Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/30e1131cfd7b7a7fc54b6f8c49e8c0/aih-tih-sc-7dd1d5-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/038f81f2dacd5c2d18258fd68d4e94/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/038f81f2dacd5c2d18258fd68d4e94/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 206713725
unpaired = 4360911
MERGED PAIRED END READS = 206713725
MATES PROCESSED = 417788361
TOTAL READS     = 211074636
DISTINCT READS  = 6.59372e+07
DISTINCT COUNTS = 1178
MAX COUNT       = 949780
COUNTS OF 1     = 2.42631e+07
MAX TERMS       = 100
OBSERVED COUNTS (949781)
1	24263072
2	14630160
3	9298024
4	5875751
5	3711118
6	2371579
7	1542815
8	1033477
9	712172
10	505177
11	368321
12	277087
13	212298
14	165070
15	130989
16	106218
17	86130
18	71221
19	59205
20	50063
21	42628
22	36620
23	31510
24	27745
25	24272
26	21598
27	19345
28	17079
29	15251
30	13856
31	12497
32	11370
33	10396
34	9659
35	8699
36	7933
37	7448
38	7006
39	6463
40	5935
41	5433
42	5154
43	4823
44	4484
45	4288
46	3907
47	3769
48	3612
49	3336
50	3086
51	2966
52	2883
53	2704
54	2522
55	2353
56	2315
57	2215
58	2071
59	2035
60	1873
61	1828
62	1638
63	1599
64	1586
65	1588
66	1445
67	1389
68	1407
69	1269
70	1252
71	1141
72	1158
73	1095
74	1044
75	993
76	972
77	980
78	947
79	873
80	838
81	835
82	801
83	759
84	721
85	696
86	752
87	728
88	669
89	654
90	572
91	607
92	567
93	572
94	580
95	530
96	503
97	508
98	502
99	451
100	469
101	452
102	455
103	408
104	448
105	441
106	384
107	415
108	377
109	385
110	361
111	377
112	332
113	353
114	358
115	337
116	308
117	286
118	286
119	295
120	299
121	269
122	273
123	282
124	262
125	276
126	240
127	250
128	228
129	209
130	206
131	238
132	218
133	232
134	220
135	221
136	201
137	181
138	185
139	203
140	194
141	209
142	187
143	183
144	194
145	202
146	162
147	158
148	126
149	147
150	164
151	161
152	152
153	136
154	126
155	140
156	157
157	152
158	146
159	116
160	139
161	128
162	114
163	138
164	124
165	116
166	101
167	115
168	95
169	115
170	94
171	98
172	101
173	99
174	81
175	105
176	92
177	105
178	83
179	91
180	97
181	109
182	92
183	94
184	113
185	92
186	109
187	86
188	98
189	84
190	94
191	80
192	66
193	81
194	70
195	67
196	69
197	74
198	74
199	80
200	54
201	86
202	69
203	47
204	77
205	72
206	60
207	60
208	68
209	76
210	55
211	59
212	46
213	56
214	40
215	58
216	54
217	57
218	42
219	61
220	65
221	49
222	61
223	65
224	46
225	48
226	57
227	45
228	36
229	44
230	48
231	42
232	50
233	56
234	39
235	47
236	39
237	42
238	55
239	49
240	42
241	42
242	41
243	33
244	44
245	44
246	42
247	45
248	32
249	35
250	39
251	43
252	45
253	26
254	36
255	35
256	26
257	19
258	36
259	35
260	26
261	32
262	29
263	25
264	36
265	37
266	35
267	30
268	33
269	32
270	21
271	31
272	34
273	27
274	32
275	28
276	27
277	33
278	31
279	38
280	36
281	25
282	27
283	20
284	26
285	36
286	15
287	25
288	17
289	33
290	17
291	26
292	33
293	23
294	20
295	21
296	21
297	29
298	27
299	29
300	29
301	20
