File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2e804044f643db8c90b74e831ac897/.command.log
Size
741 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (aih-tih-sc-027d27-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/eec6ddf2f301c6c4b3fed56b75e071/aih-tih-sc-027d27-R1_B23WHYVLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2e804044f643db8c90b74e831ac897/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2e804044f643db8c90b74e831ac897/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  aih-tih-sc-027d27-R1_B23WHYVLT4_1: vaf_p90=0.995717 -> CONTAMINATED (~0.7%)

Output saved to: aih-tih-sc-027d27-R1_B23WHYVLT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated