Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/c1dbe5c3f86518158c7f1ed9f4e4b5/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/ccd51611e2dcee844799394b2d733c/aih-tih-sc-e9e54b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/c1dbe5c3f86518158c7f1ed9f4e4b5/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-e9e54b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-e9e54b-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-e9e54b-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:07:07.388 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:07:07 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-e9e54b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-e9e54b-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-e9e54b-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:07:07 GMT 2026] Executing as ?@nf-c5c1dbe5c3f86518158c7f1ed9f4e4b5-a7f79-f952k on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:07:07 MarkDuplicates Start of doWork freeMemory: 105828144; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:07:07 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:07:07 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,320,489
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 2918 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:1,815,819
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 5795 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,456,544
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 8677 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,862,929
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 11942 as yet unmatched pairs. 515 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,256,125
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 14614 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:15,729,881
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 17041 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:16,961,069
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 19480 as yet unmatched pairs. 102 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,597,018
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 22317 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,842,882
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 25082 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,661,225
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 28446 as yet unmatched pairs. 791 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:24,654,950
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 30212 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:26,774,531
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 32904 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:28,518,277
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 35383 as yet unmatched pairs. 29 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:31,908,833
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 38196 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:33,024,548
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 40652 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:36,289,327
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 43430 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:39,385,879
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 46292 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:41,580,871
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 48634 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:43,606,950
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 52037 as yet unmatched pairs. 575 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:46,023,870
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 54150 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:52,360,995
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 56872 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:58,782,550
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 62473 as yet unmatched pairs. 2875 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:68,488,920
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 62001 as yet unmatched pairs. 19 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:90,937,586
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 64285 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:108,154,999
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 66474 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:110,340,542
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 68915 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:113,940,657
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 71777 as yet unmatched pairs. 370 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:116,614,088
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 73944 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:120,452,234
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 76452 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:146,106,593
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 77888 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:148,590,877
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 79168 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,156
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 81206 as yet unmatched pairs. 724 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:150,648,540
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 83323 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:151,838,409
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 85887 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,609
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 94534 as yet unmatched pairs. 6280 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,586,199
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 90792 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:155,192,020
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 94074 as yet unmatched pairs. 1066 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:155,962,151
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 95435 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,529
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 100724 as yet unmatched pairs. 1949 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:159,016,560
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 101653 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:161,509,828
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 104311 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:169,124,945
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 108078 as yet unmatched pairs. 1657 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:173,972,550
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 108748 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:183,127,254
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 111337 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:186,347,291
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 114443 as yet unmatched pairs. 820 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:201,484,638
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 116873 as yet unmatched pairs. 837 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:203,802,027
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 119074 as yet unmatched pairs. 588 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:206,021,060
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 121061 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:209,173,064
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 123512 as yet unmatched pairs. 1 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:221,739,534
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 126081 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:225,862,454
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 128902 as yet unmatched pairs. 446 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:228,394,942
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 131146 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:234,609,389
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 134662 as yet unmatched pairs. 291 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,659
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 138128 as yet unmatched pairs. 1418 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 3s. Last read position: chr2:8,818,718
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 139783 as yet unmatched pairs. 139486 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:20,037,412
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 142753 as yet unmatched pairs. 142448 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:24,834,926
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 145274 as yet unmatched pairs. 144968 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:27,369,539
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 147750 as yet unmatched pairs. 147439 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:32,433,639
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 150675 as yet unmatched pairs. 150354 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 225405 as yet unmatched pairs. 146931 records in RAM.
INFO 2026-06-08 09:08:56 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:08:56 MarkDuplicates Tracking 851921 as yet unmatched pairs. 115834 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,404
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 1342634 as yet unmatched pairs. 91946 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 1353340 as yet unmatched pairs. 91551 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:33,524,434
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 1457610 as yet unmatched pairs. 86308 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:42,261,136
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 1456487 as yet unmatched pairs. 85176 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:43,231,100
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 1452138 as yet unmatched pairs. 80823 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:47,373,983
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 1451132 as yet unmatched pairs. 79817 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:54,646,355
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 1447229 as yet unmatched pairs. 75914 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:61,188,582
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 1444169 as yet unmatched pairs. 72853 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:69,465,472
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 1442098 as yet unmatched pairs. 70776 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:74,047,176
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 1439545 as yet unmatched pairs. 68223 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:84,824,121
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 1436570 as yet unmatched pairs. 65240 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:85,663,629
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 1437390 as yet unmatched pairs. 66059 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:86,986,262
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 1431392 as yet unmatched pairs. 60052 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:96,326,708
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 1429466 as yet unmatched pairs. 58125 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:100,990,780
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 1427273 as yet unmatched pairs. 55926 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:108,719,535
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 1425145 as yet unmatched pairs. 53788 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:109,836,151
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 1423611 as yet unmatched pairs. 52251 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:112,390,988
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 1422113 as yet unmatched pairs. 50744 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:119,368,184
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 1420449 as yet unmatched pairs. 49079 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:128,318,135
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 1417733 as yet unmatched pairs. 46355 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:144,513,699
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 1415369 as yet unmatched pairs. 43990 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:159,854,926
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 1412933 as yet unmatched pairs. 41547 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:172,465,591
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 1410665 as yet unmatched pairs. 39279 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:178,569,205
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 1407865 as yet unmatched pairs. 36477 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:188,993,417
