Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f2a5e77f53760fed44c03050aade9b/aih-tih-sc-d12f1f-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/9ee2db30924f1f3a059e6e6936ca57/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/9ee2db30924f1f3a059e6e6936ca57/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-d12f1f-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-d12f1f-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-d12f1f-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:03:11.906 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:03:11 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-d12f1f-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-d12f1f-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-d12f1f-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:03:11 GMT 2026] Executing as ?@nf-d79ee2db30924f1f3a059e6e6936ca57-e0ecd-hz245 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:03:11 MarkDuplicates Start of doWork freeMemory: 105493176; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:03:11 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:03:11 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,390,552
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 4193 as yet unmatched pairs. 769 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,815,791
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 11488 as yet unmatched pairs. 5029 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:3,524,992
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 10693 as yet unmatched pairs. 573 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:6,349,761
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 14830 as yet unmatched pairs. 1498 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:7,827,311
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 17159 as yet unmatched pairs. 700 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:9,735,493
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 20987 as yet unmatched pairs. 1661 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:10,654,522
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 23384 as yet unmatched pairs. 1124 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:11,680,371
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 26834 as yet unmatched pairs. 1671 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:15,922,248
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 28512 as yet unmatched pairs. 471 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:16,582,617
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 32736 as yet unmatched pairs. 2187 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:19,146,878
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 34612 as yet unmatched pairs. 999 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 3s. Last read position: chr1:20,810,771
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 37667 as yet unmatched pairs. 1337 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:22,086,671
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 41216 as yet unmatched pairs. 2018 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:23,362,502
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 42403 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:24,839,976
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 46695 as yet unmatched pairs. 2046 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:26,234,250
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 47690 as yet unmatched pairs. 612 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:26,731,454
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 50224 as yet unmatched pairs. 587 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:27,547,746
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 53680 as yet unmatched pairs. 1206 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:28,743,893
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 56025 as yet unmatched pairs. 828 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:31,260,044
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 59077 as yet unmatched pairs. 1086 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:32,228,520
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 63805 as yet unmatched pairs. 2698 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:32,830,004
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 64659 as yet unmatched pairs. 592 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 3s. Last read position: chr1:34,992,294
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 67548 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:35,631,305
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 71082 as yet unmatched pairs. 943 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:37,501,827
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 76148 as yet unmatched pairs. 3212 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:39,857,341
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 76319 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:41,381,962
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 79113 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:43,426,132
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 82169 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:44,632,377
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 85918 as yet unmatched pairs. 935 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:46,031,542
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 87961 as yet unmatched pairs. 392 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:50,974,043
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 91446 as yet unmatched pairs. 1069 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:52,801,862
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 93615 as yet unmatched pairs. 522 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:55,063,473
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 96317 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:61,709,351
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 99332 as yet unmatched pairs. 730 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:64,869,311
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 102755 as yet unmatched pairs. 1414 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:77,044,475
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 104564 as yet unmatched pairs. 602 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:85,252,627
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 106882 as yet unmatched pairs. 483 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:91,720,172
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 109475 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:99,689,613
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 112032 as yet unmatched pairs. 310 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:109,107,038
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 114610 as yet unmatched pairs. 337 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:110,043,837
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 117879 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:112,412,306
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 120617 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:113,968,625
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 123685 as yet unmatched pairs. 833 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:114,723,895
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 129766 as yet unmatched pairs. 4209 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:116,961,438
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 128551 as yet unmatched pairs. 493 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:121,387,695
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 130985 as yet unmatched pairs. 557 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:147,264,548
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 132906 as yet unmatched pairs. 796 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,805
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 157388 as yet unmatched pairs. 22733 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,649
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 137358 as yet unmatched pairs. 810 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,172
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 146799 as yet unmatched pairs. 8990 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:150,622,797
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 141540 as yet unmatched pairs. 904 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:151,315,706
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 143945 as yet unmatched pairs. 598 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:152,305,977
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 148626 as yet unmatched pairs. 2693 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:153,040,072
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 148973 as yet unmatched pairs. 803 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:153,747,312
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 150787 as yet unmatched pairs. 559 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,012
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 155868 as yet unmatched pairs. 2797 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:154,501,441
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 156197 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 3s. Last read position: chr1:155,204,811
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 159234 as yet unmatched pairs. 624 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:155,676,732
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 163725 as yet unmatched pairs. 2605 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,818
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 166049 as yet unmatched pairs. 1925 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:156,727,449
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 167613 as yet unmatched pairs. 289 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:160,292,094
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 171245 as yet unmatched pairs. 945 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:162,566,159
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 173510 as yet unmatched pairs. 404 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:169,830,707
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 176462 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:173,946,547
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 178866 as yet unmatched pairs. 594 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:181,088,880
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 181592 as yet unmatched pairs. 525 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:185,093,100
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 184556 as yet unmatched pairs. 646 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:186,339,642
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 190081 as yet unmatched pairs. 3666 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:193,141,896
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 189474 as yet unmatched pairs. 608 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr1:201,782,850
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 192072 as yet unmatched pairs. 479 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr1:203,307,371
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 195683 as yet unmatched pairs. 1299 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr1:204,433,817
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 197226 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr1:205,723,960
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 205683 as yet unmatched pairs. 5980 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr1:212,047,186
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 203613 as yet unmatched pairs. 1337 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr1:214,646,385
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 206321 as yet unmatched pairs. 1405 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr1:215,759,768
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 209647 as yet unmatched pairs. 2236 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr1:216,070,158
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 218939 as yet unmatched pairs. 8757 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr1:216,246,646
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 217707 as yet unmatched pairs. 4999 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr1:216,422,092
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 230614 as yet unmatched pairs. 15072 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr1:222,665,557
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 218272 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr1:225,419,324
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 223145 as yet unmatched pairs. 2562 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr1:225,838,856
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 223426 as yet unmatched pairs. 423 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr1:226,596,813
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 226391 as yet unmatched pairs. 860 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr1:228,359,709
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 228874 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr1:232,465,289
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 233280 as yet unmatched pairs. 1456 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr1:235,552,018
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 235375 as yet unmatched pairs. 765 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr1:243,505,225
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 239188 as yet unmatched pairs. 1913 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr1:244,856,124
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 242269 as yet unmatched pairs. 2378 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr1:248,816,852
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 242815 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 3s. Last read position: chr2:9,327,894
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 246130 as yet unmatched pairs. 240687 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:15,599,698
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 249487 as yet unmatched pairs. 243956 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:24,707,671
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 252662 as yet unmatched pairs. 247067 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:26,792,794
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 254443 as yet unmatched pairs. 248790 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:28,788,706
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 266573 as yet unmatched pairs. 260877 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,231
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 259845 as yet unmatched pairs. 253845 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 398381 as yet unmatched pairs. 234875 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 1002054 as yet unmatched pairs. 152562 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 1344594 as yet unmatched pairs. 105835 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 1348755 as yet unmatched pairs. 105339 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:37,013,883
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 1431966 as yet unmatched pairs. 93460 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:42,493,136
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 1429488 as yet unmatched pairs. 90934 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:47,161,766
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 1431157 as yet unmatched pairs. 92549 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:50,829,606
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 1425758 as yet unmatched pairs. 87060 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:55,232,766
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 1421381 as yet unmatched pairs. 82594 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:60,461,588
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 1421577 as yet unmatched pairs. 82704 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:63,313,270
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 1416373 as yet unmatched pairs. 77415 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:70,227,697
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 1414755 as yet unmatched pairs. 75710 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:73,850,380
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 1411932 as yet unmatched pairs. 72837 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:85,389,791
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 1408577 as yet unmatched pairs. 69437 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:88,613,826
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 1406544 as yet unmatched pairs. 67360 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:96,301,648
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 1405145 as yet unmatched pairs. 65915 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:97,647,106
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 1402864 as yet unmatched pairs. 63577 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:102,164,868
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 1399597 as yet unmatched pairs. 60256 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:108,762,111
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 1400746 as yet unmatched pairs. 61364 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:109,813,636
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 1396270 as yet unmatched pairs. 56857 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:112,378,004
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 1394852 as yet unmatched pairs. 55417 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:119,960,885
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 1393148 as yet unmatched pairs. 53647 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:131,482,740
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 1390381 as yet unmatched pairs. 50816 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:147,952,401
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 1388655 as yet unmatched pairs. 49021 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:156,549,753
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 1385814 as yet unmatched pairs. 46094 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:165,890,627
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 1383471 as yet unmatched pairs. 43609 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:173,258,696
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 1380609 as yet unmatched pairs. 40680 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr2:177,222,557