302	27
303	28
304	28
305	23
306	20
307	16
308	15
309	22
310	21
311	26
312	16
313	19
314	20
315	10
316	24
317	21
318	16
319	21
320	11
321	19
322	12
323	18
324	24
325	24
326	14
327	15
328	18
329	12
330	25
331	20
332	20
333	27
334	16
335	22
336	22
337	18
338	17
339	21
340	22
341	16
342	8
343	19
344	17
345	17
346	19
347	12
348	20
349	15
350	15
351	15
352	15
353	9
354	17
355	16
356	17
357	11
358	13
359	20
360	18
361	9
362	13
363	13
364	12
365	18
366	19
367	14
368	12
369	15
370	10
371	12
372	10
373	14
374	7
375	11
376	17
377	15
378	10
379	16
380	6
381	12
382	9
383	11
384	12
385	15
386	11
387	12
388	12
389	15
390	13
391	10
392	13
393	17
394	11
395	7
396	10
397	5
398	10
399	10
400	10
401	12
402	9
403	8
404	11
405	11
406	5
407	13
408	8
409	10
410	12
411	12
412	7
413	9
414	6
415	13
416	15
417	5
418	11
419	8
420	8
421	7
422	7
423	8
424	12
425	9
426	8
427	4
428	9
429	7
430	11
431	5
432	4
433	7
434	6
435	6
436	8
437	6
438	8
439	15
440	9
441	10
442	13
443	10
444	5
445	11
446	10
447	8
448	8
449	5
450	5
451	6
452	12
453	6
454	11
455	6
456	14
457	5
458	5
459	12
460	6
461	7
462	11
463	11
464	9
465	5
466	9
467	6
468	7
469	4
470	9
471	11
472	8
473	8
474	5
475	6
476	4
477	5
478	4
479	4
480	6
481	9
482	5
483	3
484	10
485	6
486	7
487	4
488	6
489	2
490	9
491	2
492	5
493	5
494	8
495	4
496	1
497	8
498	3
499	11
500	4
501	3
502	7
503	5
504	6
505	9
506	8
507	6
508	5
509	2
510	6
511	9
512	6
513	6
514	6
515	7
516	7
517	5
518	5
519	4
520	5
521	5
522	2
523	3
524	1
525	2
526	2
527	2
528	4
529	1
530	2
531	7
532	6
533	4
534	7
535	3
536	8
537	5
538	5
540	3
541	2
542	6
543	3
544	8
545	2
546	5
547	2
548	4
549	10
550	6
551	1
552	2
553	4
554	2
555	6
556	3
557	5
558	3
559	4
560	8
561	5
562	2
563	3
564	4
565	3
567	2
568	3
569	5
570	5
571	6
572	7
573	7
574	8
575	1
576	4
577	5
578	4
579	5
580	3
581	4
582	5
583	4
585	4
586	2
587	5
588	2
589	7
590	1
591	2
592	7
593	3
594	2
595	3
596	1
597	2
598	3
600	2
601	5
602	3
603	4
604	2
605	2
606	5
607	2
608	4
609	4
610	4
611	3
612	3
613	2
614	7
616	6
617	3
618	1
619	3
620	2
621	1
622	1
624	4
625	6
626	3
627	2
628	2
629	3
630	1
631	2
632	6
633	4
634	2
635	3
636	2
637	1
638	1
639	5
640	4
641	6
642	4
643	2
644	2
645	2
646	2
647	3
648	4
649	4
650	6
652	1
653	4
654	3
655	2
656	3
657	3
658	1
660	2
661	8
662	3
663	5
664	4
665	1
666	7
667	1
668	4
669	4
670	2
671	1
674	4
676	4
677	2
678	1
679	1
681	1
682	1
683	1
684	1
685	1
686	1
687	4
688	2
689	4
690	1
691	1
692	2
693	1
694	4
695	6
696	2
697	1
698	2
699	3
700	2
701	7
702	1
703	1
704	3
705	2
706	4
707	4
708	2
709	1
710	1
711	2
712	2
714	2
715	2
716	2
717	3
718	2
719	6
720	2
722	1
723	1
724	2
725	2
726	1
727	3
728	4
729	3
732	2
733	2
735	2
736	3
738	1
739	2
740	1
741	1
743	1
744	1
746	1
747	2
748	3
750	6
751	3
752	2
753	4
754	1
755	2
758	1
760	1
761	1
762	2
763	1
765	3
766	3
767	1
768	1
770	1
771	1
772	3
773	1
774	1
775	1
776	1
777	2
778	3
779	2
780	2
781	3
783	2
785	2
787	1
789	2
790	1
791	1
792	2
793	1
794	1
795	2
796	1
797	1