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 1406031 as yet unmatched pairs. 34643 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:196,329,596
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 1403019 as yet unmatched pairs. 31629 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:201,285,272
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 1400586 as yet unmatched pairs. 29192 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:207,577,610
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 1398371 as yet unmatched pairs. 26970 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,311
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 1397470 as yet unmatched pairs. 26066 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,713
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 1397332 as yet unmatched pairs. 25925 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,211
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 1393049 as yet unmatched pairs. 21637 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:217,847,994
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 1388858 as yet unmatched pairs. 17444 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:218,699,092
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 1386110 as yet unmatched pairs. 14694 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:219,608,233
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 1382925 as yet unmatched pairs. 11508 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:230,878,352
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 1380725 as yet unmatched pairs. 9290 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:233,281,133
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 1378250 as yet unmatched pairs. 6807 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:238,189,953
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 1375336 as yet unmatched pairs. 3888 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:241,417,963
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 1372485 as yet unmatched pairs. 1030 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr3:9,825,864
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 1369918 as yet unmatched pairs. 67904 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:12,936,275
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 1367436 as yet unmatched pairs. 65419 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:23,919,269
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 1364834 as yet unmatched pairs. 62811 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:37,134,640
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 1362295 as yet unmatched pairs. 60252 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:40,462,138
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 1359847 as yet unmatched pairs. 57804 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:45,110,730
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 1357337 as yet unmatched pairs. 55290 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:47,123,113
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 1354944 as yet unmatched pairs. 52896 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:48,419,275
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 1352405 as yet unmatched pairs. 50351 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:49,016,207
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 1349351 as yet unmatched pairs. 47297 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:49,699,672
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 1346729 as yet unmatched pairs. 44665 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr3:50,642,299
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 1343534 as yet unmatched pairs. 41470 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:52,487,971
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 1341103 as yet unmatched pairs. 39029 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:57,571,754
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 1338073 as yet unmatched pairs. 35996 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:66,500,201
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 1335958 as yet unmatched pairs. 33870 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:100,732,667
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 1333229 as yet unmatched pairs. 31130 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:113,657,064
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 1330743 as yet unmatched pairs. 28632 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:122,701,181
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 1328388 as yet unmatched pairs. 26276 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:127,017,545
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 1325443 as yet unmatched pairs. 23329 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:129,570,903
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 1322665 as yet unmatched pairs. 20544 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:139,366,607
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 1320116 as yet unmatched pairs. 17993 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:150,546,052
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 1317665 as yet unmatched pairs. 15542 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:169,804,160
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 1314757 as yet unmatched pairs. 12623 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:183,041,648
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 1312500 as yet unmatched pairs. 10353 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:184,355,493
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 1309671 as yet unmatched pairs. 7516 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,305
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 1308482 as yet unmatched pairs. 6321 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,911
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 1305464 as yet unmatched pairs. 3302 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:196,885,524
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 1303604 as yet unmatched pairs. 1439 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr4:1,023,864
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 1300738 as yet unmatched pairs. 33412 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr4:2,693,746
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 1297849 as yet unmatched pairs. 30520 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr4:7,772,872
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 1295126 as yet unmatched pairs. 27791 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:22,435,398
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 1292242 as yet unmatched pairs. 24907 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,252
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 1291961 as yet unmatched pairs. 24626 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:41,638,930
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 1287187 as yet unmatched pairs. 19847 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:57,023,329
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 1284724 as yet unmatched pairs. 17382 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:75,800,389
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 1282367 as yet unmatched pairs. 15023 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:84,801,747
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 1279780 as yet unmatched pairs. 12435 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:102,263,152
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 1277527 as yet unmatched pairs. 10166 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:121,696,591
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 1275073 as yet unmatched pairs. 7695 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:145,137,840
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 1272928 as yet unmatched pairs. 5546 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:153,704,788
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 1270740 as yet unmatched pairs. 3354 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:185,734,073
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 1268240 as yet unmatched pairs. 847 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr5:5,460,897
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 1265583 as yet unmatched pairs. 68638 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr5:14,369,464
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 1263861 as yet unmatched pairs. 66915 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr5:16,506,034
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 1259876 as yet unmatched pairs. 62928 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:38,932,983
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 1257559 as yet unmatched pairs. 60606 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr5:57,247,144
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 1255212 as yet unmatched pairs. 58254 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr5:70,944,740
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 1253565 as yet unmatched pairs. 56605 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:78,240,879
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 1251276 as yet unmatched pairs. 54310 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:95,736,904
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 1248607 as yet unmatched pairs. 51628 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:115,221,915
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 1246407 as yet unmatched pairs. 49422 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:128,178,667
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 1243799 as yet unmatched pairs. 46812 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:134,578,711
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 1240949 as yet unmatched pairs. 43954 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:138,187,156
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 1238336 as yet unmatched pairs. 41339 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:139,389,655
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 1235899 as yet unmatched pairs. 38900 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:141,201,309
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 1233272 as yet unmatched pairs. 36215 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:141,864,990
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 1231422 as yet unmatched pairs. 34363 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:150,001,011
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 1228427 as yet unmatched pairs. 31349 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,145
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 1232989 as yet unmatched pairs. 35910 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,283
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 1235299 as yet unmatched pairs. 38219 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,284
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 1240316 as yet unmatched pairs. 43235 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:150,648,989
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 1217015 as yet unmatched pairs. 19933 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr5:154,793,712
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 1214435 as yet unmatched pairs. 17347 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:169,700,102
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 1211571 as yet unmatched pairs. 14481 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,734
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 1213825 as yet unmatched pairs. 16733 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:176,968,743
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 1207093 as yet unmatched pairs. 9996 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:178,207,205
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 1204096 as yet unmatched pairs. 6999 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:179,820,936
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 1204253 as yet unmatched pairs. 7154 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:180,324,730
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 1198670 as yet unmatched pairs. 1564 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr6:2,770,194
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 1195734 as yet unmatched pairs. 99421 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr6:7,231,168
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 1193283 as yet unmatched pairs. 96965 records in RAM.
