Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/33fa86ebfc6d824e5e47a35d41557d/aih-tih-sc-8b9375-R1_B23WHYVLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/0c933767d2c18a71dbe237a98c938a/aih-tih-sc-8b9375-R1_B23WHYVLT4_1.Chimeric.out.junction
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/96d848784697b6ff285a048c914660/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/96d848784697b6ff285a048c914660/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/33fa86ebfc6d824e5e47a35d41557d/aih-tih-sc-8b9375-R1_B23WHYVLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.ieoa81AGLX/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.ieoa81AGLX/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.ieoa81AGLX/./star-fusion.preliminary
-sample contains 294652094 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.ieoa81AGLX/ctat_genome_lib_build_dir  -J /tmp/nxf.ieoa81AGLX/aih-tih-sc-8b9375-R1_B23WHYVLT4_1.Chimeric.out.junction  -O /tmp/nxf.ieoa81AGLX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.ieoa81AGLX/aih-tih-sc-8b9375-R1_B23WHYVLT4_1.Chimeric.out.junction