Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/30e1131cfd7b7a7fc54b6f8c49e8c0/aih-tih-sc-7dd1d5-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/038f81f2dacd5c2d18258fd68d4e94/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/038f81f2dacd5c2d18258fd68d4e94/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records paired = 206713725 unpaired = 4360911 MERGED PAIRED END READS = 206713725 MATES PROCESSED = 417788361 TOTAL READS = 211074636 DISTINCT READS = 6.59372e+07 DISTINCT COUNTS = 1178 MAX COUNT = 949780 COUNTS OF 1 = 2.42631e+07 MAX TERMS = 100 OBSERVED COUNTS (949781) 1 24263072 2 14630160 3 9298024 4 5875751 5 3711118 6 2371579 7 1542815 8 1033477 9 712172 10 505177 11 368321 12 277087 13 212298 14 165070 15 130989 16 106218 17 86130 18 71221 19 59205 20 50063 21 42628 22 36620 23 31510 24 27745 25 24272 26 21598 27 19345 28 17079 29 15251 30 13856 31 12497 32 11370 33 10396 34 9659 35 8699 36 7933 37 7448 38 7006 39 6463 40 5935 41 5433 42 5154 43 4823 44 4484 45 4288 46 3907 47 3769 48 3612 49 3336 50 3086 51 2966 52 2883 53 2704 54 2522 55 2353 56 2315 57 2215 58 2071 59 2035 60 1873 61 1828 62 1638 63 1599 64 1586 65 1588 66 1445 67 1389 68 1407 69 1269 70 1252 71 1141 72 1158 73 1095 74 1044 75 993 76 972 77 980 78 947 79 873 80 838 81 835 82 801 83 759 84 721 85 696 86 752 87 728 88 669 89 654 90 572 91 607 92 567 93 572 94 580 95 530 96 503 97 508 98 502 99 451 100 469 101 452 102 455 103 408 104 448 105 441 106 384 107 415 108 377 109 385 110 361 111 377 112 332 113 353 114 358 115 337 116 308 117 286 118 286 119 295 120 299 121 269 122 273 123 282 124 262 125 276 126 240 127 250 128 228 129 209 130 206 131 238 132 218 133 232 134 220 135 221 136 201 137 181 138 185 139 203 140 194 141 209 142 187 143 183 144 194 145 202 146 162 147 158 148 126 149 147 150 164 151 161 152 152 153 136 154 126 155 140 156 157 157 152 158 146 159 116 160 139 161 128 162 114 163 138 164 124 165 116 166 101 167 115 168 95 169 115 170 94 171 98 172 101 173 99 174 81 175 105 176 92 177 105 178 83 179 91 180 97 181 109 182 92 183 94 184 113 185 92 186 109 187 86 188 98 189 84 190 94 191 80 192 66 193 81 194 70 195 67 196 69 197 74 198 74 199 80 200 54 201 86 202 69 203 47 204 77 205 72 206 60 207 60 208 68 209 76 210 55 211 59 212 46 213 56 214 40 215 58 216 54 217 57 218 42 219 61 220 65 221 49 222 61 223 65 224 46 225 48 226 57 227 45 228 36 229 44 230 48 231 42 232 50 233 56 234 39 235 47 236 39 237 42 238 55 239 49 240 42 241 42 242 41 243 33 244 44 245 44 246 42 247 45 248 32 249 35 250 39 251 43 252 45 253 26 254 36 255 35 256 26 257 19 258 36 259 35 260 26 261 32 262 29 263 25 264 36 265 37 266 35 267 30 268 33 269 32 270 21 271 31 272 34 273 27 274 32 275 28 276 27 277 33 278 31 279 38 280 36 281 25 282 27 283 20 284 26 285 36 286 15 287 25 288 17 289 33 290 17 291 26 292 33 293 23 294 20 295 21 296 21 297 29 298 27 299 29 300 29 301 20 302 27 303 28 304 28 305 