INFO 2026-06-08 09:11:57 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:7,883,149
INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 1190872 as yet unmatched pairs. 94553 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr6:17,760,715
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 1187678 as yet unmatched pairs. 91346 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,532
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 1186411 as yet unmatched pairs. 90063 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:27,139,342
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 1182768 as yet unmatched pairs. 86416 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:29,725,494
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 1180470 as yet unmatched pairs. 84118 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,603
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 1187255 as yet unmatched pairs. 90899 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr6:30,652,637
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 1175356 as yet unmatched pairs. 78995 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:30,932,035
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 1172644 as yet unmatched pairs. 76283 records in RAM.
INFO 2026-06-08 09:12:09 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,353
INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 1173582 as yet unmatched pairs. 77214 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,133
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 1167857 as yet unmatched pairs. 71484 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr6:31,732,264
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 1166080 as yet unmatched pairs. 69706 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:31,869,616
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 1163195 as yet unmatched pairs. 66820 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:32,062,295
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 1160829 as yet unmatched pairs. 64452 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:32,554,728
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 1159128 as yet unmatched pairs. 62750 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:33,085,012
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 1155728 as yet unmatched pairs. 59338 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:33,412,247
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 1153487 as yet unmatched pairs. 57082 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:34,246,667
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 1150117 as yet unmatched pairs. 53712 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:36,225,276
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 1147618 as yet unmatched pairs. 51205 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr6:41,684,797
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 1144760 as yet unmatched pairs. 48342 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:43,072,831
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 1142186 as yet unmatched pairs. 45767 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:43,771,138
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 1141097 as yet unmatched pairs. 44669 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:47,253,256
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 1136532 as yet unmatched pairs. 40103 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:56,605,969
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 1134126 as yet unmatched pairs. 37687 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:75,660,657
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 1131968 as yet unmatched pairs. 35526 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:87,530,799
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 1129689 as yet unmatched pairs. 33236 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:100,805,770
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 1126923 as yet unmatched pairs. 30469 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:109,444,262
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 1124635 as yet unmatched pairs. 28178 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:117,341,501
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 1121795 as yet unmatched pairs. 25328 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:129,353,182
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 1119239 as yet unmatched pairs. 22767 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:135,192,424
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 1117301 as yet unmatched pairs. 20829 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:138,262,764
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 1114586 as yet unmatched pairs. 18114 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:144,438,777
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 1111747 as yet unmatched pairs. 15275 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:151,348,710
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 1108903 as yet unmatched pairs. 12430 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:157,921,572
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 1106615 as yet unmatched pairs. 10136 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:158,770,876
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 1104077 as yet unmatched pairs. 7597 records in RAM.
INFO 2026-06-08 09:12:53 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:160,075,944
INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 1100620 as yet unmatched pairs. 4140 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:168,489,704
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 1097724 as yet unmatched pairs. 1243 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr7:1,482,547
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 1095032 as yet unmatched pairs. 82566 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr7:5,063,846
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 1091204 as yet unmatched pairs. 78732 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:5,387,723
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 1088554 as yet unmatched pairs. 76075 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,353
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 1093993 as yet unmatched pairs. 81513 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:5,623,070
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 1082604 as yet unmatched pairs. 70120 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:20,003,060
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 1080015 as yet unmatched pairs. 67514 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:29,566,424
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 1077515 as yet unmatched pairs. 65014 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:40,094,135
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 1074899 as yet unmatched pairs. 62390 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:44,700,221
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 1072313 as yet unmatched pairs. 59804 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:55,151,360
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 1070452 as yet unmatched pairs. 57940 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr7:67,286,030
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 1066923 as yet unmatched pairs. 54403 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:73,179,199
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 1065333 as yet unmatched pairs. 52809 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:74,051,974
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 1063370 as yet unmatched pairs. 50843 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:75,320,745
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 1061195 as yet unmatched pairs. 48650 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,778
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 1060336 as yet unmatched pairs. 47790 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:77,940,643
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 1057278 as yet unmatched pairs. 44732 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:92,128,981
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 1055136 as yet unmatched pairs. 42586 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:98,310,540
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 1052630 as yet unmatched pairs. 40078 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,024,204
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 1050018 as yet unmatched pairs. 37465 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:100,576,280
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 1047322 as yet unmatched pairs. 34765 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,644
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 1044722 as yet unmatched pairs. 32164 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr7:100,995,683
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 1044843 as yet unmatched pairs. 32284 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,369
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 1043858 as yet unmatched pairs. 31299 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,870
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 1042712 as yet unmatched pairs. 30153 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,059
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 1042136 as yet unmatched pairs. 29577 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,294
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 1041392 as yet unmatched pairs. 28833 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:102,342,154
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 1038390 as yet unmatched pairs. 25831 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,612
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 1038169 as yet unmatched pairs. 25609 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:107,924,282
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 1035621 as yet unmatched pairs. 23061 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:117,504,280
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 1033674 as yet unmatched pairs. 21108 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,938
