File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/8171ccd9d2a85ee2a274ea2a9cd401/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/b8741e5b983523657d189285c91962/aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/1a91679b6310a5d71593ac82fb9b1c/aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/8171ccd9d2a85ee2a274ea2a9cd401/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/8171ccd9d2a85ee2a274ea2a9cd401/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 292624215
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	292624215
Known Splicing Events:	289648239
Partial Novel Splicing Events:	1779366
Novel Splicing Events:	1097151
Filtered Splicing Events:	99459

Total splicing  Junctions:	478379
Known Splicing Junctions:	265043
Partial Novel Splicing Junctions:	132456
Novel Splicing Junctions:	80880

===================================================================
Create BED file ...
Create Interact file ...