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 1378614 as yet unmatched pairs. 38625 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr2:186,501,307
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 1376448 as yet unmatched pairs. 36408 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:196,319,900
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 1373714 as yet unmatched pairs. 33609 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr2:201,760,921
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 1371634 as yet unmatched pairs. 31471 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr2:207,575,318
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 1371798 as yet unmatched pairs. 31559 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,343
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 1368637 as yet unmatched pairs. 28336 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:216,192,651
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 1369639 as yet unmatched pairs. 29308 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:218,666,011
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 1360891 as yet unmatched pairs. 20446 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:221,482,453
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 1359412 as yet unmatched pairs. 18904 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr2:231,458,267
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 1357198 as yet unmatched pairs. 16626 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr2:233,841,552
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 1353253 as yet unmatched pairs. 12642 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr2:238,239,085
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 1357343 as yet unmatched pairs. 16650 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr2:240,717,194
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 1344255 as yet unmatched pairs. 3467 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr2:241,431,680
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 1341555 as yet unmatched pairs. 731 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:12,584,423
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 1339575 as yet unmatched pairs. 63397 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:18,394,786
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 1337641 as yet unmatched pairs. 61397 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:38,198,709
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 1333650 as yet unmatched pairs. 57323 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:46,999,430
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 1330948 as yet unmatched pairs. 54565 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:48,660,396
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 1328709 as yet unmatched pairs. 52272 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:50,105,628
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 1325286 as yet unmatched pairs. 48791 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:52,479,826
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 1322606 as yet unmatched pairs. 46070 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:62,282,738
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 1319700 as yet unmatched pairs. 43097 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:94,050,866
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 1317290 as yet unmatched pairs. 40595 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:101,682,883
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 1316408 as yet unmatched pairs. 39649 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:120,602,207
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 1312144 as yet unmatched pairs. 35282 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:125,233,270
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 1309813 as yet unmatched pairs. 32865 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,461
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 1312138 as yet unmatched pairs. 35127 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:133,649,527
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 1304211 as yet unmatched pairs. 27145 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:141,066,224
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 1301626 as yet unmatched pairs. 24458 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:154,149,401
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 1299008 as yet unmatched pairs. 21782 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:169,483,627
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1296307 as yet unmatched pairs. 19009 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:179,598,751
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 1294472 as yet unmatched pairs. 17056 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:184,181,168
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 1291940 as yet unmatched pairs. 14465 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:186,786,199
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 1290931 as yet unmatched pairs. 13411 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:195,529,851
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 1286427 as yet unmatched pairs. 8826 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:195,771,753
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 1284513 as yet unmatched pairs. 6886 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,658
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 1287106 as yet unmatched pairs. 9471 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,981
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 1282593 as yet unmatched pairs. 4932 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr3:196,716,857
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 1279617 as yet unmatched pairs. 1894 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:1,212,215
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 1276578 as yet unmatched pairs. 49053 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr4:1,805,568
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 1275278 as yet unmatched pairs. 47707 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:2,964,079
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 1270394 as yet unmatched pairs. 42780 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:7,531,565
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 1267413 as yet unmatched pairs. 39715 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:17,647,654
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 1264843 as yet unmatched pairs. 37044 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:39,205,711
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 1262497 as yet unmatched pairs. 34643 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:42,586,350
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 1261460 as yet unmatched pairs. 33550 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr4:55,364,141
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 1257400 as yet unmatched pairs. 29440 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:73,069,431
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 1254644 as yet unmatched pairs. 26605 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:78,407,757
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 1252208 as yet unmatched pairs. 24108 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:84,678,230
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 1249627 as yet unmatched pairs. 21480 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:94,278,644
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 1246863 as yet unmatched pairs. 18663 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr4:105,682,867
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 1244296 as yet unmatched pairs. 16039 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr4:121,681,727
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 1243012 as yet unmatched pairs. 14696 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr4:137,530,712
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 1239347 as yet unmatched pairs. 10979 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr4:145,376,098
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 1236800 as yet unmatched pairs. 8363 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr4:152,888,190
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 1234849 as yet unmatched pairs. 6340 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr4:173,332,984
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 1233847 as yet unmatched pairs. 5255 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:186,621,303
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 1230239 as yet unmatched pairs. 1587 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:1,057,523
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 1226491 as yet unmatched pairs. 85077 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:2,748,936
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 1225523 as yet unmatched pairs. 84060 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:10,263,227
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 1221892 as yet unmatched pairs. 80364 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:14,270,823
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 1221279 as yet unmatched pairs. 79692 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:14,369,501
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 1222442 as yet unmatched pairs. 80822 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:14,471,350
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 1217860 as yet unmatched pairs. 76182 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:14,508,290
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 1212290 as yet unmatched pairs. 70586 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:32,097,351
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 1206049 as yet unmatched pairs. 64274 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:36,985,307
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 1206230 as yet unmatched pairs. 64393 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:38,950,470
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 1202140 as yet unmatched pairs. 60265 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr5:43,609,157
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 1199275 as yet unmatched pairs. 57345 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:62,363,847
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 1196880 as yet unmatched pairs. 54897 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:70,094,649
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 1193825 as yet unmatched pairs. 51802 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:72,968,550
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 1192309 as yet unmatched pairs. 50234 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:80,725,465
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 1189667 as yet unmatched pairs. 47541 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:96,757,616
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 1187152 as yet unmatched pairs. 44951 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:113,101,835
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 1184824 as yet unmatched pairs. 42515 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:127,396,738
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 1182264 as yet unmatched pairs. 39850 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:132,934,618
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 1180071 as yet unmatched pairs. 37593 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:137,498,408
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 1177251 as yet unmatched pairs. 34703 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr5:139,317,617
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 1175792 as yet unmatched pairs. 33200 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:140,834,646
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 1171809 as yet unmatched pairs. 29131 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:141,210,858
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 1169805 as yet unmatched pairs. 27113 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:141,937,306
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 1166704 as yet unmatched pairs. 23970 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:149,520,341
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 1166983 as yet unmatched pairs. 24184 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:151,554,473
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 1161052 as yet unmatched pairs. 18229 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:160,394,433
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 1158539 as yet unmatched pairs. 15597 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,758
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 1174516 as yet unmatched pairs. 31533 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:175,965,096
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 1154125 as yet unmatched pairs. 11088 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr5:177,310,677
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 1150894 as yet unmatched pairs. 7805 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:179,616,893
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 1155532 as yet unmatched pairs. 12395 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:179,871,513
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 1145267 as yet unmatched pairs. 2094 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:3,153,867
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 1142555 as yet unmatched pairs. 110052 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:4,115,949
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 1140344 as yet unmatched pairs. 107810 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:7,584,294
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 1137643 as yet unmatched pairs. 105056 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:17,647,840
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 1135504 as yet unmatched pairs. 102863 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:20,846,154
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 1140577 as yet unmatched pairs. 107867 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:26,021,945
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 1129266 as yet unmatched pairs. 96416 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:26,056,201
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 1131327 as yet unmatched pairs. 98451 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,656
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 1130118 as yet unmatched pairs. 97218 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:26,198,845
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 1120800 as yet unmatched pairs. 87861 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:26,225,375
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 1120873 as yet unmatched pairs. 87896 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:26,459,607
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 1114454 as yet unmatched pairs. 81432 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:27,451,438
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 1111756 as yet unmatched pairs. 78683 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:27,814,525
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 1117825 as yet unmatched pairs. 84733 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:27,865,620
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 1106219 as yet unmatched pairs. 73110 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:27,893,621
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 1105350 as yet unmatched pairs. 72204 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:30,659,555
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 1100894 as yet unmatched pairs. 67718 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,144,704
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 1098085 as yet unmatched pairs. 64864 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:31,634,851
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 1096120 as yet unmatched pairs. 62857 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,927
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 1092138 as yet unmatched pairs. 58860 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:32,853,078
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 1090037 as yet unmatched pairs. 56706 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:33,403,332
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 1088064 as yet unmatched pairs. 54704 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:34,293,450
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 1084892 as yet unmatched pairs. 51485 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:36,130,666
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 1081170 as yet unmatched pairs. 47701 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr6:41,067,373
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 1078606 as yet unmatched pairs. 45081 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:43,129,084
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 1077096 as yet unmatched pairs. 43539 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:44,229,614
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 1072731 as yet unmatched pairs. 39133 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr6:56,459,122
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 1071389 as yet unmatched pairs. 37584 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr6:71,288,981
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 1067539 as yet unmatched pairs. 33682 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:81,749,620
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 1065392 as yet unmatched pairs. 31477 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:88,145,057
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 1063306 as yet unmatched pairs. 29350 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr6:99,410,837
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 1061312 as yet unmatched pairs. 27303 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr6:110,108,559
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 1058026 as yet unmatched pairs. 23959 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:116,436,856
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 1054480 as yet unmatched pairs. 20364 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr6:128,005,202
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 1053241 as yet unmatched pairs. 19007 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr6:136,278,631
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 1049830 as yet unmatched pairs. 15541 records in RAM.