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 1031379 as yet unmatched pairs. 18812 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:132,885,662
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 1028203 as yet unmatched pairs. 15630 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:138,861,418
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 1025848 as yet unmatched pairs. 13273 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:141,601,262
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 1023282 as yet unmatched pairs. 10707 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:144,250,766
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 1021302 as yet unmatched pairs. 8722 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:149,557,755
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 1019206 as yet unmatched pairs. 6626 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:151,086,880
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 1016325 as yet unmatched pairs. 3733 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:156,836,846
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 1013494 as yet unmatched pairs. 898 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,660
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 1013140 as yet unmatched pairs. 72256 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr8:22,162,593
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 1011258 as yet unmatched pairs. 70372 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr8:22,614,190
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 1005940 as yet unmatched pairs. 65051 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:27,505,137
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 1002784 as yet unmatched pairs. 61891 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr8:37,697,892
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 1001323 as yet unmatched pairs. 60414 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr8:38,757,341
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 997912 as yet unmatched pairs. 56997 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr8:42,305,244
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 994452 as yet unmatched pairs. 53536 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,750
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 993623 as yet unmatched pairs. 52706 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr8:70,123,802
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 989532 as yet unmatched pairs. 48608 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 64s. Last read position: chr8:86,435,659
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 987276 as yet unmatched pairs. 46351 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr8:98,044,995
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 985852 as yet unmatched pairs. 44921 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,489
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 986089 as yet unmatched pairs. 45156 records in RAM.
INFO 2026-06-08 09:15:19 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr8:116,658,834
INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 980230 as yet unmatched pairs. 39292 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,489
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 981656 as yet unmatched pairs. 40708 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:132,811,052
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 974834 as yet unmatched pairs. 33884 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,275,088
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 971681 as yet unmatched pairs. 30728 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,791,848
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 968694 as yet unmatched pairs. 27738 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,434
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 966968 as yet unmatched pairs. 26012 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,801
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 966116 as yet unmatched pairs. 25160 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,004
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 967428 as yet unmatched pairs. 26472 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,767
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 968310 as yet unmatched pairs. 27354 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,991
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 966699 as yet unmatched pairs. 25742 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,920
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 960343 as yet unmatched pairs. 19386 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,179
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 960038 as yet unmatched pairs. 19081 records in RAM.
INFO 2026-06-08 09:15:35 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,291
INFO 2026-06-08 09:15:35 MarkDuplicates Tracking 959091 as yet unmatched pairs. 18134 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,870,864
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 957742 as yet unmatched pairs. 16783 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,916
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 954197 as yet unmatched pairs. 13235 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,704
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 950963 as yet unmatched pairs. 10000 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:144,239,678
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 946780 as yet unmatched pairs. 5812 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:144,464,538
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 943651 as yet unmatched pairs. 2679 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:712,398
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 940642 as yet unmatched pairs. 56126 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,095
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 940467 as yet unmatched pairs. 55946 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:33,264,266
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 936505 as yet unmatched pairs. 51970 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr9:35,399,425
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 932744 as yet unmatched pairs. 48208 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:37,588,892
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 930050 as yet unmatched pairs. 45493 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:70,170,534
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 927953 as yet unmatched pairs. 43385 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:86,282,400
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 925361 as yet unmatched pairs. 40790 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:93,262,033
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 922999 as yet unmatched pairs. 38424 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:97,487,316
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 919946 as yet unmatched pairs. 35370 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr9:109,091,081
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 917365 as yet unmatched pairs. 32783 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:114,209,674
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 914811 as yet unmatched pairs. 30228 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:121,177,174
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 912137 as yet unmatched pairs. 27553 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:125,657,714
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 909311 as yet unmatched pairs. 24715 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:128,177,707
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 906488 as yet unmatched pairs. 21891 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:128,947,090
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 903549 as yet unmatched pairs. 18949 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:131,127,522
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 901172 as yet unmatched pairs. 16569 records in RAM.
INFO 2026-06-08 09:16:09 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:133,019,528
INFO 2026-06-08 09:16:09 MarkDuplicates Tracking 898328 as yet unmatched pairs. 13718 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:134,700,063
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 895836 as yet unmatched pairs. 11219 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,207
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 892780 as yet unmatched pairs. 8160 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:136,916,612
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 889667 as yet unmatched pairs. 5045 records in RAM.
INFO 2026-06-08 09:16:16 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:137,267,324
INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 886464 as yet unmatched pairs. 1839 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr10:5,099,355
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 883552 as yet unmatched pairs. 43031 records in RAM.
INFO 2026-06-08 09:16:20 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr10:15,248,698
INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 880824 as yet unmatched pairs. 40301 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr10:25,025,113
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 878376 as yet unmatched pairs. 37850 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr10:32,019,868
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 878873 as yet unmatched pairs. 38346 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:32,926,045
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 874730 as yet unmatched pairs. 34202 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,793
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 873133 as yet unmatched pairs. 32603 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:51,153,164
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 870412 as yet unmatched pairs. 29877 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:69,103,876
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 868278 as yet unmatched pairs. 27736 records in RAM.
