Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/9b4784e989937274c95e3ce5e97ec3/aih-tih-sc-762402-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/78b0111d03ffa48152b34b0a40b37a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/78b0111d03ffa48152b34b0a40b37a/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 243000000 records
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Processed 250000000 records
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Processed 290000000 records
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Processed 297000000 records
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Processed 306000000 records
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Processed 310000000 records
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Processed 313000000 records
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Processed 315000000 records
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Processed 323000000 records
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Processed 327000000 records
Processed 328000000 records
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Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
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Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
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Processed 340000000 records
Processed 341000000 records
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Processed 343000000 records
Processed 344000000 records
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Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
Processed 373000000 records
Processed 374000000 records
Processed 375000000 records
Processed 376000000 records
Processed 377000000 records
Processed 378000000 records
Processed 379000000 records
Processed 380000000 records
Processed 381000000 records
Processed 382000000 records
Processed 383000000 records
Processed 384000000 records
Processed 385000000 records
Processed 386000000 records
Processed 387000000 records
Processed 388000000 records
Processed 389000000 records
Processed 390000000 records
Processed 391000000 records
Processed 392000000 records
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Processed 395000000 records
Processed 396000000 records
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Processed 399000000 records
Processed 400000000 records
Processed 401000000 records
Processed 402000000 records
Processed 403000000 records
Processed 404000000 records
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Processed 408000000 records
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Processed 420000000 records
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Processed 422000000 records
paired = 209329608
unpaired = 4004949
MERGED PAIRED END READS = 209329608
MATES PROCESSED = 422664165
TOTAL READS     = 213334557
DISTINCT READS  = 9.27928e+07
DISTINCT COUNTS = 2597
MAX COUNT       = 919209
COUNTS OF 1     = 5.63874e+07
MAX TERMS       = 100
OBSERVED COUNTS (919210)
1	56387367
2	19780909
3	7770069
4	3435329
5	1719235
6	959198
7	586358
8	390339
9	273881
10	202726
11	155350
12	122413
13	99126
14	82192
15	69229
16	58722
17	50267
18	43600
19	38132
20	34041
21	30104
22	26797
23	24285
24	22351
25	20227
26	18401
27	16753
28	15450
29	14280
30	12943
31	12355
32	11457
33	10654
34	10095
35	9414
36	8810
37	8293
38	7855
39	7324
40	7031
41	6567
42	6207
43	6072
44	5851
45	5525
46	5175
47	4875
48	4813
49	4580
50	4345
51	4306
52	3994
53	3803
54	3609
55	3530
56	3383
57	3327
58	3195
59	3009
60	2964
61	2757
62	2748
63	2651
64	2512
65	2504
66	2382
67	2321
68	2284
69	2237
70	2103
71	2034
72	2020
73	1922
74	1918
75	1914
76	1734
77	1682
78	1712
79	1645
80	1590
81	1563
82	1465
83	1488
84	1457
85	1367
86	1463
87	1329
88	1311
89	1277
90	1281
91	1248
92	1198
93	1124
94	1136
95	1073
96	1096
97	1060
98	992
99	1047
100	994
101	1043
102	916
103	969
104	906
105	935
106	873
107	841
108	783
109	826
110	787
111	814
112	760
113	771