INFO 2026-06-08 09:11:35 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 61s. Last read position: chr6:149,505,652
INFO 2026-06-08 09:11:35 MarkDuplicates Tracking 1047018 as yet unmatched pairs. 12650 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr6:156,829,352
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 1044744 as yet unmatched pairs. 10328 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr6:158,776,407
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 1048732 as yet unmatched pairs. 14261 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr6:161,070,835
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 1038683 as yet unmatched pairs. 4176 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr6:169,717,871
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 1038049 as yet unmatched pairs. 3496 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:1,479,529
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 1032843 as yet unmatched pairs. 72826 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:5,300,625
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 1029817 as yet unmatched pairs. 69732 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,316
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 1039494 as yet unmatched pairs. 79375 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:6,462,995
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 1023415 as yet unmatched pairs. 63272 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr7:21,901,136
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 1020822 as yet unmatched pairs. 60628 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:27,147,595
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 1017845 as yet unmatched pairs. 57628 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr7:40,001,941
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 1015328 as yet unmatched pairs. 54997 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,777
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 1017003 as yet unmatched pairs. 56631 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:66,152,221
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 1010093 as yet unmatched pairs. 49642 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:72,943,295
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 1007513 as yet unmatched pairs. 46995 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:73,683,610
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 1005984 as yet unmatched pairs. 45448 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr7:74,809,884
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 1003882 as yet unmatched pairs. 43321 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr7:75,586,765
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 1002839 as yet unmatched pairs. 42254 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr7:82,005,765
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 999721 as yet unmatched pairs. 39088 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:92,045,014
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 997638 as yet unmatched pairs. 36968 records in RAM.
INFO 2026-06-08 09:12:09 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:96,709,728
INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 994314 as yet unmatched pairs. 33588 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:99,909,580
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 991774 as yet unmatched pairs. 31010 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr7:100,577,487
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 988774 as yet unmatched pairs. 27969 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr7:102,476,222
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 986105 as yet unmatched pairs. 25270 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:105,110,286
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 985584 as yet unmatched pairs. 24717 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:116,904,279
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 982450 as yet unmatched pairs. 21541 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr7:128,084,723
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 981772 as yet unmatched pairs. 20802 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:131,511,080
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 977651 as yet unmatched pairs. 16640 records in RAM.
INFO 2026-06-08 09:12:23 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:137,928,157
INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 978009 as yet unmatched pairs. 16951 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr7:139,573,056
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 972156 as yet unmatched pairs. 11071 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr7:143,292,428
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 969234 as yet unmatched pairs. 8111 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:151,052,565
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 966215 as yet unmatched pairs. 5037 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr7:152,248,318
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 964405 as yet unmatched pairs. 3205 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:7,295,028
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 960887 as yet unmatched pairs. 50004 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr8:18,025,618
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 959272 as yet unmatched pairs. 48347 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:22,614,458
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 956941 as yet unmatched pairs. 45962 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:25,460,281
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 953283 as yet unmatched pairs. 42278 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:32,742,694
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 950488 as yet unmatched pairs. 39413 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:38,331,456
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 950933 as yet unmatched pairs. 39827 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:42,316,316
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 944940 as yet unmatched pairs. 33819 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:47,927,326
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 943268 as yet unmatched pairs. 32118 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:60,517,138
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 939868 as yet unmatched pairs. 28667 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:63,186,747
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 937814 as yet unmatched pairs. 26572 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:73,978,847
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 935040 as yet unmatched pairs. 23727 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr8:93,733,550
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 932705 as yet unmatched pairs. 21332 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:100,151,361
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 930341 as yet unmatched pairs. 18935 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr8:102,828,604
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 927016 as yet unmatched pairs. 15580 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr8:120,432,067
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 924249 as yet unmatched pairs. 12739 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr8:132,811,091
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 922138 as yet unmatched pairs. 10562 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:142,658,716
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 918533 as yet unmatched pairs. 6895 records in RAM.
INFO 2026-06-08 09:13:00 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,202
INFO 2026-06-08 09:13:00 MarkDuplicates Tracking 916111 as yet unmatched pairs. 4458 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:144,521,223
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 912614 as yet unmatched pairs. 918 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:8,449,779
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 913831 as yet unmatched pairs. 68497 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr9:14,150,147
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 912561 as yet unmatched pairs. 67178 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr9:19,378,459
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 907625 as yet unmatched pairs. 62194 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:33,267,886
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 902563 as yet unmatched pairs. 57095 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:35,608,001
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 899217 as yet unmatched pairs. 53687 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:38,411,474
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 898641 as yet unmatched pairs. 53075 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr9:77,321,605
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 894477 as yet unmatched pairs. 48864 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:86,346,335
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 891787 as yet unmatched pairs. 46131 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:93,452,360
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 889775 as yet unmatched pairs. 44080 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr9:98,299,252
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 885995 as yet unmatched pairs. 40234 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:106,926,769
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 884026 as yet unmatched pairs. 38204 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr9:111,653,143
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 880570 as yet unmatched pairs. 34703 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr9:120,518,477
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 877851 as yet unmatched pairs. 31917 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:123,136,157
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 875187 as yet unmatched pairs. 29211 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:127,682,462
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 873499 as yet unmatched pairs. 27469 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr9:128,626,649
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 869766 as yet unmatched pairs. 23716 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:130,172,680
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 866846 as yet unmatched pairs. 20774 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:131,464,882
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 864520 as yet unmatched pairs. 18427 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr9:133,019,465
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 860938 as yet unmatched pairs. 14813 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,467
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 858689 as yet unmatched pairs. 12540 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr9:136,285,404
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 854279 as yet unmatched pairs. 8093 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:136,808,178
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 851821 as yet unmatched pairs. 5602 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr9:137,243,505
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 848462 as yet unmatched pairs. 2203 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr10:3,781,694
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 844920 as yet unmatched pairs. 58861 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:13,660,541
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 842256 as yet unmatched pairs. 56146 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:24,620,122
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 840197 as yet unmatched pairs. 54033 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:29,554,782
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 837544 as yet unmatched pairs. 51335 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:32,034,791
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 844876 as yet unmatched pairs. 58632 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:35,062,969
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 832545 as yet unmatched pairs. 46272 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:46,013,558
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 831429 as yet unmatched pairs. 45118 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr10:58,388,213
INFO 2026-06-08 09:13:56 MarkDuplicates Tracking 827828 as yet unmatched pairs. 41477 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:68,493,496
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 825270 as yet unmatched pairs. 38873 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:70,883,770
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 822536 as yet unmatched pairs. 36114 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:73,766,421
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 820245 as yet unmatched pairs. 33784 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,666
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 821388 as yet unmatched pairs. 34856 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr10:86,668,768
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 815076 as yet unmatched pairs. 28491 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr10:92,024,899
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 812403 as yet unmatched pairs. 25782 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr10:97,004,083
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 809926 as yet unmatched pairs. 23258 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:101,006,741
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 806604 as yet unmatched pairs. 19899 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr10:103,101,287
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 804338 as yet unmatched pairs. 17585 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr10:110,881,460
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 801417 as yet unmatched pairs. 14611 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr10:116,915,389
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 802509 as yet unmatched pairs. 15678 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr10:119,036,154
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 796345 as yet unmatched pairs. 9465 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr10:121,593,731
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 797063 as yet unmatched pairs. 10147 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr10:128,103,413
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 791587 as yet unmatched pairs. 4634 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr10:132,780,883
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 787666 as yet unmatched pairs. 671 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr11:2,945,599
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 784315 as yet unmatched pairs. 81551 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:9,576,247
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 781608 as yet unmatched pairs. 78813 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:18,402,889
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 779349 as yet unmatched pairs. 76514 records in RAM.
