File Info

Filename
aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/0f55d65d70970a51c7e941a8ab0b71/aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:36:30
                             Started mapping on |	Jun 08 07:38:30
                                    Finished on |	Jun 08 08:34:49
       Mapping speed, Million of reads per hour |	314.89

                          Number of input reads |	295559835
                      Average input read length |	254
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283027316
                        Uniquely mapped reads % |	95.76%
                          Average mapped length |	253.81
                       Number of splices: Total |	335005747
            Number of splices: Annotated (sjdb) |	331308792
                       Number of splices: GT/AG |	331769810
                       Number of splices: GC/AG |	2400225
                       Number of splices: AT/AC |	292616
               Number of splices: Non-canonical |	543096
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.52
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7175294
             % of reads mapped to multiple loci |	2.43%
        Number of reads mapped to too many loci |	311737
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	487255
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	2793544
                 % of reads unmapped: too short |	0.95%
                Number of reads unmapped: other |	267153
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3593621
                            % of chimeric reads |	1.22%