File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/07e728669d6479bfab8f941ee186f7/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:18:22Z thread 442 Sample sheet being processed by common lib? Yes
2026-06-08T06:18:22Z thread 442 SampleSheet Settings: 
2026-06-08T06:18:22Z thread 442   FastqCompressionFormat = gzip
2026-06-08T06:18:22Z thread 442   NoLaneSplitting = FALSE
2026-06-08T06:18:22Z thread 442   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:18:22Z thread 442   SoftwareVersion = 4.3.6
2026-06-08T06:18:22Z thread 442 
2026-06-08T06:18:22Z thread 442 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:18:22Z thread 442 shared-thread-linux-native-asio output is disabled
2026-06-08T06:18:22Z thread 442 bcl-convert Version 4.4.6
2026-06-08T06:18:22Z thread 442 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:18:22Z thread 442 Command Line: --tiles s_7 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:18:22Z thread 442 Conversion Begins.
2026-06-08T06:18:22Z thread 442 Input BCL Information:
2026-06-08T06:18:22Z thread 442     Read Structure: 2026-06-08T06:18:22Z thread 442 Y1512026-06-08T06:18:22Z thread 442 ;2026-06-08T06:18:22Z thread 442 I102026-06-08T06:18:22Z thread 442 ;2026-06-08T06:18:22Z thread 442 I102026-06-08T06:18:22Z thread 442 ;2026-06-08T06:18:22Z thread 442 Y1512026-06-08T06:18:22Z thread 442 
2026-06-08T06:18:22Z thread 442     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:18:22Z thread 442     BCL file format: cbcl
2026-06-08T06:18:22Z thread 442     Positions file format: slocs
2026-06-08T06:18:22Z thread 442     Filter file format: filter
2026-06-08T06:18:22Z thread 442 Conversion Information:
2026-06-08T06:18:22Z thread 442     Tile filtering: converting 784/6272 tiles
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 1: 96
2026-06-08T06:18:22Z thread 442     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 2: 96
2026-06-08T06:18:22Z thread 442     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 3: 96
2026-06-08T06:18:22Z thread 442     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 4: 96
2026-06-08T06:18:22Z thread 442     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 5: 96
2026-06-08T06:18:22Z thread 442     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 6: 96
2026-06-08T06:18:22Z thread 442     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 7: 96
2026-06-08T06:18:22Z thread 442     Sample Count for Lane 8: 96
2026-06-08T06:18:22Z thread 442     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:22Z thread 442     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:18:22Z thread 442 # CPU hw threads available: 64
2026-06-08T06:18:22Z thread 442 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:18:22Z thread 442 SW compressors: 64
2026-06-08T06:18:22Z thread 442 SW decompressors: 32
2026-06-08T06:18:22Z thread 442 SW FASTQ compression level: 1
2026-06-08T06:45:58Z thread 442 Lane 7 Post-run Information:
2026-06-08T06:45:58Z thread 442     Total clusters: 4100159606
2026-06-08T06:45:58Z thread 442     Total Genomic Reads: 8200319212
2026-06-08T06:45:58Z thread 442     Total Genomic Input Gigabases 1238.25
2026-06-08T06:45:58Z thread 442     Minimum reads for a sample: 235760
2026-06-08T06:45:58Z thread 442     Maximum reads for a sample: 145295898
2026-06-08T06:45:58Z thread 442     Average reads per sample: 78972378.71
2026-06-08T06:45:58Z thread 442     Undetermined reads: 618970856
2026-06-08T06:45:59Z thread 442 Conversion Complete.