File Info

Filename
aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/a9dcb2751cb968ecf99ffcc4fef571/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:27:20
                             Started mapping on |	Jun 08 07:29:33
                                    Finished on |	Jun 08 07:50:09
       Mapping speed, Million of reads per hour |	323.53

                          Number of input reads |	111078145
                      Average input read length |	223
                                    UNIQUE READS:
                   Uniquely mapped reads number |	104413942
                        Uniquely mapped reads % |	94.00%
                          Average mapped length |	222.95
                       Number of splices: Total |	89203551
            Number of splices: Annotated (sjdb) |	87918452
                       Number of splices: GT/AG |	88309567
                       Number of splices: GC/AG |	583738
                       Number of splices: AT/AC |	86529
               Number of splices: Non-canonical |	223717
                      Mismatch rate per base, % |	0.46%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.51
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4188504
             % of reads mapped to multiple loci |	3.77%
        Number of reads mapped to too many loci |	196464
             % of reads mapped to too many loci |	0.18%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	251372
       % of reads unmapped: too many mismatches |	0.23%
            Number of reads unmapped: too short |	1076452
                 % of reads unmapped: too short |	0.97%
                Number of reads unmapped: other |	167524
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	1523864
                            % of chimeric reads |	1.37%