File Info

Filename
aih-tih-sc-16054b-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/9974715b26386cbe22e03d563a248d/aih-tih-sc-16054b-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:41:27
                             Started mapping on |	Jun 08 07:43:26
                                    Finished on |	Jun 08 08:49:58
       Mapping speed, Million of reads per hour |	266.44

                          Number of input reads |	295455238
                      Average input read length |	257
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282989908
                        Uniquely mapped reads % |	95.78%
                          Average mapped length |	256.55
                       Number of splices: Total |	358830078
            Number of splices: Annotated (sjdb) |	355348434
                       Number of splices: GT/AG |	355976983
                       Number of splices: GC/AG |	1945671
                       Number of splices: AT/AC |	228501
               Number of splices: Non-canonical |	678923
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.51
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6854490
             % of reads mapped to multiple loci |	2.32%
        Number of reads mapped to too many loci |	410700
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	479538
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	2841680
                 % of reads unmapped: too short |	0.96%
                Number of reads unmapped: other |	313852
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3650601
                            % of chimeric reads |	1.24%