INFO 2026-06-08 09:14:28 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:32,927,177
INFO 2026-06-08 09:14:28 MarkDuplicates Tracking 776884 as yet unmatched pairs. 74007 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:34,097,207
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 777431 as yet unmatched pairs. 74535 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:45,286,035
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 772167 as yet unmatched pairs. 69236 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:46,542,505
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 768300 as yet unmatched pairs. 65354 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:47,282,475
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 765594 as yet unmatched pairs. 62630 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:57,236,760
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 762390 as yet unmatched pairs. 59398 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:60,902,424
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 760913 as yet unmatched pairs. 57895 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:61,857,493
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 757572 as yet unmatched pairs. 54537 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:62,627,115
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 754969 as yet unmatched pairs. 51909 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr11:63,912,308
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 751682 as yet unmatched pairs. 48609 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:64,778,351
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 749274 as yet unmatched pairs. 46175 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:65,573,457
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 745351 as yet unmatched pairs. 42124 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:66,068,256
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 741971 as yet unmatched pairs. 38727 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:66,699,593
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 739658 as yet unmatched pairs. 36380 records in RAM.
INFO 2026-06-08 09:14:52 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:68,171,015
INFO 2026-06-08 09:14:52 MarkDuplicates Tracking 735667 as yet unmatched pairs. 32359 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:72,013,114
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 733005 as yet unmatched pairs. 29637 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:73,718,709
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 731100 as yet unmatched pairs. 27702 records in RAM.
INFO 2026-06-08 09:14:57 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:77,201,493
INFO 2026-06-08 09:14:57 MarkDuplicates Tracking 726776 as yet unmatched pairs. 23359 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:85,711,195
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 724314 as yet unmatched pairs. 20856 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:94,970,068
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 721647 as yet unmatched pairs. 18148 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:108,511,122
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 718892 as yet unmatched pairs. 15363 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:115,831,674
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 716197 as yet unmatched pairs. 12620 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:118,498,466
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 713921 as yet unmatched pairs. 10300 records in RAM.
INFO 2026-06-08 09:15:07 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:119,310,775
INFO 2026-06-08 09:15:07 MarkDuplicates Tracking 710847 as yet unmatched pairs. 7204 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:123,061,205
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 709107 as yet unmatched pairs. 5436 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr11:130,239,853
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 706004 as yet unmatched pairs. 2298 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr12:859,384
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 702941 as yet unmatched pairs. 87720 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:6,225,408
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 700061 as yet unmatched pairs. 84810 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:6,600,220
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 697956 as yet unmatched pairs. 82687 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:6,944,595
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 698531 as yet unmatched pairs. 83246 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:12,244,395
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 692744 as yet unmatched pairs. 77416 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:23,781,666
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 689116 as yet unmatched pairs. 73754 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:39,366,442
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 687642 as yet unmatched pairs. 72254 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:46,362,517
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 686592 as yet unmatched pairs. 71167 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:49,038,800
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 681809 as yet unmatched pairs. 66364 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,649
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 687035 as yet unmatched pairs. 71584 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:49,186,356
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 682356 as yet unmatched pairs. 66897 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:50,086,264
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 675288 as yet unmatched pairs. 59823 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:52,469,218
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 673995 as yet unmatched pairs. 58516 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,907
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 669395 as yet unmatched pairs. 53896 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr12:53,471,689
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 669976 as yet unmatched pairs. 54451 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,945
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 666716 as yet unmatched pairs. 51153 records in RAM.
INFO 2026-06-08 09:15:40 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,683
INFO 2026-06-08 09:15:40 MarkDuplicates Tracking 662732 as yet unmatched pairs. 47156 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:56,643,887
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 660272 as yet unmatched pairs. 44664 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,268,328
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 656859 as yet unmatched pairs. 41236 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:63,844,732
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 654529 as yet unmatched pairs. 38877 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:68,553,493
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 650832 as yet unmatched pairs. 35147 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:71,884,939
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 649347 as yet unmatched pairs. 33628 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:93,641,187
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 646158 as yet unmatched pairs. 30398 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:100,624,424
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 643618 as yet unmatched pairs. 27836 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:108,543,134
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 642017 as yet unmatched pairs. 26212 records in RAM.
INFO 2026-06-08 09:15:54 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:111,709,529
INFO 2026-06-08 09:15:54 MarkDuplicates Tracking 638176 as yet unmatched pairs. 22353 records in RAM.
INFO 2026-06-08 09:15:56 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:112,477,698
INFO 2026-06-08 09:15:56 MarkDuplicates Tracking 636212 as yet unmatched pairs. 20366 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:118,144,604
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 632865 as yet unmatched pairs. 16999 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:121,327,165
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 629802 as yet unmatched pairs. 13903 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:122,859,495
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 627123 as yet unmatched pairs. 11215 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr12:123,937,713
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 624109 as yet unmatched pairs. 8185 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:130,442,456
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 622024 as yet unmatched pairs. 6068 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:132,657,872
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 618496 as yet unmatched pairs. 2514 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:20,036,768
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 616944 as yet unmatched pairs. 21350 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:30,463,322
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 614739 as yet unmatched pairs. 19127 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr13:44,575,637
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 610240 as yet unmatched pairs. 14606 records in RAM.
INFO 2026-06-08 09:16:13 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr13:71,538,803
INFO 2026-06-08 09:16:13 MarkDuplicates Tracking 608163 as yet unmatched pairs. 12505 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr13:78,601,795
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 605441 as yet unmatched pairs. 9747 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr13:102,663,648
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 602393 as yet unmatched pairs. 6653 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr13:111,277,617
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 604636 as yet unmatched pairs. 8876 records in RAM.
INFO 2026-06-08 09:16:20 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr13:114,262,909
INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 596527 as yet unmatched pairs. 732 records in RAM.
INFO 2026-06-08 09:16:22 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr14:21,369,705
INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 594477 as yet unmatched pairs. 51835 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr14:23,059,387
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 590899 as yet unmatched pairs. 48243 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:24,184,716
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 587647 as yet unmatched pairs. 44982 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr14:32,091,100
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 587744 as yet unmatched pairs. 45056 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:39,176,078
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 583584 as yet unmatched pairs. 40882 records in RAM.
INFO 2026-06-08 09:16:31 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:50,738,163
INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 580040 as yet unmatched pairs. 37267 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:55,678,409
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 577576 as yet unmatched pairs. 34771 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:61,738,231
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 575084 as yet unmatched pairs. 32250 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:64,225,441
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 572214 as yet unmatched pairs. 29366 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,070
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 569487 as yet unmatched pairs. 26618 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:73,739,592
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 566983 as yet unmatched pairs. 24101 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:77,026,063
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 564211 as yet unmatched pairs. 21308 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:90,288,351
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 561388 as yet unmatched pairs. 18445 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:92,931,610
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 558532 as yet unmatched pairs. 15575 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:99,517,149
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 555802 as yet unmatched pairs. 12829 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr14:102,082,188
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 553431 as yet unmatched pairs. 10436 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:103,522,356
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 550524 as yet unmatched pairs. 7518 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:104,945,519
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 546363 as yet unmatched pairs. 3338 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr15:22,542,542
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 543390 as yet unmatched pairs. 50735 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:29,730,798
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 543388 as yet unmatched pairs. 50710 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr15:34,387,799
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 538209 as yet unmatched pairs. 45515 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:40,621,657
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 535845 as yet unmatched pairs. 43137 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:41,740,036
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 534530 as yet unmatched pairs. 41807 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:43,215,936
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 530430 as yet unmatched pairs. 37693 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:44,338,289
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 528790 as yet unmatched pairs. 36044 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:49,794,525
INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 525277 as yet unmatched pairs. 32502 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr15:52,613,786
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 523169 as yet unmatched pairs. 30360 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:57,243,507
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 522630 as yet unmatched pairs. 29789 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:62,673,709
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 517788 as yet unmatched pairs. 24913 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:65,562,854
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 515396 as yet unmatched pairs. 22500 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:69,255,902
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 512919 as yet unmatched pairs. 19981 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr15:73,260,291
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 510101 as yet unmatched pairs. 17150 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:75,356,624
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 506535 as yet unmatched pairs. 13565 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr15:78,601,900
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 504162 as yet unmatched pairs. 11172 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:84,512,744
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 501126 as yet unmatched pairs. 8121 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:88,905,818
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 499751 as yet unmatched pairs. 6730 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr15:90,981,841
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 496378 as yet unmatched pairs. 3342 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr16:54,020
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 493333 as yet unmatched pairs. 85270 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:1,202,318
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 489458 as yet unmatched pairs. 81385 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:2,020,239
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 486157 as yet unmatched pairs. 78071 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,240,117
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 482985 as yet unmatched pairs. 74883 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,225
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 480257 as yet unmatched pairs. 72149 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:3,021,876
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 476803 as yet unmatched pairs. 68682 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:4,687,729
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 473690 as yet unmatched pairs. 65559 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:11,768,315
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 471441 as yet unmatched pairs. 63276 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:14,924,079
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 468959 as yet unmatched pairs. 60788 records in RAM.
