Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/4ea539895f224e1427a94ee0e8d7a2/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/ae16415c904bc7de51db57b88e346d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/ae16415c904bc7de51db57b88e346d/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
Processed 269000000 records
Processed 270000000 records
Processed 271000000 records
Processed 272000000 records
Processed 273000000 records
Processed 274000000 records
Processed 275000000 records
Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
Processed 282000000 records
Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
Processed 286000000 records
Processed 287000000 records
Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
Processed 291000000 records
Processed 292000000 records
Processed 293000000 records
Processed 294000000 records
Processed 295000000 records
Processed 296000000 records
Processed 297000000 records
Processed 298000000 records
Processed 299000000 records
Processed 300000000 records
Processed 301000000 records
Processed 302000000 records
Processed 303000000 records
Processed 304000000 records
Processed 305000000 records
Processed 306000000 records
Processed 307000000 records
Processed 308000000 records
Processed 309000000 records
Processed 310000000 records
Processed 311000000 records
Processed 312000000 records
Processed 313000000 records
Processed 314000000 records
Processed 315000000 records
Processed 316000000 records
Processed 317000000 records
Processed 318000000 records
Processed 319000000 records
Processed 320000000 records
Processed 321000000 records
Processed 322000000 records
Processed 323000000 records
Processed 324000000 records
Processed 325000000 records
Processed 326000000 records
Processed 327000000 records
Processed 328000000 records
Processed 329000000 records
Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
Processed 334000000 records
Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
Processed 339000000 records
Processed 340000000 records
Processed 341000000 records
Processed 342000000 records
Processed 343000000 records
Processed 344000000 records
Processed 345000000 records
Processed 346000000 records
Processed 347000000 records
Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
Processed 373000000 records
Processed 374000000 records
Processed 375000000 records
Processed 376000000 records
Processed 377000000 records
Processed 378000000 records
Processed 379000000 records
Processed 380000000 records
Processed 381000000 records
Processed 382000000 records
Processed 383000000 records
Processed 384000000 records
Processed 385000000 records
Processed 386000000 records
Processed 387000000 records
Processed 388000000 records
Processed 389000000 records
Processed 390000000 records
Processed 391000000 records
Processed 392000000 records
Processed 393000000 records
Processed 394000000 records
Processed 395000000 records
Processed 396000000 records
Processed 397000000 records
Processed 398000000 records
Processed 399000000 records
Processed 400000000 records
Processed 401000000 records
Processed 402000000 records
Processed 403000000 records
Processed 404000000 records
Processed 405000000 records
Processed 406000000 records
Processed 407000000 records
Processed 408000000 records
Processed 409000000 records
Processed 410000000 records
Processed 411000000 records
Processed 412000000 records
Processed 413000000 records
Processed 414000000 records
Processed 415000000 records
Processed 416000000 records
Processed 417000000 records
Processed 418000000 records
Processed 419000000 records