114	771
115	734
116	727
117	772
118	722
119	686
120	650
121	651
122	702
123	658
124	702
125	632
126	613
127	626
128	583
129	557
130	548
131	610
132	521
133	577
134	570
135	588
136	513
137	540
138	491
139	486
140	517
141	461
142	448
143	483
144	460
145	463
146	436
147	438
148	434
149	432
150	414
151	448
152	387
153	436
154	402
155	361
156	389
157	401
158	350
159	375
160	378
161	394
162	342
163	326
164	370
165	351
166	335
167	347
168	354
169	287
170	320
171	339
172	299
173	328
174	327
175	312
176	283
177	299
178	276
179	284
180	302
181	280
182	262
183	273
184	275
185	265
186	267
187	290
188	257
189	279
190	231
191	251
192	250
193	257
194	254
195	250
196	236
197	239
198	223
199	253
200	205
201	234
202	242
203	219
204	243
205	200
206	236
207	224
208	207
209	226
210	174
211	184
212	191
213	155
214	204
215	189
216	190
217	205
218	202
219	200
220	176
221	176
222	210
223	163
224	145
225	161
226	190
227	196
228	165
229	172
230	171
231	190
232	162
233	187
234	152
235	158
236	166
237	161
238	163
239	164
240	141
241	147
242	152
243	135
244	165
245	162
246	164
247	165
248	120
249	158
250	142
251	134
252	137
253	141
254	127
255	114
256	140
257	119
258	130
259	123
260	143
261	130
262	133
263	129
264	118
265	138
266	129
267	115
268	104
269	113
270	132
271	115
272	130
273	117
274	106
275	124
276	139
277	89
278	107
279	90
280	108
281	107
282	102
283	107
284	101
285	88
286	100
287	117
288	116
289	104
290	97
291	98
292	96
293	95
294	83
295	95
296	97
297	92
298	92
299	97
300	91
301	94
302	99
303	90
304	102
305	81
306	84
307	98
308	102
309	81
310	75
311	82
312	94
313	101
314	92
315	87
316	95
317	72
318	89
319	96
320	63
321	81
322	81
323	90
324	88
325	89
326	81
327	72
328	81
329	79
330	74
331	51
332	62
333	81
334	81
335	57
336	74
337	69
338	77
339	81
340	89
341	66
342	73
343	67
344	78
345	70
346	60
347	66
348	68
349	62
350	65
351	53
352	64
353	57
354	58
355	69
356	76
357	56
358	63
359	67
360	65
361	54
362	65
363	61
364	54
365	63
366	52
367	65
368	44
369	55
370	64
371	55
372	52
373	59
374	70
375	47
376	41
377	65
378	44
379	53
380	66
381	62
382	62
383	56
384	59
385	52
386	49
387	43
388	41
389	63
390	60
391	60
392	56
393	56
394	53
395	52
396	46
397	48
398	55
399	42
400	59
401	53
402	47
403	47
404	47
405	52
406	44
407	41
408	43
409	37
410	33
411	55
412	38
413	43
414	49
415	48
416	53
417	44
418	45
419	59
420	63
421	41
422	39
423	41
424	37
425	34
426	42
427	46
428	37
429	23
430	39
431	28
432	46
433	42
434	37
435	47
436	55
437	37
438	37
439	49
440	35
441	41
442	35
443	49
444	35
445	42
446	50
447	43
448	33
449	31
450	45
451	48
452	34
453	29
454	33
455	36
456	33
457	43
458	26
459	34
460	39
461	32
462	31
463	38
464	37
465	33
466	28
467	31
468	34
469	36
470	25
471	42
472	34
473	35
474	37
475	40
476	39
477	36
478	24
479	32
480	27
481	34
482	26
483	25
484	32
485	22
486	22
487	34
488	31
489	33
490	33
491	32
492	32
493	34
494	34
495	25
496	33
497	27
498	32
499	29
500	30
501	20
502	31
503	31
504	28
505	28
506	21
507	27
508	15
509	30
510	39
511	26
512	25
513	15
514	33
515	33
516	25
517	21
518	25
519	27
520	25
521	37
522	33
523	24
524	22
525	24
526	33
527	25
528	35
529	18
530	24
531	25
532	30
533	28
534	22
535	34
536	26
537	13
538	34
539	38
540	19
541	22
542	29
543	26
544	25
545	36
546	27
547	19
548	24
549	24
550	32
551	19
552	10
553	14
554	23
555	19
556	23
557	16
558	21
559	23
560	26
561	28
562	25
563	14
564	22
565	23
566	25
567	23
568	14
569	26
570	26
571	20
572	23
573	16
574	16
575	18
576	15
577	25
578	27
579	21
580	31
581	17
582	20
583	17
584	20
585	18
586	18
587	17
588	15
589	15
590	16
591	24
592	21
593	19
594	21
595	22
596	16
597	23
598	17
599	16
600	13
601	20
602	21
603	22
604	16
605	17
606	19
607	26
608	15
609	21
610	14
611	10
612	15
613	20
614	20
615	16
616	9
617	17
618	21
619	17
620	17
621	17
622	16
623	21
624	13
625	18
626	23
627	16
628	9
629	13
630	20
631	15
632	14
633	26
634	13
635	21
636	10
637	18
638	16
639	12
640	19
641	9
642	14
643	20
644	12
645	18
646	11
647	20
648	13
649	16
650	15
651	22
652	17
653	16
654	11
655	19
656	8
657	12
658	7
659	17
660	14
661	10