INFO 2026-06-08 09:17:41 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:16,232,824
INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 467210 as yet unmatched pairs. 59031 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:16,393,680
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 466784 as yet unmatched pairs. 58598 records in RAM.
INFO 2026-06-08 09:17:43 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:18,395,885
INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 466036 as yet unmatched pairs. 57842 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:21,125,358
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 462584 as yet unmatched pairs. 54373 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:21,957,531
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 462405 as yet unmatched pairs. 54187 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:23,687,564
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 460136 as yet unmatched pairs. 51905 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:28,735,083
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 457635 as yet unmatched pairs. 49398 records in RAM.
INFO 2026-06-08 09:17:50 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:29,545,376
INFO 2026-06-08 09:17:50 MarkDuplicates Tracking 456288 as yet unmatched pairs. 48048 records in RAM.
INFO 2026-06-08 09:17:52 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,095,277
INFO 2026-06-08 09:17:52 MarkDuplicates Tracking 453096 as yet unmatched pairs. 44842 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:30,724,045
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 450938 as yet unmatched pairs. 42674 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:31,182,628
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 457049 as yet unmatched pairs. 48767 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,095
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 445987 as yet unmatched pairs. 37704 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:49,525,452
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 442504 as yet unmatched pairs. 34203 records in RAM.
INFO 2026-06-08 09:18:01 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:56,389,306
INFO 2026-06-08 09:18:01 MarkDuplicates Tracking 439643 as yet unmatched pairs. 31330 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:58,534,267
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 437404 as yet unmatched pairs. 29083 records in RAM.
INFO 2026-06-08 09:18:04 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:67,435,679
INFO 2026-06-08 09:18:04 MarkDuplicates Tracking 433973 as yet unmatched pairs. 25627 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:68,315,901
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 430713 as yet unmatched pairs. 22362 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:70,156,595
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 428592 as yet unmatched pairs. 20217 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:71,861,819
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 425719 as yet unmatched pairs. 17332 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:75,627,875
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 423330 as yet unmatched pairs. 14929 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr16:84,178,974
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 419713 as yet unmatched pairs. 11264 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:85,668,177
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 418235 as yet unmatched pairs. 9759 records in RAM.
INFO 2026-06-08 09:18:16 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr16:88,879,367
INFO 2026-06-08 09:18:16 MarkDuplicates Tracking 413901 as yet unmatched pairs. 5416 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr16:89,783,090
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 411078 as yet unmatched pairs. 2568 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,402
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 416645 as yet unmatched pairs. 124566 records in RAM.
INFO 2026-06-08 09:18:22 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:1,423,577
INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 404464 as yet unmatched pairs. 112369 records in RAM.
INFO 2026-06-08 09:18:24 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:2,036,609
INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 401482 as yet unmatched pairs. 109380 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:4,674,657
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 398379 as yet unmatched pairs. 106268 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:6,445,358
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 395706 as yet unmatched pairs. 103585 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr17:7,466,521
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 392498 as yet unmatched pairs. 100375 records in RAM.
INFO 2026-06-08 09:18:31 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:7,846,902
INFO 2026-06-08 09:18:31 MarkDuplicates Tracking 390187 as yet unmatched pairs. 98049 records in RAM.
INFO 2026-06-08 09:19:33 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 61s. Last read position: chr17:13,003,526
INFO 2026-06-08 09:19:33 MarkDuplicates Tracking 387679 as yet unmatched pairs. 95535 records in RAM.
INFO 2026-06-08 09:20:46 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 73s. Last read position: chr17:17,126,817
INFO 2026-06-08 09:20:46 MarkDuplicates Tracking 385863 as yet unmatched pairs. 93705 records in RAM.
INFO 2026-06-08 09:20:48 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:18,024,633
INFO 2026-06-08 09:20:48 MarkDuplicates Tracking 382437 as yet unmatched pairs. 90270 records in RAM.
INFO 2026-06-08 09:20:49 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:18,150,428
INFO 2026-06-08 09:20:49 MarkDuplicates Tracking 379912 as yet unmatched pairs. 87736 records in RAM.
INFO 2026-06-08 09:20:51 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:18,580,582
INFO 2026-06-08 09:20:51 MarkDuplicates Tracking 375238 as yet unmatched pairs. 83047 records in RAM.
INFO 2026-06-08 09:20:53 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:27,592,569
INFO 2026-06-08 09:20:53 MarkDuplicates Tracking 373128 as yet unmatched pairs. 80922 records in RAM.
INFO 2026-06-08 09:20:54 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:28,724,845
INFO 2026-06-08 09:20:54 MarkDuplicates Tracking 370114 as yet unmatched pairs. 77892 records in RAM.
INFO 2026-06-08 09:20:56 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:29,608,874
INFO 2026-06-08 09:20:56 MarkDuplicates Tracking 367107 as yet unmatched pairs. 74870 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:31,973,158
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 370342 as yet unmatched pairs. 78074 records in RAM.
INFO 2026-06-08 09:21:00 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:35,809,507
INFO 2026-06-08 09:21:00 MarkDuplicates Tracking 365345 as yet unmatched pairs. 73067 records in RAM.
INFO 2026-06-08 09:21:01 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:37,423,584
INFO 2026-06-08 09:21:01 MarkDuplicates Tracking 360047 as yet unmatched pairs. 67760 records in RAM.
INFO 2026-06-08 09:21:03 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,113
INFO 2026-06-08 09:21:03 MarkDuplicates Tracking 361563 as yet unmatched pairs. 69272 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:40,129,570
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 355851 as yet unmatched pairs. 63553 records in RAM.
INFO 2026-06-08 09:21:06 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:40,637,546
INFO 2026-06-08 09:21:06 MarkDuplicates Tracking 352518 as yet unmatched pairs. 60217 records in RAM.
INFO 2026-06-08 09:21:08 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:41,619,606
INFO 2026-06-08 09:21:08 MarkDuplicates Tracking 350628 as yet unmatched pairs. 58318 records in RAM.
INFO 2026-06-08 09:21:09 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:42,128,648
INFO 2026-06-08 09:21:09 MarkDuplicates Tracking 346333 as yet unmatched pairs. 54008 records in RAM.
INFO 2026-06-08 09:21:11 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:44,084,655
INFO 2026-06-08 09:21:11 MarkDuplicates Tracking 343229 as yet unmatched pairs. 50896 records in RAM.
INFO 2026-06-08 09:21:13 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:45,453,555
INFO 2026-06-08 09:21:13 MarkDuplicates Tracking 340138 as yet unmatched pairs. 47791 records in RAM.
INFO 2026-06-08 09:21:15 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:46,331,516
INFO 2026-06-08 09:21:15 MarkDuplicates Tracking 338455 as yet unmatched pairs. 46107 records in RAM.
INFO 2026-06-08 09:21:16 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:47,677,077
INFO 2026-06-08 09:21:16 MarkDuplicates Tracking 338800 as yet unmatched pairs. 46439 records in RAM.
INFO 2026-06-08 09:21:18 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,970
INFO 2026-06-08 09:21:18 MarkDuplicates Tracking 335731 as yet unmatched pairs. 43353 records in RAM.
INFO 2026-06-08 09:21:20 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr17:51,041,630
INFO 2026-06-08 09:21:20 MarkDuplicates Tracking 331017 as yet unmatched pairs. 38628 records in RAM.
INFO 2026-06-08 09:21:22 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:58,508,793
INFO 2026-06-08 09:21:22 MarkDuplicates Tracking 328223 as yet unmatched pairs. 35811 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,338
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 328085 as yet unmatched pairs. 35656 records in RAM.