799	1
800	1
801	1
802	1
805	2
806	1
807	1
808	3
809	2
811	2
812	4
813	1
815	3
817	1
818	2
819	1
821	1
822	2
823	2
824	2
825	2
826	2
827	1
829	3
832	2
833	3
834	2
837	3
840	4
842	1
843	1
844	1
845	1
846	2
847	3
848	1
851	1
852	1
853	2
854	4
856	3
858	1
859	2
860	2
861	2
862	1
863	2
864	1
866	1
867	3
870	2
875	1
876	1
877	4
878	1
879	1
880	1
881	2
882	2
883	3
884	1
885	1
886	1
888	2
890	2
892	2
894	1
896	2
897	1
898	1
899	3
900	1
901	1
902	1
906	1
908	1
910	2
912	1
915	2
922	1
923	2
924	1
925	1
927	1
932	1
934	1
937	1
940	1
942	2
944	1
945	1
946	1
948	1
950	2
952	2
954	1
955	1
958	1
960	2
961	1
962	1
963	1
965	1
966	1
967	2
968	1
969	3
970	1
971	2
974	2
975	1
977	1
978	2
979	2
982	1
983	2
984	1
985	1
987	1
990	2
991	1
994	1
996	1
997	2
998	1
999	2
1000	1
1002	1
1003	1
1006	3
1007	1
1009	2
1010	1
1012	1
1013	2
1014	1
1016	1
1018	1
1022	3
1023	1
1024	2
1025	2
1026	3
1034	1
1039	1
1040	1
1041	1
1044	2
1045	1
1047	1
1048	1
1050	2
1051	1
1053	1
1054	2
1055	1
1056	2
1057	4
1060	1
1061	2
1064	2
1065	1
1067	1
1071	2
1073	1
1074	1
1075	1
1083	1
1085	4
1086	1
1088	1
1089	2
1091	1
1092	1
1093	1
1096	1
1097	1
1105	1
1108	1
1109	2
1110	1
1112	1
1114	1
1116	2
1118	1
1120	1
1121	1
1122	1
1123	3
1126	2
1129	1
1136	1
1138	2
1140	1
1142	1
1147	2
1150	1
1151	1
1153	1
1154	3
1155	1
1158	1
1159	1
1164	1
1166	1
1168	2
1172	1
1176	1
1177	1
1180	1
1182	1
1186	2
1187	1
1189	1
1194	1
1195	1
1196	1
1198	1
1201	1
1204	1
1205	1
1207	1
1224	1
1225	2
1233	1
1235	1
1238	1
1242	1
1245	1
1246	1
1252	2
1253	1
1257	1
1259	1
1263	1
1264	1
1268	1
1272	1
1275	2
1277	2
1286	2
1287	1
1288	2
1290	1
1297	1
1302	1
1307	1
1308	1
1312	1
1313	1
1317	1
1321	1
1325	1
1327	1
1328	2
1337	1
1338	1
1339	1
1340	1
1343	1
1346	1
1348	1
1358	1
1368	2
1379	1
1387	1
1388	1
1394	1
1396	1
1398	1
1400	1
1408	1
1420	1
1423	1
1424	1
1427	1
1429	1
1440	1
1444	1
1451	1
1462	2
1474	2
1478	2
1480	1
1481	1
1488	2
1489	1
1497	1
1499	1
1508	1
1535	1
1536	1
1537	1
1545	1
1551	1
1553	1
1556	1
1558	1
1568	1
1570	1
1576	1
1589	1
1590	1
1595	1
1598	1
1602	1
1605	1
1606	1
1610	1
1611	1
1634	1
1637	1
1641	1
1651	1
1663	1
1666	1
1668	1
1676	1
1683	1
1685	1
1689	1
1696	1
1699	1
1700	1
1709	1
1710	1
1732	1
1739	1
1746	1
1747	1
1760	1
1761	1
1771	1
1788	1
1794	1
1801	1
1804	1
1806	1
1818	1
1820	1
1836	1
1839	1
1857	1
1860	1
1870	1
1879	1
1884	1
1895	1
1896	1
1900	1
1902	1
1912	1
1924	1
1926	1
1934	1
1956	1
1963	1
1991	1
2022	1
2042	1
2046	1
2077	1
2090	1
2091	1
2095	1
2114	1
2122	1
2130	1
2138	1
2167	2
2186	1
2189	1
2208	1
2234	1
2257	1
2369	1
2381	1
2384	1
2396	1
2469	1
2489	1
2558	1
2617	1
2697	2
2778	1
2796	1
2800	1
2816	1
2820	1
2897	1
2905	1
2933	1
3096	1
3194	1
3387	1
3407	1
3583	1
3711	1
3783	1
3892	1
3951	1
4096	1
4773	1
5959	1
6297	1
7059	1
8183	1
12549	1
12674	1
44602	1
949780	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................_...............................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]