662	14
663	19
664	16
665	17
666	21
667	6
668	15
669	11
670	14
671	13
672	13
673	7
674	8
675	17
676	14
677	16
678	10
679	23
680	9
681	13
682	12
683	15
684	16
685	12
686	9
687	15
688	21
689	11
690	15
691	9
692	10
693	8
694	10
695	17
696	12
697	12
698	12
699	10
700	7
701	11
702	17
703	15
704	11
705	15
706	18
707	9
708	19
709	7
710	16
711	8
712	12
713	7
714	17
715	13
716	4
717	12
718	18
719	13
720	7
721	11
722	7
723	13
724	10
725	14
726	8
727	6
728	15
729	16
730	14
731	7
732	14
733	15
734	12
735	9
736	10
737	12
738	14
739	10
740	9
741	11
742	10
743	10
744	15
745	15
746	9
747	12
748	8
749	9
750	12
751	10
752	10
753	15
754	19
755	16
756	6
757	8
758	16
759	8
760	17
761	11
762	3
763	4
764	12
765	14
766	6
767	11
768	10
769	13
770	9
771	8
772	10
773	8
774	7
775	5
776	10
777	19
778	13
779	6
780	6
781	12
782	14
783	13
784	6
785	7
786	19
787	10
788	8
789	11
790	7
791	17
792	9
793	10
794	15
795	10
796	7
797	13
798	5
799	14
800	13
801	6
802	10
803	7
804	14
805	10
806	5
807	8
808	9
809	11
810	5
811	7
812	15
813	9
814	7
815	7
816	15
817	8
818	9
819	7
820	6
821	5
822	8
823	12
824	4
825	12
826	11
827	7
828	7
829	10
830	9
831	13
832	8
833	10
834	10
835	7
836	10
837	5
838	11
839	12
840	2
841	7
842	7
843	5
844	4
845	8
846	4
847	8
848	3
849	11
850	9
851	6
852	6
853	5
854	7
855	7
856	10
857	8
858	9
859	9
860	13
861	8
862	9
863	8
864	10
865	7
866	7
867	5
868	8
869	7
870	7
871	11
872	7
873	5
874	12
875	8
876	3
877	6
878	6
879	11
880	6
881	5
882	7
883	6
884	9
885	10
886	15
887	5
888	10
889	11
890	7
891	2
892	6
893	12
894	8
895	3
896	6
897	9
898	7
899	7
900	6
901	6
902	2
903	9
904	8
905	10
906	6
907	3
908	6
909	8
910	9
911	5
912	6
913	10
914	10
915	2
916	12
917	7
918	8
919	8
920	2
921	5
922	12
923	9
924	11
925	7
926	4
927	5
928	7
929	4
930	6
931	3
932	6
933	2
934	12
935	6
936	3
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3459	1
3461	1
3466	1
3467	1
3474	1
3476	1
3479	1
3498	1
3500	1
3507	1
3516	1
3519	1
3520	1
3525	1
3527	1
3531	1
3537	1
3544	1
3549	3
3550	1
3561	2
3571	1
3575	1
3577	1
3599	1
3614	1
3619	1
3625	1
3626	1
3636	1
3642	1
3647	1
3661	2
3663	1
3666	1
3668	1
3686	1
3692	1
3713	1
3715	1
3716	1
3729	1
3731	1
3734	2
3740	1
3748	1
3752	1
3775	1
3802	1
3807	1
3810	1
3811	1
3813	1
3818	1
3821	1
3833	1
3837	1
3838	1
3855	1
3863	1
3867	1
3868	1
3876	2
3879	1
3885	1
3895	1
3915	1
3917	1
3928	1
3930	1
3935	1
3946	1
3954	1
3956	1
3965	1
3973	1
3977	1
3980	1
3997	1
4003	1
4006	1
4018	1
4029	1
4049	1
4050	1
4054	1
4056	1
4079	1
4085	1
4089	1
4097	1
4110	1
4124	2
4127	1
4129	1
4156	1
4159	1
4161	1
4184	1
4192	1
4198	1
4203	1
4205	1
4229	1
4239	1
4244	1
4253	1
4272	1
4278	1
4301	1
4304	1
4334	1
4336	1
4357	1
4397	1
4400	1
4410	1
4422	1
4434	1
4471	2
4478	1
4517	1
4536	1
4548	1
4557	1
4558	1
4562	1
4597	1
4607	1
4612	1
4619	1
4638	1
4647	1
4658	1
4676	1
4681	1
4720	1
4731	1
4734	1
4735	1
4751	1
4759	1
4787	1
4794	1
4810	1
4849	2
4854	1
4870	1
4872	1
4916	1
4935	1
4968	1
4983	1
5001	1
5004	1
5010	1
5021	1
5036	1
5042	1
5066	1
5068	1
5073	1
5084	1
5091	1
5174	1
5258	1
5272	1
5302	1
5327	1
5356	1
5362	1
5370	2
5400	1
5413	1
5489	1
5498	1
5499	1
5504	1
5549	1
5560	1
5566	1
5569	1
5574	1
5580	1
5582	1
5585	1
5653	1
5718	1
5719	1
5746	1
5759	1
5772	1
5781	1
5805	1
5920	1
5943	1
5977	1
6032	1
6086	1
6093	1
6112	1
6116	1
6166	1
6170	1
6188	1
6212	1
6224	1
6285	1
6295	1
6306	1
6316	1
6366	1
6374	1
6497	1
6586	1
6597	1
6599	1
6610	1
6659	1
6737	1
6762	1
6785	1
6867	1
6884	1
6893	1
6902	1
6909	1
7147	1
7210	1
7273	1
7291	1
7325	1
7410	1
7517	1
7674	1
7679	1
7956	1
8113	1
8240	1
8428	1
8443	1
8490	1
8513	1
8527	1
8631	1
8652	1
9207	1
9357	1
9397	1
9436	1
9668	1
9767	1
9806	1
9839	1
10099	1
10103	1
10117	1
10140	1
10152	1
10157	1
10361	1
10473	1
10548	1
10597	1
11004	1
11030	1
11079	1
11402	1
11665	1
11750	1
11864	1
12651	1
13063	1
15593	1
16054	1
20307	1
21200	1
24249	1
36648	1
51780	1
919209	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.................................................................._.....
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]