Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/b1b2cdc9f443477ce783ad018fb008/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1fffb548fa4e10c9ec207fcbade05d/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/b1b2cdc9f443477ce783ad018fb008/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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paired = 187115490
unpaired = 3889706
MERGED PAIRED END READS = 187115490
MATES PROCESSED = 378120686
TOTAL READS = 191005196
DISTINCT READS = 1.03462e+08
DISTINCT COUNTS = 814
MAX COUNT = 962139
COUNTS OF 1 = 6.48557e+07
MAX TERMS = 100
OBSERVED COUNTS (962140)
1 64855688
2 21907405
3 8346813
4 3590349
5 1738724
6 935130
7 552613
8 352110
9 238867
10 170844
11 125943
12 96079
13 75295
14 60501
15 49101
16 40889
17 34115
18 28539
19 24534
20 21457
21 18309
22 16297
23 14248
24 12494
25 11168
26 10065
27 9031
28 8233
29 7416
30 6623
31 6052
32 5515
33 5177
34 4602
35 4297
36 3928
37 3586
38 3406
39 3164
40 2955
41 2706
42 2589
43 2348
44 2304
45 2024
46 1929
47 1775
48 1696
49 1710
50 1533
51 1447
52 1412
53 1359
54 1246
55 1217
56 1113
57 1040
58 1023
59 976
60 875
61 891
62 821
63 827
64 758
65 726
66 731
67 663
68 628
69 654
70 592
71 579
72 517
73 493
74 457
75 500
76 438
77 484
78 412
79 407
80 423
81 403
82 387
83 376
84 325
85 325
86 340
87 344
88 297
89 282
90 292
91 256
92 245
93 291
94 222
95 227
96 267
97 220
98 246
99 224
100 217
101 193
102 193
103 176
104 171
105 193
106 186
107 196
108 159
109 173
110 165
111 160
112 147
113 139
114 149
115 146
116 164
117 125
118 118
119 113
120 136
121 124
122 96
123 120
124 114
125 102
126 104
127 95
128 125
129 91
130 101
131 102
132 87
133 74
134 82
135 70
136 88
137 82
138 78
139 81
140 73
141 83
142 78
143 74
144 70
145 63
146 61
147 66
148 79
149 75
150 71
151 51
152 62
153 64
154 64
155 60
156 52
157 44
158 51
159 68
160 58
161 47
162 45
163 45
164 58
165 47
166 39
167 47
168 40
169 42
170 50
171 37
172 35
173 44
174 46
175 31
176 43
177 33
178 42
179 39
180 37
181 30
182 40
183 36
184 30
185 39
186 38
187 37
188 36
189 33
190 27
191 31
192 24
193 22
194 28
195 25
196 34
197 34
198 32
199 26
200 20
201 23
202 28
203 22
204 31
205 30
206 23
207 24
208 20
209 21
210 26
211 31
212 25
213 21
214 22
215 19
216 20
217 13
218 27
219 23
220 15
221 17
222 26
223 22
224 22
225 18
226 20
227 16
228 20
229 11
230 32
231 16
232 22
233 19
234 16
235 24
236 20
237 21
238 13
239 15
240 15
241 15
242 18
243 13
244 14
245 16
246 17
247 19
248 15
249 21
250 18
251 14
252 14
253 8
254 13
255 10
256 10
257 11
258 11
259 13
260 13
261 17
262 25
263 7
264 11
265 4
266 11
267 11
268 10
269 5
270 17
271 17
272 9
273 14
274 11
275 8
276 5
277 11
278 8
279 9
280 7
281 12
282 9
283 7
284 10
285 6
286 16
287 8
288 3
289 9
290 11
291 8
292 13
293 13
294 13
295 11
296 11
297 6
298 6
299 13
300 7
301 8
302 4
303 3
304 5
305 11
306 5
307 4
308 12
309 7
310 9
311 5
312 14
313 10
314 4
315 7
316 7
317 7
318 8
319 10
320 4
321 6
322 6
323 4
324 5
325 8
326 2
327 1
328 8
329 5
330 4
331 8
332 3
333 6
334 7
335 4
336 6
337 5
338 5
339 5
340 9
341 8
342 5
343 2
344 9
345 5
346 2