23 306 20 307 16 308 15 309 22 310 21 311 26 312 16 313 19 314 20 315 10 316 24 317 21 318 16 319 21 320 11 321 19 322 12 323 18 324 24 325 24 326 14 327 15 328 18 329 12 330 25 331 20 332 20 333 27 334 16 335 22 336 22 337 18 338 17 339 21 340 22 341 16 342 8 343 19 344 17 345 17 346 19 347 12 348 20 349 15 350 15 351 15 352 15 353 9 354 17 355 16 356 17 357 11 358 13 359 20 360 18 361 9 362 13 363 13 364 12 365 18 366 19 367 14 368 12 369 15 370 10 371 12 372 10 373 14 374 7 375 11 376 17 377 15 378 10 379 16 380 6 381 12 382 9 383 11 384 12 385 15 386 11 387 12 388 12 389 15 390 13 391 10 392 13 393 17 394 11 395 7 396 10 397 5 398 10 399 10 400 10 401 12 402 9 403 8 404 11 405 11 406 5 407 13 408 8 409 10 410 12 411 12 412 7 413 9 414 6 415 13 416 15 417 5 418 11 419 8 420 8 421 7 422 7 423 8 424 12 425 9 426 8 427 4 428 9 429 7 430 11 431 5 432 4 433 7 434 6 435 6 436 8 437 6 438 8 439 15 440 9 441 10 442 13 443 10 444 5 445 11 446 10 447 8 448 8 449 5 450 5 451 6 452 12 453 6 454 11 455 6 456 14 457 5 458 5 459 12 460 6 461 7 462 11 463 11 464 9 465 5 466 9 467 6 468 7 469 4 470 9 471 11 472 8 473 8 474 5 475 6 476 4 477 5 478 4 479 4 480 6 481 9 482 5 483 3 484 10 485 6 486 7 487 4 488 6 489 2 490 9 491 2 492 5 493 5 494 8 495 4 496 1 497 8 498 3 499 11 500 4 501 3 502 7 503 5 504 6 505 9 506 8 507 6 508 5 509 2 510 6 511 9 512 6 513 6 514 6 515 7 516 7 517 5 518 5 519 4 520 5 521 5 522 2 523 3 524 1 525 2 526 2 527 2 528 4 529 1 530 2 531 7 532 6 533 4 534 7 535 3 536 8 537 5 538 5 540 3 541 2 542 6 543 3 544 8 545 2 546 5 547 2 548 4 549 10 550 6 551 1 552 2 553 4 554 2 555 6 556 3 557 5 558 3 559 4 560 8 561 5 562 2 563 3 564 4 565 3 567 2 568 3 569 5 570 5 571 6 572 7 573 7 574 8 575 1 576 4 577 5 578 4 579 5 580 3 581 4 582 5 583 4 585 4 586 2 587 5 588 2 589 7 590 1 591 2 592 7 593 3 594 2 595 3 596 1 597 2 598 3 600 2 601 5 602 3 603 4 604 2 605 2 606 5 607 2 608 4 609 4 610 4 611 3 612 3 613 2 614 7 616 6 617 3 618 1 619 3 620 2 621 1 622 1 624 4 625 6 626 3 627 2 628 2 629 3 630 1 631 2 632 6 633 4 634 2 635 3 636 2 637 1 638 1 639 5 640 4 641 6 642 4 643 2 644 2 645 2 646 2 647 3 648 4 649 4 650 6 652 1 653 4 654 3 655 2 656 3 657 3 658 1 660 2 661 8 662 3 663 5 664 4 665 1 666 7 667 1 668 4 669 4 670 2 671 1 674 4 676 4 677 2 678 1 679 1 681 1 682 1 683 1 684 1 685 1 686 1 687 4 688 2 689 4 690 1 691 1 692 2 693 1 694 4 695 6 696 2 697 1 698 2 699 3 700 2 701 7 702 1 703 1 704 3 705 2 706 4 707 4 708 2 709 1 710 1 711 2 712 2 714 2 715 2 716 2 717 3 718 2 719 6 720 2 722 1 723 1 724 2 725 2 726 1 727 3 728 4 729 3 732 2 733 2 735 2 736 3 738 1 739 2 740 1 741 1 743 1 744 1 746 1 747 2 748 3 750 6 751 3 752 2 753 4 754 1 755 2 758 1 760 1 761 1 762 2 763 1 765 3 766 3 767 1 768 1 770 1 771 1 772 3 773 1 774 1 775 1 776 1 777 2 778 3 779 2 780 2 781 3 783 2 785 2 787 1 789 2 790 1 791 1 792 2 793 1 794 1 795 2 796 1 797 1 799 1 800 1 801 1 802 1 805 2 806 1 