Processed 420000000 records
Processed 421000000 records
Processed 422000000 records
Processed 423000000 records
Processed 424000000 records
Processed 425000000 records
Processed 426000000 records
Processed 427000000 records
Processed 428000000 records
Processed 429000000 records
Processed 430000000 records
Processed 431000000 records
Processed 432000000 records
Processed 433000000 records
Processed 434000000 records
Processed 435000000 records
Processed 436000000 records
Processed 437000000 records
Processed 438000000 records
Processed 439000000 records
Processed 440000000 records
Processed 441000000 records
Processed 442000000 records
Processed 443000000 records
Processed 444000000 records
Processed 445000000 records
Processed 446000000 records
Processed 447000000 records
Processed 448000000 records
paired = 221993905
unpaired = 4177538
MERGED PAIRED END READS = 221993905
MATES PROCESSED = 448165348
TOTAL READS     = 226171443
DISTINCT READS  = 9.8488e+07
DISTINCT COUNTS = 892
MAX COUNT       = 986279
COUNTS OF 1     = 5.01884e+07
MAX TERMS       = 100
OBSERVED COUNTS (986280)
1	50188414
2	23058414
3	11125939
4	5607503
5	2997987
6	1704032
7	1037249
8	665883
9	450462
10	317753
11	232412
12	175550
13	135215
14	107097
15	85686
16	70259
17	58256
18	49013
19	41188
20	35854
21	30784
22	26916
23	23292
24	20509
25	18074
26	16225
27	14482
28	13111
29	11619
30	10522
31	9612
32	8731
33	7922
34	7226
35	6749
36	6389
37	5696
38	5370
39	4798
40	4602
41	4248
42	3991
43	3775
44	3393
45	3197
46	3032
47	2920
48	2670
49	2404
50	2334
51	2302
52	2143
53	1988
54	1857
55	1805
56	1687
57	1649
58	1454
59	1444
60	1355
61	1409
62	1213
63	1198
64	1165
65	1062
66	1046
67	947
68	969
69	914
70	886
71	826
72	822
73	808
74	733
75	732
76	699
77	656
78	664
79	603
80	580
81	564
82	526
83	544
84	515
85	471
86	448
87	472
88	453
89	425
90	401
91	385
92	373
93	377
94	373
95	364
96	372
97	348
98	350
99	355
100	304
101	323
102	302
103	319
104	269
105	268
106	241
107	252
108	253
109	246
110	223
111	214
112	218
113	207
114	227
115	238
116	189
117	178
118	203
119	162
120	178
121	149
122	181
123	169
124	159
125	146
126	148
127	147
128	132
129	126
130	131
131	142
132	149
133	137
134	132
135	130
136	116
137	109
138	132
139	142
140	140
141	103
142	122
143	119
144	84
145	80
146	80
147	100
148	94
149	101
150	89
151	89
152	87
153	92
154	76
155	82
156	82
157	84
158	88
159	75
160	64
161	70
162	78
163	65
164	70
165	69
166	66
167	75
168	59
169	63
170	51
171	60
172	46
173	62
174	48
175	66
176	46
177	55
178	64
179	62
180	48
181	57
182	52
183	53
184	53
185	51
186	42
187	58
188	44
189	28
190	44
191	50
192	39
193	44
194	47
195	46
196	40
197	36
198	45
199	39
200	32
201	54
202	53
203	48
204	37
205	34
206	30
207	24
208	34
209	27
210	42
211	37
212	27
213	39
214	39
215	28
216	28
217	25
218	19
219	35
220	31
221	20
222	29
223	28
224	27
225	26
226	24
227	23
228	30
229	31
230	31
231	25
232	29
233	22
234	22
235	24
236	17
237	23
238	14
239	21
240	21
241	23
242	15
243	24
244	18
245	24
246	14
247	22
248	24
249	17
250	17
251	18
252	17
253	24
254	20
255	14
256	20
257	15
258	17
259	17
260	17
261	12
262	16
263	11
264	10
265	20
266	15
267	17
268	16
269	14
270	18
271	13
272	12
273	16
274	13
275	12
276	12
277	10
278	22
279	20
280	14
281	13
282	11
283	12
284	12
285	16
286	10
287	17
288	11
289	13
290	10
291	11
292	11
293	14
294	13
295	17
296	16
297	19
298	20
299	6
300	11
301	13
302	17
303	13
304	9
305	4
306	8
307	9
308	13
309	12
310	8
311	6
312	11
313	6
314	12
315	11
316	11
317	3
318	7
319	9
320	11
321	12
322	9
323	10
324	12
325	9
326	7
327	7
328	3
329	12
330	6
331	8
332	10
333	6
334	15
335	8
336	7