INFO 2026-06-08 09:21:25 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:62,559,955
INFO 2026-06-08 09:21:25 MarkDuplicates Tracking 323346 as yet unmatched pairs. 30897 records in RAM.
INFO 2026-06-08 09:21:27 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:63,806,629
INFO 2026-06-08 09:21:27 MarkDuplicates Tracking 320588 as yet unmatched pairs. 28116 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:67,190,308
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 317603 as yet unmatched pairs. 25126 records in RAM.
INFO 2026-06-08 09:21:30 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:68,933,190
INFO 2026-06-08 09:21:30 MarkDuplicates Tracking 314510 as yet unmatched pairs. 22019 records in RAM.
INFO 2026-06-08 09:21:31 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:74,844,317
INFO 2026-06-08 09:21:31 MarkDuplicates Tracking 311719 as yet unmatched pairs. 19219 records in RAM.
INFO 2026-06-08 09:21:33 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,609
INFO 2026-06-08 09:21:33 MarkDuplicates Tracking 311107 as yet unmatched pairs. 18599 records in RAM.
INFO 2026-06-08 09:21:35 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:77,402,431
INFO 2026-06-08 09:21:35 MarkDuplicates Tracking 305717 as yet unmatched pairs. 13196 records in RAM.
INFO 2026-06-08 09:21:36 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:80,139,120
INFO 2026-06-08 09:21:36 MarkDuplicates Tracking 303939 as yet unmatched pairs. 11406 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,251
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 300327 as yet unmatched pairs. 7783 records in RAM.
INFO 2026-06-08 09:21:39 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:81,996,525
INFO 2026-06-08 09:21:39 MarkDuplicates Tracking 296206 as yet unmatched pairs. 3653 records in RAM.
INFO 2026-06-08 09:21:41 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:82,929,246
INFO 2026-06-08 09:21:41 MarkDuplicates Tracking 292783 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 09:21:43 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr18:9,102,784
INFO 2026-06-08 09:21:43 MarkDuplicates Tracking 290494 as yet unmatched pairs. 19507 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr18:13,073,083
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 287538 as yet unmatched pairs. 16544 records in RAM.
INFO 2026-06-08 09:21:48 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 2s. Last read position: chr18:28,005,878
INFO 2026-06-08 09:21:48 MarkDuplicates Tracking 285423 as yet unmatched pairs. 14416 records in RAM.
INFO 2026-06-08 09:21:49 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr18:41,996,700
INFO 2026-06-08 09:21:49 MarkDuplicates Tracking 282290 as yet unmatched pairs. 11274 records in RAM.
INFO 2026-06-08 09:21:51 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr18:49,794,206
INFO 2026-06-08 09:21:51 MarkDuplicates Tracking 280598 as yet unmatched pairs. 9570 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr18:58,919,056
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 277247 as yet unmatched pairs. 6196 records in RAM.
INFO 2026-06-08 09:21:54 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr18:74,520,014
INFO 2026-06-08 09:21:54 MarkDuplicates Tracking 273775 as yet unmatched pairs. 2717 records in RAM.
INFO 2026-06-08 09:21:56 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 2s. Last read position: chr19:438,757
INFO 2026-06-08 09:21:56 MarkDuplicates Tracking 271617 as yet unmatched pairs. 117642 records in RAM.
INFO 2026-06-08 09:21:58 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:1,011,471
INFO 2026-06-08 09:21:58 MarkDuplicates Tracking 268492 as yet unmatched pairs. 114512 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,350
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 263681 as yet unmatched pairs. 109698 records in RAM.
INFO 2026-06-08 09:22:02 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:2,246,991
INFO 2026-06-08 09:22:02 MarkDuplicates Tracking 261047 as yet unmatched pairs. 107057 records in RAM.
INFO 2026-06-08 09:22:04 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:3,435,130
INFO 2026-06-08 09:22:04 MarkDuplicates Tracking 257597 as yet unmatched pairs. 103604 records in RAM.
INFO 2026-06-08 09:22:06 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:4,929,261
INFO 2026-06-08 09:22:06 MarkDuplicates Tracking 254465 as yet unmatched pairs. 100466 records in RAM.
INFO 2026-06-08 09:22:07 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:5,654,103
INFO 2026-06-08 09:22:07 MarkDuplicates Tracking 250557 as yet unmatched pairs. 96550 records in RAM.
INFO 2026-06-08 09:22:10 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr19:7,520,566
INFO 2026-06-08 09:22:10 MarkDuplicates Tracking 247324 as yet unmatched pairs. 93312 records in RAM.
INFO 2026-06-08 09:22:12 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr19:8,455,460
INFO 2026-06-08 09:22:12 MarkDuplicates Tracking 245700 as yet unmatched pairs. 91679 records in RAM.
INFO 2026-06-08 09:22:13 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:10,180,404
INFO 2026-06-08 09:22:13 MarkDuplicates Tracking 243409 as yet unmatched pairs. 89383 records in RAM.
INFO 2026-06-08 09:22:15 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:10,987,871
INFO 2026-06-08 09:22:15 MarkDuplicates Tracking 238667 as yet unmatched pairs. 84633 records in RAM.
INFO 2026-06-08 09:22:17 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:12,677,195
INFO 2026-06-08 09:22:17 MarkDuplicates Tracking 236208 as yet unmatched pairs. 82163 records in RAM.
INFO 2026-06-08 09:22:18 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:13,081,776
INFO 2026-06-08 09:22:18 MarkDuplicates Tracking 234178 as yet unmatched pairs. 80132 records in RAM.
INFO 2026-06-08 09:22:20 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:14,409,811
INFO 2026-06-08 09:22:20 MarkDuplicates Tracking 229686 as yet unmatched pairs. 75636 records in RAM.
INFO 2026-06-08 09:22:21 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:15,264,414
INFO 2026-06-08 09:22:21 MarkDuplicates Tracking 227617 as yet unmatched pairs. 73566 records in RAM.
INFO 2026-06-08 09:22:23 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:17,198,240
INFO 2026-06-08 09:22:23 MarkDuplicates Tracking 223363 as yet unmatched pairs. 69299 records in RAM.
INFO 2026-06-08 09:22:24 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:18,355,996
INFO 2026-06-08 09:22:24 MarkDuplicates Tracking 220237 as yet unmatched pairs. 66169 records in RAM.
INFO 2026-06-08 09:22:26 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:19,024,992
INFO 2026-06-08 09:22:26 MarkDuplicates Tracking 218643 as yet unmatched pairs. 64573 records in RAM.
INFO 2026-06-08 09:22:27 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:30,005,428
INFO 2026-06-08 09:22:27 MarkDuplicates Tracking 215106 as yet unmatched pairs. 61029 records in RAM.
INFO 2026-06-08 09:22:29 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:34,684,888
INFO 2026-06-08 09:22:29 MarkDuplicates Tracking 211588 as yet unmatched pairs. 57499 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:35,788,015
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 207840 as yet unmatched pairs. 53750 records in RAM.
INFO 2026-06-08 09:22:33 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr19:38,376,204
INFO 2026-06-08 09:22:33 MarkDuplicates Tracking 206128 as yet unmatched pairs. 52033 records in RAM.
INFO 2026-06-08 09:22:35 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:39,383,691
INFO 2026-06-08 09:22:35 MarkDuplicates Tracking 202394 as yet unmatched pairs. 48293 records in RAM.
INFO 2026-06-08 09:22:37 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:40,236,353
INFO 2026-06-08 09:22:37 MarkDuplicates Tracking 199936 as yet unmatched pairs. 45828 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:41,292,331
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 198763 as yet unmatched pairs. 44637 records in RAM.
INFO 2026-06-08 09:22:39 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,446
INFO 2026-06-08 09:22:39 MarkDuplicates Tracking 193894 as yet unmatched pairs. 39752 records in RAM.
INFO 2026-06-08 09:22:42 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr19:42,292,836
INFO 2026-06-08 09:22:42 MarkDuplicates Tracking 193572 as yet unmatched pairs. 39430 records in RAM.
INFO 2026-06-08 09:22:43 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:44,235,019
INFO 2026-06-08 09:22:43 MarkDuplicates Tracking 187257 as yet unmatched pairs. 33100 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:46,016,730
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 183919 as yet unmatched pairs. 29759 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:47,680,463
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 180839 as yet unmatched pairs. 26677 records in RAM.
