File Info

Filename
aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/9c5736f9c8abfd82971a210e994225/aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:42:07
                             Started mapping on |	Jun 08 07:44:15
                                    Finished on |	Jun 08 08:46:13
       Mapping speed, Million of reads per hour |	285.72

                          Number of input reads |	295088017
                      Average input read length |	245
                                    UNIQUE READS:
                   Uniquely mapped reads number |	281181707
                        Uniquely mapped reads % |	95.29%
                          Average mapped length |	245.21
                       Number of splices: Total |	311782412
            Number of splices: Annotated (sjdb) |	306411996
                       Number of splices: GT/AG |	308957860
                       Number of splices: GC/AG |	1993052
                       Number of splices: AT/AC |	221325
               Number of splices: Non-canonical |	610175
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.50
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7934830
             % of reads mapped to multiple loci |	2.69%
        Number of reads mapped to too many loci |	407942
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	500663
       % of reads unmapped: too many mismatches |	0.17%
            Number of reads unmapped: too short |	2987877
                 % of reads unmapped: too short |	1.01%
                Number of reads unmapped: other |	321731
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3924911
                            % of chimeric reads |	1.33%