File Info

Filename
aih-tih-sc-6284ec-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/5b56ce50bd1a1431617c7c78183596/aih-tih-sc-6284ec-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:29:46
                             Started mapping on |	Jun 08 08:31:29
                                    Finished on |	Jun 08 09:38:37
       Mapping speed, Million of reads per hour |	246.50

                          Number of input reads |	275811681
                      Average input read length |	252
                                    UNIQUE READS:
                   Uniquely mapped reads number |	263520305
                        Uniquely mapped reads % |	95.54%
                          Average mapped length |	252.23
                       Number of splices: Total |	304063064
            Number of splices: Annotated (sjdb) |	300702915
                       Number of splices: GT/AG |	301209209
                       Number of splices: GC/AG |	2018332
                       Number of splices: AT/AC |	222272
               Number of splices: Non-canonical |	613251
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.54
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6992176
             % of reads mapped to multiple loci |	2.54%
        Number of reads mapped to too many loci |	411936
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	445898
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	2558896
                 % of reads unmapped: too short |	0.93%
                Number of reads unmapped: other |	304449
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3418346
                            % of chimeric reads |	1.24%