347 4
348 5
349 2
350 3
351 2
352 5
353 3
354 5
355 5
356 5
357 2
358 2
359 8
360 2
361 6
362 9
363 5
364 4
365 1
366 4
367 6
368 2
369 7
370 3
371 5
372 1
373 1
374 1
375 4
377 5
378 6
379 5
380 7
381 7
382 9
383 4
384 8
385 4
386 6
387 7
388 2
389 2
390 1
391 4
392 7
393 1
394 6
395 5
396 5
397 2
398 4
399 2
400 6
401 4
402 3
403 2
404 6
405 12
406 3
407 3
408 2
409 3
410 4
411 2
412 3
413 2
414 1
415 2
416 1
417 2
418 2
420 1
421 4
422 4
423 3
424 3
425 1
426 7
427 4
428 3
429 1
430 1
431 2
432 4
434 2
435 2
437 2
438 4
439 2
440 1
441 5
442 2
444 3
445 3
446 1
447 4
448 3
449 4
450 2
451 1
452 2
453 2
454 1
455 2
456 4
457 2
459 1
460 6
462 2
463 1
464 1
465 1
466 2
467 4
468 3
470 2
471 2
472 3
473 2
475 2
476 1
477 1
478 2
479 2
481 4
482 2
483 2
484 2
485 2
487 2
488 1
489 3
490 3
491 2
492 1
494 2
495 1
497 1
498 1
499 3
500 2
501 3
502 1
503 2
505 1
506 1
507 2
509 3
510 2
511 1
512 1
513 1
514 3
516 2
517 1
518 1
521 2
522 1
523 2
524 2
528 2
530 1
531 1
532 1
533 2
534 1
536 1
537 2
538 1
539 2
540 2
541 1
543 3
547 1
548 2
549 1
550 2
552 1
553 1
554 1
557 2
558 2
559 1
561 5
562 4
563 2
565 1
566 1
567 1
568 1
569 1
570 2
572 2
573 2
577 1
578 3
581 1
584 2
587 1
590 1
591 2
592 1
593 1
594 1
597 4
598 3
600 1
601 1
605 1
606 1
607 1
608 1
612 1
613 1
614 1
615 1
618 4
619 1
620 1
621 1
623 1
627 1
628 1
629 2
631 2
632 1
633 1
634 1
636 1
637 1
639 1
641 1
642 1
643 1
647 2
648 1
650 2
652 1
654 1
655 1
657 1
658 2
664 1
668 1
670 1
672 2
673 1
676 2
677 1
678 2
679 2
682 1
683 3
685 3
686 1
688 1
691 1
693 1
694 1
696 1
697 1
703 1
704 1
709 2
711 1
713 2
714 1
715 1
716 3
717 2
720 1
727 2
730 1
731 2
732 1
734 1
735 1
741 1
745 2
746 1
753 1
757 1
764 1
765 1
768 1
769 1
770 1
771 1
772 1
773 1
775 2
776 1
778 1
782 1
793 1
794 2
799 1
800 1
801 1
809 1
810 2
812 1
815 2
817 2
827 1
832 1
836 1
841 1
843 1
844 1
849 1
851 1
852 1
859 1
861 4
862 1
865 1
868 1
873 1
874 1
878 1
879 1
880 1
882 1
883 1
884 1
892 1
893 1
896 1
900 2
901 1
902 1
906 1
907 1
920 1
931 1
932 1
934 1
938 1
943 1
945 1
950 1
956 1
967 1
972 1
974 1
979 2
986 2
988 1
1004 1
1009 1
1013 1
1016 1
1031 1
1038 1
1039 1
1053 1
1056 1
1062 1
1063 1
1068 1
1072 2
1084 1
1086 1
1089 1
1110 1
1117 1
1122 1
1129 1
1130 1
1131 1
1139 1
1147 1
1148 1
1157 1
1164 1
1179 1
1187 1
1198 1
1199 1
1219 2
1235 1
1238 1
1260 1
1270 1
1282 1
1284 1
1289 1
1292 1
1296 1
1304 1
1305 1
1312 1
1315 2
1348 2
1350 1
1351 1
1360 1
1363 1
1368 2
1370 1
1385 1
1400 1
1419 1
1420 1
1429 2
1431 1
1450 1
1474 1
1479 1
1485 1
1500 1
1506 1
1520 1
1531 1
1537 1
1546 1
1555 1
1558 1
1567 1
1579 1
1580 1
1588 1
1589 1
1607 1
1627 1
1628 1
1634 1
1635 1
1636 1
1640 1
1642 1
1647 2
1656 1
1675 1
1676 1
1690 1
1728 1
1762 2
1800 1
1818 1
1894 1
1895 1
1909 1
2040 1
2092 1
2120 1
2121 1
2162 1
2181 1
2286 1
2323 1
2337 1
2398 1
2526 1
2641 1
2750 1
2859 1
2932 1
3036 1
3841 1
4364 1
4879 1
6396 1
11269 1
16544 1
55807 1
962139 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.........................._.............................................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]