INFO 2026-06-08 09:16:31 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:73,675,310
INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 865620 as yet unmatched pairs. 25071 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:79,277,260
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 863306 as yet unmatched pairs. 22753 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:79,614,032
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 863332 as yet unmatched pairs. 22779 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:87,366,219
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 859517 as yet unmatched pairs. 18963 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr10:95,866,294
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 856735 as yet unmatched pairs. 16180 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:100,348,162
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 854008 as yet unmatched pairs. 13452 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:102,401,216
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 851546 as yet unmatched pairs. 10989 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:111,004,719
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 848756 as yet unmatched pairs. 8195 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:119,042,021
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 846926 as yet unmatched pairs. 6364 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:122,592,456
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 844556 as yet unmatched pairs. 3992 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:129,649,030
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 842304 as yet unmatched pairs. 1739 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 3s. Last read position: chr11:314,273
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 842296 as yet unmatched pairs. 89708 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:430,094
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 837361 as yet unmatched pairs. 84772 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr11:822,567
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 833771 as yet unmatched pairs. 81181 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,621
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 831133 as yet unmatched pairs. 78543 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:2,390,411
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 828903 as yet unmatched pairs. 76310 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:6,548,704
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 825697 as yet unmatched pairs. 73103 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:10,502,875
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 822887 as yet unmatched pairs. 70293 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:17,134,879
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 820535 as yet unmatched pairs. 67937 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr11:34,053,129
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 818351 as yet unmatched pairs. 65749 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:45,971,269
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 815370 as yet unmatched pairs. 62768 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:47,286,433
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 812743 as yet unmatched pairs. 60141 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:57,614,444
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 810760 as yet unmatched pairs. 58156 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:60,934,598
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 807548 as yet unmatched pairs. 54943 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:62,519,088
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 805383 as yet unmatched pairs. 52773 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,756
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 804204 as yet unmatched pairs. 51594 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:63,753,072
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 800518 as yet unmatched pairs. 47908 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:64,321,628
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 797236 as yet unmatched pairs. 44625 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:65,111,523
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 794586 as yet unmatched pairs. 41975 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr11:65,585,416
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 791291 as yet unmatched pairs. 38671 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:65,856,200
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 788374 as yet unmatched pairs. 35754 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:66,688,721
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 785517 as yet unmatched pairs. 32895 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:67,584,705
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 783966 as yet unmatched pairs. 31344 records in RAM.
INFO 2026-06-08 09:17:25 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,469
INFO 2026-06-08 09:17:25 MarkDuplicates Tracking 779875 as yet unmatched pairs. 27253 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:72,003,950
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 777458 as yet unmatched pairs. 24834 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:72,816,804
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 774253 as yet unmatched pairs. 21628 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:75,815,453
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 771525 as yet unmatched pairs. 18897 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:86,808,686
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 768934 as yet unmatched pairs. 16301 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:102,223,598
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 766387 as yet unmatched pairs. 13752 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:114,064,178
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 763916 as yet unmatched pairs. 11277 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:118,488,622
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 761442 as yet unmatched pairs. 8796 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:119,134,251
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 758706 as yet unmatched pairs. 6059 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:124,987,847
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 756018 as yet unmatched pairs. 3370 records in RAM.
INFO 2026-06-08 09:17:41 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:130,209,677
INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 753520 as yet unmatched pairs. 870 records in RAM.
INFO 2026-06-08 09:17:43 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr12:2,493,364
INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 750997 as yet unmatched pairs. 84028 records in RAM.
INFO 2026-06-08 09:17:45 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr12:6,355,304
INFO 2026-06-08 09:17:45 MarkDuplicates Tracking 748528 as yet unmatched pairs. 81558 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:6,769,972
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 745735 as yet unmatched pairs. 78764 records in RAM.
INFO 2026-06-08 09:17:48 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr12:7,141,352
INFO 2026-06-08 09:17:48 MarkDuplicates Tracking 743089 as yet unmatched pairs. 76117 records in RAM.
INFO 2026-06-08 09:17:50 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:10,701,283
INFO 2026-06-08 09:17:50 MarkDuplicates Tracking 741283 as yet unmatched pairs. 74311 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:13,544,408
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 738421 as yet unmatched pairs. 71448 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:25,268,378
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 736014 as yet unmatched pairs. 69040 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:40,313,987
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 733560 as yet unmatched pairs. 66579 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:48,783,191
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 731464 as yet unmatched pairs. 64482 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,830
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 729295 as yet unmatched pairs. 62312 records in RAM.
INFO 2026-06-08 09:18:00 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr12:49,990,221
INFO 2026-06-08 09:18:00 MarkDuplicates Tracking 726576 as yet unmatched pairs. 59592 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr12:52,054,712
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 726778 as yet unmatched pairs. 59793 records in RAM.
INFO 2026-06-08 09:18:03 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,320
INFO 2026-06-08 09:18:03 MarkDuplicates Tracking 722750 as yet unmatched pairs. 55761 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:53,461,039
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 720043 as yet unmatched pairs. 53052 records in RAM.
INFO 2026-06-08 09:18:06 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:54,347,807
INFO 2026-06-08 09:18:06 MarkDuplicates Tracking 717002 as yet unmatched pairs. 50011 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:56,101,921
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 714483 as yet unmatched pairs. 47483 records in RAM.
INFO 2026-06-08 09:18:09 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:56,349,598
INFO 2026-06-08 09:18:09 MarkDuplicates Tracking 712277 as yet unmatched pairs. 45276 records in RAM.