807 1 808 3 809 2 811 2 812 4 813 1 815 3 817 1 818 2 819 1 821 1 822 2 823 2 824 2 825 2 826 2 827 1 829 3 832 2 833 3 834 2 837 3 840 4 842 1 843 1 844 1 845 1 846 2 847 3 848 1 851 1 852 1 853 2 854 4 856 3 858 1 859 2 860 2 861 2 862 1 863 2 864 1 866 1 867 3 870 2 875 1 876 1 877 4 878 1 879 1 880 1 881 2 882 2 883 3 884 1 885 1 886 1 888 2 890 2 892 2 894 1 896 2 897 1 898 1 899 3 900 1 901 1 902 1 906 1 908 1 910 2 912 1 915 2 922 1 923 2 924 1 925 1 927 1 932 1 934 1 937 1 940 1 942 2 944 1 945 1 946 1 948 1 950 2 952 2 954 1 955 1 958 1 960 2 961 1 962 1 963 1 965 1 966 1 967 2 968 1 969 3 970 1 971 2 974 2 975 1 977 1 978 2 979 2 982 1 983 2 984 1 985 1 987 1 990 2 991 1 994 1 996 1 997 2 998 1 999 2 1000 1 1002 1 1003 1 1006 3 1007 1 1009 2 1010 1 1012 1 1013 2 1014 1 1016 1 1018 1 1022 3 1023 1 1024 2 1025 2 1026 3 1034 1 1039 1 1040 1 1041 1 1044 2 1045 1 1047 1 1048 1 1050 2 1051 1 1053 1 1054 2 1055 1 1056 2 1057 4 1060 1 1061 2 1064 2 1065 1 1067 1 1071 2 1073 1 1074 1 1075 1 1083 1 1085 4 1086 1 1088 1 1089 2 1091 1 1092 1 1093 1 1096 1 1097 1 1105 1 1108 1 1109 2 1110 1 1112 1 1114 1 1116 2 1118 1 1120 1 1121 1 1122 1 1123 3 1126 2 1129 1 1136 1 1138 2 1140 1 1142 1 1147 2 1150 1 1151 1 1153 1 1154 3 1155 1 1158 1 1159 1 1164 1 1166 1 1168 2 1172 1 1176 1 1177 1 1180 1 1182 1 1186 2 1187 1 1189 1 1194 1 1195 1 1196 1 1198 1 1201 1 1204 1 1205 1 1207 1 1224 1 1225 2 1233 1 1235 1 1238 1 1242 1 1245 1 1246 1 1252 2 1253 1 1257 1 1259 1 1263 1 1264 1 1268 1 1272 1 1275 2 1277 2 1286 2 1287 1 1288 2 1290 1 1297 1 1302 1 1307 1 1308 1 1312 1 1313 1 1317 1 1321 1 1325 1 1327 1 1328 2 1337 1 1338 1 1339 1 1340 1 1343 1 1346 1 1348 1 1358 1 1368 2 1379 1 1387 1 1388 1 1394 1 1396 1 1398 1 1400 1 1408 1 1420 1 1423 1 1424 1 1427 1 1429 1 1440 1 1444 1 1451 1 1462 2 1474 2 1478 2 1480 1 1481 1 1488 2 1489 1 1497 1 1499 1 1508 1 1535 1 1536 1 1537 1 1545 1 1551 1 1553 1 1556 1 1558 1 1568 1 1570 1 1576 1 1589 1 1590 1 1595 1 1598 1 1602 1 1605 1 1606 1 1610 1 1611 1 1634 1 1637 1 1641 1 1651 1 1663 1 1666 1 1668 1 1676 1 1683 1 1685 1 1689 1 1696 1 1699 1 1700 1 1709 1 1710 1 1732 1 1739 1 1746 1 1747 1 1760 1 1761 1 1771 1 1788 1 1794 1 1801 1 1804 1 1806 1 1818 1 1820 1 1836 1 1839 1 1857 1 1860 1 1870 1 1879 1 1884 1 1895 1 1896 1 1900 1 1902 1 1912 1 1924 1 1926 1 1934 1 1956 1 1963 1 1991 1 2022 1 2042 1 2046 1 2077 1 2090 1 2091 1 2095 1 2114 1 2122 1 2130 1 2138 1 2167 2 2186 1 2189 1 2208 1 2234 1 2257 1 2369 1 2381 1 2384 1 2396 1 2469 1 2489 1 2558 1 2617 1 2697 2 2778 1 2796 1 2800 1 2816 1 2820 1 2897 1 2905 1 2933 1 3096 1 3194 1 3387 1 3407 1 3583 1 3711 1 3783 1 3892 1 3951 1 4096 1 4773 1 5959 1 6297 1 7059 1 8183 1 12549 1 12674 1 44602 1 949780 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ........................................_............................... ............................. [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]