INFO 2026-06-08 09:22:48 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,086,446
INFO 2026-06-08 09:22:48 MarkDuplicates Tracking 178734 as yet unmatched pairs. 24568 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,653,658
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 174948 as yet unmatched pairs. 20773 records in RAM.
INFO 2026-06-08 09:22:52 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:51,350,362
INFO 2026-06-08 09:22:52 MarkDuplicates Tracking 171515 as yet unmatched pairs. 17330 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:54,160,896
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 168800 as yet unmatched pairs. 14609 records in RAM.
INFO 2026-06-08 09:22:55 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:55,407,608
INFO 2026-06-08 09:22:55 MarkDuplicates Tracking 166399 as yet unmatched pairs. 12202 records in RAM.
INFO 2026-06-08 09:22:57 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:56,815,011
INFO 2026-06-08 09:22:57 MarkDuplicates Tracking 166944 as yet unmatched pairs. 12741 records in RAM.
INFO 2026-06-08 09:22:59 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:56,822,799
INFO 2026-06-08 09:22:59 MarkDuplicates Tracking 169604 as yet unmatched pairs. 15395 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:57,980,105
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 157963 as yet unmatched pairs. 3753 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr20:326,347
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 154115 as yet unmatched pairs. 44182 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:3,786,281
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 151362 as yet unmatched pairs. 41421 records in RAM.
INFO 2026-06-08 09:23:05 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:17,570,180
INFO 2026-06-08 09:23:05 MarkDuplicates Tracking 148977 as yet unmatched pairs. 39035 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:22,581,975
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 145110 as yet unmatched pairs. 35168 records in RAM.
INFO 2026-06-08 09:23:08 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:32,833,722
INFO 2026-06-08 09:23:08 MarkDuplicates Tracking 142764 as yet unmatched pairs. 32818 records in RAM.
INFO 2026-06-08 09:23:10 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:34,997,449
INFO 2026-06-08 09:23:10 MarkDuplicates Tracking 138990 as yet unmatched pairs. 29038 records in RAM.
INFO 2026-06-08 09:23:12 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:36,766,286
INFO 2026-06-08 09:23:12 MarkDuplicates Tracking 136411 as yet unmatched pairs. 26456 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:37,522,407
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 150211 as yet unmatched pairs. 40249 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:40,688,640
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 130407 as yet unmatched pairs. 20440 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:45,416,293
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 127211 as yet unmatched pairs. 17241 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr20:47,347,866
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 124336 as yet unmatched pairs. 14359 records in RAM.
INFO 2026-06-08 09:23:19 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:50,902,031
INFO 2026-06-08 09:23:19 MarkDuplicates Tracking 123296 as yet unmatched pairs. 13319 records in RAM.
INFO 2026-06-08 09:23:21 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:58,903,537
INFO 2026-06-08 09:23:21 MarkDuplicates Tracking 120640 as yet unmatched pairs. 10654 records in RAM.
INFO 2026-06-08 09:23:23 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:62,330,865
INFO 2026-06-08 09:23:23 MarkDuplicates Tracking 115088 as yet unmatched pairs. 5097 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:63,869,304
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 112242 as yet unmatched pairs. 2247 records in RAM.
INFO 2026-06-08 09:23:25 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,948
INFO 2026-06-08 09:23:25 MarkDuplicates Tracking 109201 as yet unmatched pairs. 15076 records in RAM.
INFO 2026-06-08 09:23:27 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:26,924,535
INFO 2026-06-08 09:23:27 MarkDuplicates Tracking 107242 as yet unmatched pairs. 13113 records in RAM.
INFO 2026-06-08 09:23:28 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr21:33,546,227
INFO 2026-06-08 09:23:28 MarkDuplicates Tracking 104948 as yet unmatched pairs. 10817 records in RAM.
INFO 2026-06-08 09:23:30 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr21:37,150,140
INFO 2026-06-08 09:23:30 MarkDuplicates Tracking 103240 as yet unmatched pairs. 9107 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr21:41,991,210
INFO 2026-06-08 09:23:31 MarkDuplicates Tracking 99822 as yet unmatched pairs. 5685 records in RAM.
INFO 2026-06-08 09:23:33 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr21:45,911,009
INFO 2026-06-08 09:23:33 MarkDuplicates Tracking 96496 as yet unmatched pairs. 2353 records in RAM.
INFO 2026-06-08 09:23:35 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr22:18,079,908
INFO 2026-06-08 09:23:35 MarkDuplicates Tracking 93428 as yet unmatched pairs. 46278 records in RAM.
INFO 2026-06-08 09:23:36 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:20,582,534
INFO 2026-06-08 09:23:36 MarkDuplicates Tracking 90042 as yet unmatched pairs. 42889 records in RAM.
INFO 2026-06-08 09:23:39 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 2s. Last read position: chr22:23,268,428
INFO 2026-06-08 09:23:39 MarkDuplicates Tracking 88000 as yet unmatched pairs. 40845 records in RAM.
INFO 2026-06-08 09:23:40 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:24,568,154
INFO 2026-06-08 09:23:40 MarkDuplicates Tracking 85862 as yet unmatched pairs. 38703 records in RAM.
INFO 2026-06-08 09:23:42 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:29,272,230
INFO 2026-06-08 09:23:42 MarkDuplicates Tracking 83603 as yet unmatched pairs. 36443 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:29,298,831
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 80263 as yet unmatched pairs. 33103 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:30,888,222
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 75328 as yet unmatched pairs. 28168 records in RAM.
INFO 2026-06-08 09:23:47 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr22:35,415,916
INFO 2026-06-08 09:23:47 MarkDuplicates Tracking 72553 as yet unmatched pairs. 25391 records in RAM.
INFO 2026-06-08 09:23:49 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr22:37,474,618
INFO 2026-06-08 09:23:49 MarkDuplicates Tracking 69301 as yet unmatched pairs. 22139 records in RAM.
INFO 2026-06-08 09:23:50 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:38,298,855
INFO 2026-06-08 09:23:50 MarkDuplicates Tracking 66053 as yet unmatched pairs. 18889 records in RAM.
INFO 2026-06-08 09:23:52 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,454
INFO 2026-06-08 09:23:52 MarkDuplicates Tracking 63098 as yet unmatched pairs. 15933 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:41,330,041
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 60556 as yet unmatched pairs. 13388 records in RAM.
INFO 2026-06-08 09:23:55 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr22:42,211,323
INFO 2026-06-08 09:23:55 MarkDuplicates Tracking 58254 as yet unmatched pairs. 11086 records in RAM.
INFO 2026-06-08 09:23:57 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:45,527,929
INFO 2026-06-08 09:23:57 MarkDuplicates Tracking 54247 as yet unmatched pairs. 7077 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr22:50,283,339
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 51650 as yet unmatched pairs. 4468 records in RAM.
INFO 2026-06-08 09:24:01 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chrX:290,689
INFO 2026-06-08 09:24:01 MarkDuplicates Tracking 47317 as yet unmatched pairs. 43669 records in RAM.
INFO 2026-06-08 09:24:03 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:18,579,869
INFO 2026-06-08 09:24:03 MarkDuplicates Tracking 44298 as yet unmatched pairs. 40647 records in RAM.
INFO 2026-06-08 09:24:04 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:24,704,429
INFO 2026-06-08 09:24:04 MarkDuplicates Tracking 41729 as yet unmatched pairs. 38078 records in RAM.
INFO 2026-06-08 09:24:06 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,074
INFO 2026-06-08 09:24:06 MarkDuplicates Tracking 39807 as yet unmatched pairs. 36156 records in RAM.
INFO 2026-06-08 09:24:08 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:45,020,673
INFO 2026-06-08 09:24:08 MarkDuplicates Tracking 36345 as yet unmatched pairs. 32694 records in RAM.
INFO 2026-06-08 09:24:09 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:48,802,741
INFO 2026-06-08 09:24:09 MarkDuplicates Tracking 33365 as yet unmatched pairs. 29714 records in RAM.
INFO 2026-06-08 09:24:11 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:53,380,021
INFO 2026-06-08 09:24:11 MarkDuplicates Tracking 30857 as yet unmatched pairs. 27204 records in RAM.
INFO 2026-06-08 09:24:12 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:54,540,173
INFO 2026-06-08 09:24:12 MarkDuplicates Tracking 27627 as yet unmatched pairs. 23974 records in RAM.