INFO 2026-06-08 09:18:11 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:57,037,069
INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 709784 as yet unmatched pairs. 42783 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:57,104,491
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 712967 as yet unmatched pairs. 45966 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:57,196,174
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 705253 as yet unmatched pairs. 38250 records in RAM.
INFO 2026-06-08 09:18:16 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:57,715,791
INFO 2026-06-08 09:18:16 MarkDuplicates Tracking 701995 as yet unmatched pairs. 34992 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:67,658,379
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 699656 as yet unmatched pairs. 32652 records in RAM.
INFO 2026-06-08 09:18:19 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:71,663,305
INFO 2026-06-08 09:18:19 MarkDuplicates Tracking 697269 as yet unmatched pairs. 30262 records in RAM.
INFO 2026-06-08 09:18:20 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:92,884,261
INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 694809 as yet unmatched pairs. 27802 records in RAM.
INFO 2026-06-08 09:18:22 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:101,920,121
INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 692406 as yet unmatched pairs. 25393 records in RAM.
INFO 2026-06-08 09:18:24 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:108,788,092
INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 690389 as yet unmatched pairs. 23364 records in RAM.
INFO 2026-06-08 09:18:26 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr12:111,803,903
INFO 2026-06-08 09:18:26 MarkDuplicates Tracking 687417 as yet unmatched pairs. 20392 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:113,332,746
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 684873 as yet unmatched pairs. 17848 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:120,157,995
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 682549 as yet unmatched pairs. 15521 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:121,439,963
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 679862 as yet unmatched pairs. 12832 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:122,508,396
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 677159 as yet unmatched pairs. 10128 records in RAM.
INFO 2026-06-08 09:18:33 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:124,340,081
INFO 2026-06-08 09:18:33 MarkDuplicates Tracking 674718 as yet unmatched pairs. 7685 records in RAM.
INFO 2026-06-08 09:18:35 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:130,991,013
INFO 2026-06-08 09:18:35 MarkDuplicates Tracking 671811 as yet unmatched pairs. 4776 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:132,583,553
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 668737 as yet unmatched pairs. 1698 records in RAM.
INFO 2026-06-08 09:18:38 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr13:20,059,525
INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 668379 as yet unmatched pairs. 27315 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr13:25,331,459
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 663918 as yet unmatched pairs. 22851 records in RAM.
INFO 2026-06-08 09:18:41 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr13:30,642,692
INFO 2026-06-08 09:18:41 MarkDuplicates Tracking 661358 as yet unmatched pairs. 20288 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr13:41,653,697
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 658814 as yet unmatched pairs. 17744 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr13:46,372,109
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 657397 as yet unmatched pairs. 16327 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr13:71,866,235
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 654015 as yet unmatched pairs. 12943 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr13:79,405,711
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 651678 as yet unmatched pairs. 10606 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr13:102,629,588
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 648912 as yet unmatched pairs. 7832 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr13:110,307,896
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 645966 as yet unmatched pairs. 4884 records in RAM.
INFO 2026-06-08 09:18:53 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr13:113,178,190
INFO 2026-06-08 09:18:53 MarkDuplicates Tracking 642955 as yet unmatched pairs. 1871 records in RAM.
INFO 2026-06-08 09:18:56 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr14:21,074,971
INFO 2026-06-08 09:18:56 MarkDuplicates Tracking 640193 as yet unmatched pairs. 47252 records in RAM.
INFO 2026-06-08 09:18:58 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr14:23,079,807
INFO 2026-06-08 09:18:58 MarkDuplicates Tracking 637668 as yet unmatched pairs. 44723 records in RAM.
INFO 2026-06-08 09:18:59 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr14:24,311,169
INFO 2026-06-08 09:18:59 MarkDuplicates Tracking 634796 as yet unmatched pairs. 41850 records in RAM.
INFO 2026-06-08 09:19:01 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr14:37,591,660
INFO 2026-06-08 09:19:01 MarkDuplicates Tracking 632180 as yet unmatched pairs. 39232 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr14:54,432,117
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 630007 as yet unmatched pairs. 37058 records in RAM.
INFO 2026-06-08 09:19:04 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr14:64,159,373
INFO 2026-06-08 09:19:04 MarkDuplicates Tracking 627597 as yet unmatched pairs. 34637 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr14:68,885,444
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 625866 as yet unmatched pairs. 32904 records in RAM.
INFO 2026-06-08 09:19:07 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr14:74,300,177
INFO 2026-06-08 09:19:07 MarkDuplicates Tracking 622515 as yet unmatched pairs. 29552 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,958
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 621396 as yet unmatched pairs. 28433 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr14:91,458,765
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 617432 as yet unmatched pairs. 24460 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr14:99,176,056
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 614899 as yet unmatched pairs. 21923 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr14:102,251,967
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 612120 as yet unmatched pairs. 19127 records in RAM.
INFO 2026-06-08 09:19:14 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:104,773,884
INFO 2026-06-08 09:19:14 MarkDuplicates Tracking 609167 as yet unmatched pairs. 16170 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,086
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 606171 as yet unmatched pairs. 13173 records in RAM.
INFO 2026-06-08 09:19:17 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,811
INFO 2026-06-08 09:19:17 MarkDuplicates Tracking 610692 as yet unmatched pairs. 17694 records in RAM.
