr5:179,833,473
INFO 2026-06-08 09:22:16 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 17s. Last read position: chr6:32,069,567
INFO 2026-06-08 09:22:34 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 17s. Last read position: chr6:78,961,701
INFO 2026-06-08 09:22:51 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 17s. Last read position: chr6:152,224,553
INFO 2026-06-08 09:23:09 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:02s. Time for last 10,000,000: 17s. Last read position: chr7:44,040,877
INFO 2026-06-08 09:23:26 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 17s. Last read position: chr7:92,295,020
INFO 2026-06-08 09:23:44 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 17s. Last read position: chr7:134,950,504
INFO 2026-06-08 09:24:02 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:55s. Time for last 10,000,000: 17s. Last read position: chr8:29,099,149
INFO 2026-06-08 09:24:19 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 17s. Last read position: chr8:100,706,956
INFO 2026-06-08 09:24:37 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 17s. Last read position: chr9:711,064
INFO 2026-06-08 09:24:54 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 17s. Last read position: chr9:93,665,782
INFO 2026-06-08 09:25:12 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 17s. Last read position: chr9:131,598,200
INFO 2026-06-08 09:25:29 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 17s. Last read position: chr10:32,284,801
INFO 2026-06-08 09:25:47 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 17s. Last read position: chr10:87,086,286
INFO 2026-06-08 09:26:04 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:58s. Time for last 10,000,000: 17s. Last read position: chr11:821,996
INFO 2026-06-08 09:26:22 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:15s. Time for last 10,000,000: 17s. Last read position: chr11:57,602,102
INFO 2026-06-08 09:26:39 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 17s. Last read position: chr11:65,654,803
INFO 2026-06-08 09:26:57 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:50s. Time for last 10,000,000: 17s. Last read position: chr11:114,247,319
INFO 2026-06-08 09:27:14 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:07s. Time for last 10,000,000: 17s. Last read position: chr12:8,920,965
INFO 2026-06-08 09:27:32 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 17s. Last read position: chr12:52,952,293
INFO 2026-06-08 09:27:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 17s. Last read position: chr12:76,030,647
INFO 2026-06-08 09:28:07 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 17s. Last read position: chr12:123,630,199
INFO 2026-06-08 09:28:25 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 17s. Last read position: chr13:106,567,608
INFO 2026-06-08 09:28:42 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 17s. Last read position: chr14:67,320,294
INFO 2026-06-08 09:29:00 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 17s. Last read position: chr14:105,587,784
INFO 2026-06-08 09:29:17 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 17s. Last read position: chr15:57,439,273
INFO 2026-06-08 09:29:35 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:28s. Time for last 10,000,000: 17s. Last read position: chr15:90,916,165
INFO 2026-06-08 09:29:52 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:46s. Time for last 10,000,000: 17s. Last read position: chr16:15,131,421
INFO 2026-06-08 09:30:10 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 17s. Last read position: chr16:28,486,597
INFO 2026-06-08 09:30:27 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 17s. Last read position: chr16:66,727,730
INFO 2026-06-08 09:30:44 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 17s. Last read position: chr17:7,462,038
INFO 2026-06-08 09:31:02 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:55s. Time for last 10,000,000: 17s. Last read position: chr17:38,064,293
INFO 2026-06-08 09:31:19 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 17s. Last read position: chr17:50,076,652
INFO 2026-06-08 09:31:37 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 17s. Last read position: chr17:64,859,793
INFO 2026-06-08 09:31:54 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 17s. Last read position: chr18:12,325,418
INFO 2026-06-08 09:32:12 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:05s. Time for last 10,000,000: 17s. Last read position: chr19:4,690,948
INFO 2026-06-08 09:32:29 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:22s. Time for last 10,000,000: 17s. Last read position: chr19:16,081,982
INFO 2026-06-08 09:32:46 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:40s. Time for last 10,000,000: 17s. Last read position: chr19:42,088,844
INFO 2026-06-08 09:33:03 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:57s. Time for last 10,000,000: 17s. Last read position: chr19:56,158,524
INFO 2026-06-08 09:33:21 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:14s. Time for last 10,000,000: 17s. Last read position: chr20:49,271,544
INFO 2026-06-08 09:33:38 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:31s. Time for last 10,000,000: 16s. Last read position: chr21:43,416,962
INFO 2026-06-08 09:33:55 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:48s. Time for last 10,000,000: 17s. Last read position: chr22:37,486,060
INFO 2026-06-08 09:34:12 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:06s. Time for last 10,000,000: 17s. Last read position: chrX:41,534,703
INFO 2026-06-08 09:34:30 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:23s. Time for last 10,000,000: 17s. Last read position: chrX:148,662,022
INFO 2026-06-08 09:34:47 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:34:47 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:34:47 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:34:47 MarkDuplicates Before output close freeMemory: 203935488; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:34:47 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:34:47 MarkDuplicates After output close freeMemory: 104175336; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:34:47 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.71 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory