File Info

Filename
aih-tih-sc-5ef3cb-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/a04e6b1a84269c72052322ee552dca/aih-tih-sc-5ef3cb-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:29:47
                             Started mapping on |	Jun 08 08:31:26
                                    Finished on |	Jun 08 09:26:22
       Mapping speed, Million of reads per hour |	300.59

                          Number of input reads |	275207362
                      Average input read length |	252
                                    UNIQUE READS:
                   Uniquely mapped reads number |	261276762
                        Uniquely mapped reads % |	94.94%
                          Average mapped length |	252.34
                       Number of splices: Total |	222207000
            Number of splices: Annotated (sjdb) |	215605589
                       Number of splices: GT/AG |	219959201
                       Number of splices: GC/AG |	1680234
                       Number of splices: AT/AC |	150581
               Number of splices: Non-canonical |	416984
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.64
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7741770
             % of reads mapped to multiple loci |	2.81%
        Number of reads mapped to too many loci |	492573
             % of reads mapped to too many loci |	0.18%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	595258
       % of reads unmapped: too many mismatches |	0.22%
            Number of reads unmapped: too short |	3129114
                 % of reads unmapped: too short |	1.14%
                Number of reads unmapped: other |	390504
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3646721
                            % of chimeric reads |	1.33%