INFO 2026-06-08 09:19:19 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,050
INFO 2026-06-08 09:19:19 MarkDuplicates Tracking 602309 as yet unmatched pairs. 9311 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,523
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 612312 as yet unmatched pairs. 19314 records in RAM.
INFO 2026-06-08 09:19:22 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,062
INFO 2026-06-08 09:19:22 MarkDuplicates Tracking 605171 as yet unmatched pairs. 12173 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,650
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 605653 as yet unmatched pairs. 12655 records in RAM.
INFO 2026-06-08 09:19:26 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr15:22,554,491
INFO 2026-06-08 09:19:26 MarkDuplicates Tracking 593029 as yet unmatched pairs. 41062 records in RAM.
INFO 2026-06-08 09:19:27 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr15:30,407,423
INFO 2026-06-08 09:19:27 MarkDuplicates Tracking 590750 as yet unmatched pairs. 38783 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr15:36,613,427
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 588788 as yet unmatched pairs. 36820 records in RAM.
INFO 2026-06-08 09:19:30 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr15:41,358,170
INFO 2026-06-08 09:19:30 MarkDuplicates Tracking 586167 as yet unmatched pairs. 34197 records in RAM.
INFO 2026-06-08 09:19:32 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr15:42,693,361
INFO 2026-06-08 09:19:32 MarkDuplicates Tracking 583629 as yet unmatched pairs. 31654 records in RAM.
INFO 2026-06-08 09:19:34 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr15:43,813,109
INFO 2026-06-08 09:19:34 MarkDuplicates Tracking 581225 as yet unmatched pairs. 29250 records in RAM.
INFO 2026-06-08 09:19:35 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr15:51,383,819
INFO 2026-06-08 09:19:35 MarkDuplicates Tracking 578674 as yet unmatched pairs. 26692 records in RAM.
INFO 2026-06-08 09:19:37 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr15:59,138,315
INFO 2026-06-08 09:19:37 MarkDuplicates Tracking 576488 as yet unmatched pairs. 24506 records in RAM.
INFO 2026-06-08 09:19:38 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr15:63,588,976
INFO 2026-06-08 09:19:38 MarkDuplicates Tracking 573889 as yet unmatched pairs. 21906 records in RAM.
INFO 2026-06-08 09:19:40 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,152
INFO 2026-06-08 09:19:40 MarkDuplicates Tracking 572541 as yet unmatched pairs. 20558 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr15:72,210,386
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 569013 as yet unmatched pairs. 17027 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr15:74,044,714
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 565854 as yet unmatched pairs. 13867 records in RAM.
INFO 2026-06-08 09:19:44 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:75,689,016
INFO 2026-06-08 09:19:44 MarkDuplicates Tracking 563286 as yet unmatched pairs. 11298 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr15:81,299,674
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 560655 as yet unmatched pairs. 8667 records in RAM.
INFO 2026-06-08 09:19:47 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr15:85,244,836
INFO 2026-06-08 09:19:47 MarkDuplicates Tracking 558875 as yet unmatched pairs. 6884 records in RAM.
INFO 2026-06-08 09:19:48 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr15:90,067,611
INFO 2026-06-08 09:19:48 MarkDuplicates Tracking 556654 as yet unmatched pairs. 4663 records in RAM.
INFO 2026-06-08 09:19:50 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:93,024,426
INFO 2026-06-08 09:19:50 MarkDuplicates Tracking 554018 as yet unmatched pairs. 2026 records in RAM.
INFO 2026-06-08 09:19:52 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr16:100,372
INFO 2026-06-08 09:19:52 MarkDuplicates Tracking 551507 as yet unmatched pairs. 103616 records in RAM.
INFO 2026-06-08 09:19:53 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:650,569
INFO 2026-06-08 09:19:53 MarkDuplicates Tracking 548043 as yet unmatched pairs. 100151 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr16:1,385,288
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 545016 as yet unmatched pairs. 97123 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:1,974,257
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 541306 as yet unmatched pairs. 93413 records in RAM.
INFO 2026-06-08 09:19:58 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr16:2,116,007
INFO 2026-06-08 09:19:58 MarkDuplicates Tracking 538251 as yet unmatched pairs. 90357 records in RAM.
INFO 2026-06-08 09:20:00 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:2,756,461
INFO 2026-06-08 09:20:00 MarkDuplicates Tracking 537038 as yet unmatched pairs. 89144 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr16:2,765,366
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 534375 as yet unmatched pairs. 86475 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,770,919
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 530434 as yet unmatched pairs. 82528 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr16:3,608,422
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 527440 as yet unmatched pairs. 79531 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:4,673,591
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 525040 as yet unmatched pairs. 77131 records in RAM.
INFO 2026-06-08 09:20:08 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:10,903,859
INFO 2026-06-08 09:20:08 MarkDuplicates Tracking 522183 as yet unmatched pairs. 74273 records in RAM.
INFO 2026-06-08 09:20:10 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:14,552,021
INFO 2026-06-08 09:20:10 MarkDuplicates Tracking 519885 as yet unmatched pairs. 71974 records in RAM.
INFO 2026-06-08 09:20:11 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:14,989,314
INFO 2026-06-08 09:20:11 MarkDuplicates Tracking 518948 as yet unmatched pairs. 71034 records in RAM.
INFO 2026-06-08 09:20:12 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:16,114,884
INFO 2026-06-08 09:20:12 MarkDuplicates Tracking 517127 as yet unmatched pairs. 69207 records in RAM.