337	8
338	10
339	6
340	6
341	7
342	6
343	13
344	6
345	4
346	3
347	8
348	10
349	6
350	8
351	8
352	5
353	3
354	9
355	3
356	8
357	6
358	11
359	7
360	5
361	3
362	5
363	7
364	6
365	7
366	4
367	3
368	8
369	3
370	7
371	3
372	7
373	9
374	4
375	7
376	5
377	2
378	3
379	6
380	8
381	3
382	4
383	4
384	2
385	3
386	2
387	3
388	7
389	6
390	9
391	14
392	6
393	3
394	7
395	2
396	1
397	9
398	2
399	3
400	11
401	4
402	7
403	6
404	2
405	4
406	5
407	3
408	7
409	4
410	3
411	6
412	2
413	1
414	6
415	6
416	3
418	3
419	5
420	2
421	6
422	3
423	5
424	7
425	5
426	3
427	6
428	9
429	1
430	3
431	3
432	4
433	4
435	2
436	3
437	6
438	4
439	4
440	5
441	2
442	5
443	2
444	4
445	3
446	3
447	3
448	5
449	2
450	4
452	3
453	2
455	1
456	3
457	6
458	3
459	1
460	4
461	2
462	3
463	6
464	5
465	2
466	1
467	5
468	5
469	4
470	1
471	4
473	2
474	3
475	6
477	2
479	2
480	2
481	3
482	2
483	3
484	2
485	2
486	2
487	3
488	4
489	4
490	3
491	2
492	4
493	5
494	2
495	7
496	3
497	5
498	1
499	3
500	1
502	2
504	3
505	2
506	1
507	2
508	3
509	4
510	6
512	2
513	4
514	3
515	2
516	2
517	1
518	2
519	2
520	3
521	4
522	3
523	2
524	3
525	2
527	2
528	1
529	5
530	3
531	2
532	2
533	4
534	2
535	5
537	2
538	3
539	2
540	4
541	1
543	1
544	2
545	1
546	4
547	3
549	2
552	3
553	2
555	2
556	1
557	3
558	3
559	4
560	1
561	1
562	1
564	1
565	4
567	2
568	1
571	2
572	1
573	1
574	1
576	1
577	4
578	1
579	3
580	2
581	1
582	3
583	3
585	1
586	2
587	2
588	1
589	1
591	1
592	2
595	2
596	3
597	1
598	2
600	2
601	3
602	2
604	1
606	2
607	2
608	2
609	1
610	1
611	1
612	3
613	1
614	1
615	3
616	1
619	1
620	1
621	2
623	2
625	1
627	2
628	1
629	1
631	3
632	1
634	2
635	1
636	1
637	1
638	2
641	1
642	2
644	1
646	2
647	3
648	2
650	1
651	1
652	2
653	1
654	1
655	1
656	2
657	2
658	1
663	2
666	3
668	1
669	4
671	2
673	1
676	1
681	2
682	2
684	1
686	2
690	3
692	1
696	2
701	1
703	1
704	2
707	1
709	2
710	1
711	1
712	3
713	2
714	2
715	1
717	2
719	1
724	1
725	1
727	1
728	2
729	2
735	1
737	1
741	1
742	1
743	1
746	1
748	1
749	1
750	2
753	1
754	1
762	1
763	1
765	2
766	1
767	2
768	1
773	1
780	1
785	1
787	1
789	1
792	1
795	1
799	1
801	1
803	1
807	1
810	1
811	2
813	2
814	1
817	1
818	1
819	1
821	1
826	1
827	2
829	1
832	1
834	1
836	1
838	1
839	1
843	1
844	2
848	1
854	1
855	2
858	1
860	1
868	1
871	1
872	1
874	3
875	2
880	2
883	2
885	1
892	1
899	1
902	1
903	1
904	1
905	1
906	1
912	2
913	1
915	2
922	1
925	1
927	1
934	1
938	1
941	1
949	2
952	1
955	1
956	1
957	1
960	1
969	1
970	1
974	1
976	2
978	1
980	1
983	1
987	1
994	2
1000	1
1010	1
1026	1
1028	1
1029	1
1030	1
1044	1
1047	1
1054	1
1055	1
1068	1
1082	1
1083	1
1101	1
1108	1
1113	1
1114	1
1116	2
1117	1
1121	2
1128	1
1138	1
1144	1
1148	1
1153	1
1165	1
1166	1
1174	1
1177	1
1183	1
1188	1
1212	1
1213	1
1218	1
1219	1
1223	1
1232	1
1243	1
1246	1
1248	1
1250	1
1259	1
1269	1
1285	1
1291	1
1305	1
1306	1
1309	2
1312	1
1328	1
1329	1
1337	1
1338	1
1339	1
1345	1
1359	1
1362	1
1367	1
1377	1
1380	1
1381	1
1392	1
1416	1
1422	1
1424	1
1440	1
1451	1
1452	1
1455	1
1477	1
1483	1
1485	1
1500	1
1508	1
1509	1
1514	1
1524	1
1534	2
1551	1
1566	1
1582	1
1591	1
1595	1
1598	1
1627	1
1640	1
1641	1
1650	1
1651	1
1652	1
1657	1
1660	1
1661	1
1662	1
1668	1
1669	1
1692	1
1695	1
1714	1
1728	1
1737	1
1753	1
1755	1
1756	1
1761	1
1770	1
1786	1
1803	1
1805	1
1823	2
1841	1
1851	1
1858	1
1859	1
1875	1
1882	1
1939	1
1946	2
1967	1
1973	1
1975	1
2049	1
2074	1
2076	1
2218	1
2247	1
2332	1
2359	1
2382	1
2432	1
2446	1
2461	1
2643	1
2650	1
2766	1
2883	1
2901	1
2940	1
2954	1
2997	1
3028	1
3124	1
3397	1
3629	1
4381	1
4570	1
5189	1
6507	1
10832	1
12639	1
12775	1
46346	1
986279	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._._._......_.._...._....._..._..._..._