INFO 2026-06-08 09:24:14 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:71,294,265
INFO 2026-06-08 09:24:14 MarkDuplicates Tracking 26632 as yet unmatched pairs. 22978 records in RAM.
INFO 2026-06-08 09:24:15 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:77,521,450
INFO 2026-06-08 09:24:15 MarkDuplicates Tracking 23888 as yet unmatched pairs. 20234 records in RAM.
INFO 2026-06-08 09:24:17 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:91,835,584
INFO 2026-06-08 09:24:17 MarkDuplicates Tracking 20150 as yet unmatched pairs. 16496 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:111,330,916
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 19349 as yet unmatched pairs. 15689 records in RAM.
INFO 2026-06-08 09:24:20 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:129,465,597
INFO 2026-06-08 09:24:20 MarkDuplicates Tracking 14305 as yet unmatched pairs. 10645 records in RAM.
INFO 2026-06-08 09:24:22 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:143,629,383
INFO 2026-06-08 09:24:22 MarkDuplicates Tracking 11654 as yet unmatched pairs. 7994 records in RAM.
INFO 2026-06-08 09:24:23 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:153,870,460
INFO 2026-06-08 09:24:23 MarkDuplicates Tracking 9243 as yet unmatched pairs. 5583 records in RAM.
INFO 2026-06-08 09:24:25 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:154,399,834
INFO 2026-06-08 09:24:25 MarkDuplicates Tracking 7292 as yet unmatched pairs. 3632 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrY:14,824,257
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 2879 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,115
INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 95 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 626159202 records. 0 pairs never matched.
INFO 2026-06-08 09:25:18 MarkDuplicates After buildSortedReadEndLists freeMemory: 204144360; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:25:18 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:25:22 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:25:22 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,990
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,346
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder Large duplicate set. size = 1509
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,041
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder Large duplicate set. size = 1596
INFO 2026-06-08 09:25:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,814
INFO 2026-06-08 09:25:50 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:25:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,490
INFO 2026-06-08 09:26:04 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:26:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,079
INFO 2026-06-08 09:26:14 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:26:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,746
INFO 2026-06-08 09:26:15 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:26:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,867
INFO 2026-06-08 09:26:15 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:26:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,371
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 1648
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,631
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 2379
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,644
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,430
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 1996
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,493
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 2898
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,780
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,341
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,129
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 1138
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,820
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 1741
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,035
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 2564
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,603
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,968
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,948
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder Large duplicate set. size = 1738
INFO 2026-06-08 09:26:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,575
INFO 2026-06-08 09:26:46 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:26:47 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:27:51 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:27:51 MarkDuplicates After generateDuplicateIndexes freeMemory: 203971088; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:27:51 MarkDuplicates Marking 268187954 records as duplicates.
INFO 2026-06-08 09:27:51 MarkDuplicates Found 28599035 optical duplicate clusters.
INFO 2026-06-08 09:27:51 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:28:07 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:16,582,617
INFO 2026-06-08 09:28:22 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:31,260,044
INFO 2026-06-08 09:28:38 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:46,031,542
INFO 2026-06-08 09:28:53 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 15s. Last read position: chr1:109,107,038
INFO 2026-06-08 09:29:09 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 15s. Last read position: chr1:149,887,172
INFO 2026-06-08 09:29:24 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 15s. Last read position: chr1:156,134,818
INFO 2026-06-08 09:29:39 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 15s. Last read position: chr1:201,782,850
INFO 2026-06-08 09:29:55 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 15s. Last read position: chr1:222,665,557
INFO 2026-06-08 09:30:10 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 15s. Last read position: chr2:9,327,894
INFO 2026-06-08 09:30:25 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 15s. Last read position: chr2:37,013,883
INFO 2026-06-08 09:30:41 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:49s. Time for last 10,000,000: 15s. Last read position: chr2:88,613,826
INFO 2026-06-08 09:30:56 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 15s. Last read position: chr2:156,549,753
INFO 2026-06-08 09:31:12 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 15s. Last read position: chr2:218,666,011
INFO 2026-06-08 09:31:27 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:36s. Time for last 10,000,000: 15s. Last read position: chr3:46,999,430
INFO 2026-06-08 09:31:43 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 16s. Last read position: chr3:133,649,527
INFO 2026-06-08 09:31:59 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:07s. Time for last 10,000,000: 15s. Last read position: chr3:195,786,981
INFO 2026-06-08 09:32:14 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 15s. Last read position: chr4:73,069,431
INFO 2026-06-08 09:32:30 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 15s. Last read position: chr4:186,621,303
INFO 2026-06-08 09:32:45 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 15s. Last read position: chr5:38,950,470
INFO 2026-06-08 09:33:01 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 15s. Last read position: chr5:137,498,408
INFO 2026-06-08 09:33:17 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 15s. Last read position: chr5:177,310,677
INFO 2026-06-08 09:33:32 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 15s. Last read position: chr6:26,156,656
INFO 2026-06-08 09:33:47 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:55s. Time for last 10,000,000: 14s. Last read position: chr6:31,634,851
INFO 2026-06-08 09:34:02 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:11s. Time for last 10,000,000: 15s. Last read position: chr6:71,288,981
INFO 2026-06-08 09:34:18 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:26s. Time for last 10,000,000: 15s. Last read position: chr6:158,776,407
INFO 2026-06-08 09:34:33 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:42s. Time for last 10,000,000: 15s. Last read position: chr7:44,799,777
INFO 2026-06-08 09:34:48 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 15s. Last read position: chr7:100,577,487
INFO 2026-06-08 09:35:04 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:12s. Time for last 10,000,000: 15s. Last read position: chr7:152,248,318
INFO 2026-06-08 09:35:20 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 16s. Last read position: chr8:63,186,747
INFO 2026-06-08 09:35:35 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 15s. Last read position: chr9:8,449,779
INFO 2026-06-08 09:35:51 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 15s. Last read position: chr9:106,926,769
INFO 2026-06-08 09:36:06 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 15s. Last read position: chr9:136,285,404
INFO 2026-06-08 09:36:22 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 15s. Last read position: chr10:58,388,213
INFO 2026-06-08 09:36:37 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:46s. Time for last 10,000,000: 15s. Last read position: chr10:110,881,460
INFO 2026-06-08 09:36:52 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:01s. Time for last 10,000,000: 15s. Last read position: chr11:34,097,207
INFO 2026-06-08 09:37:08 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 15s. Last read position: chr11:65,573,457
INFO 2026-06-08 09:37:23 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 15s. Last read position: chr11:115,831,674
INFO 2026-06-08 09:37:38 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 15s. Last read position: chr12:23,781,666
INFO 2026-06-08 09:37:53 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:02s. Time for last 10,000,000: 15s. Last read position: chr12:54,283,945
INFO 2026-06-08 09:38:09 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:17s. Time for last 10,000,000: 15s. Last read position: chr12:111,709,529
INFO 2026-06-08 09:38:24 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 15s. Last read position: chr13:44,575,637
INFO 2026-06-08 09:38:39 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:47s. Time for last 10,000,000: 15s. Last read position: chr14:39,176,078
INFO 2026-06-08 09:38:54 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 15s. Last read position: chr14:99,517,149
INFO 2026-06-08 09:39:09 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:18s. Time for last 10,000,000: 14s. Last read position: chr15:44,338,289
INFO 2026-06-08 09:39:24 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 15s. Last read position: chr15:84,512,744
INFO 2026-06-08 09:39:39 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:48s. Time for last 10,000,000: 14s. Last read position: chr16:11,768,315
INFO 2026-06-08 09:39:54 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:03s. Time for last 10,000,000: 15s. Last read position: chr16:30,095,277
INFO 2026-06-08 09:40:09 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 14s. Last read position: chr16:71,861,819
INFO 2026-06-08 09:40:25 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:33s. Time for last 10,000,000: 15s. Last read position: chr17:6,445,358
INFO 2026-06-08 09:40:39 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:48s. Time for last 10,000,000: 14s. Last read position: chr17:29,608,874
INFO 2026-06-08 09:40:55 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:04s. Time for last 10,000,000: 15s. Last read position: chr17:45,453,555
INFO 2026-06-08 09:41:12 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:21s. Time for last 10,000,000: 17s. Last read position: chr17:68,933,190
INFO 2026-06-08 09:41:29 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:37s. Time for last 10,000,000: 16s. Last read position: chr18:28,005,878