INFO 2026-06-08 09:20:14 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:16,357,150
INFO 2026-06-08 09:20:14 MarkDuplicates Tracking 516060 as yet unmatched pairs. 68140 records in RAM.
INFO 2026-06-08 09:20:15 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:18,358,187
INFO 2026-06-08 09:20:15 MarkDuplicates Tracking 515182 as yet unmatched pairs. 67260 records in RAM.
INFO 2026-06-08 09:20:16 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:18,834,803
INFO 2026-06-08 09:20:16 MarkDuplicates Tracking 513506 as yet unmatched pairs. 65583 records in RAM.
INFO 2026-06-08 09:20:17 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,397
INFO 2026-06-08 09:20:17 MarkDuplicates Tracking 512021 as yet unmatched pairs. 64097 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:21,449,656
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 511197 as yet unmatched pairs. 63273 records in RAM.
INFO 2026-06-08 09:20:20 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,315
INFO 2026-06-08 09:20:20 MarkDuplicates Tracking 509945 as yet unmatched pairs. 62020 records in RAM.
INFO 2026-06-08 09:20:21 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:22,475,025
INFO 2026-06-08 09:20:21 MarkDuplicates Tracking 509489 as yet unmatched pairs. 61564 records in RAM.
INFO 2026-06-08 09:20:22 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,519
INFO 2026-06-08 09:20:22 MarkDuplicates Tracking 509447 as yet unmatched pairs. 61522 records in RAM.
INFO 2026-06-08 09:20:23 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:23,692,003
INFO 2026-06-08 09:20:23 MarkDuplicates Tracking 507278 as yet unmatched pairs. 59351 records in RAM.
INFO 2026-06-08 09:20:25 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:28,383,116
INFO 2026-06-08 09:20:25 MarkDuplicates Tracking 505087 as yet unmatched pairs. 57159 records in RAM.
INFO 2026-06-08 09:20:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:28,826,291
INFO 2026-06-08 09:20:27 MarkDuplicates Tracking 503119 as yet unmatched pairs. 55184 records in RAM.
INFO 2026-06-08 09:20:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr16:29,382,604
INFO 2026-06-08 09:20:29 MarkDuplicates Tracking 501223 as yet unmatched pairs. 53287 records in RAM.
INFO 2026-06-08 09:20:30 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,298
INFO 2026-06-08 09:20:30 MarkDuplicates Tracking 501081 as yet unmatched pairs. 53145 records in RAM.
INFO 2026-06-08 09:20:31 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:29,819,668
INFO 2026-06-08 09:20:31 MarkDuplicates Tracking 498584 as yet unmatched pairs. 50648 records in RAM.
INFO 2026-06-08 09:20:33 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,190
INFO 2026-06-08 09:20:33 MarkDuplicates Tracking 496250 as yet unmatched pairs. 48313 records in RAM.
INFO 2026-06-08 09:20:34 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,706
INFO 2026-06-08 09:20:34 MarkDuplicates Tracking 494185 as yet unmatched pairs. 46248 records in RAM.
INFO 2026-06-08 09:20:35 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:30,665,045
INFO 2026-06-08 09:20:35 MarkDuplicates Tracking 492395 as yet unmatched pairs. 44458 records in RAM.
INFO 2026-06-08 09:20:37 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:30,954,010
INFO 2026-06-08 09:20:37 MarkDuplicates Tracking 489590 as yet unmatched pairs. 41650 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,356
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 488595 as yet unmatched pairs. 40655 records in RAM.
INFO 2026-06-08 09:20:40 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:50,308,373
INFO 2026-06-08 09:20:40 MarkDuplicates Tracking 484238 as yet unmatched pairs. 36297 records in RAM.
INFO 2026-06-08 09:20:42 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:56,467,124
INFO 2026-06-08 09:20:42 MarkDuplicates Tracking 481349 as yet unmatched pairs. 33405 records in RAM.
INFO 2026-06-08 09:20:43 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:57,651,384
INFO 2026-06-08 09:20:43 MarkDuplicates Tracking 479451 as yet unmatched pairs. 31502 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:66,935,602
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 476215 as yet unmatched pairs. 28249 records in RAM.
INFO 2026-06-08 09:20:46 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:67,727,783
INFO 2026-06-08 09:20:46 MarkDuplicates Tracking 473121 as yet unmatched pairs. 25154 records in RAM.
INFO 2026-06-08 09:20:49 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr16:68,829,652
INFO 2026-06-08 09:20:49 MarkDuplicates Tracking 471961 as yet unmatched pairs. 23993 records in RAM.
INFO 2026-06-08 09:20:51 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:70,251,059
INFO 2026-06-08 09:20:51 MarkDuplicates Tracking 468064 as yet unmatched pairs. 20083 records in RAM.
INFO 2026-06-08 09:20:52 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:72,097,726
INFO 2026-06-08 09:20:52 MarkDuplicates Tracking 465297 as yet unmatched pairs. 17316 records in RAM.
INFO 2026-06-08 09:20:53 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:75,447,569
INFO 2026-06-08 09:20:53 MarkDuplicates Tracking 462821 as yet unmatched pairs. 14840 records in RAM.
INFO 2026-06-08 09:20:55 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:84,745,446
INFO 2026-06-08 09:20:55 MarkDuplicates Tracking 459982 as yet unmatched pairs. 12001 records in RAM.
INFO 2026-06-08 09:20:56 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:88,534,016
INFO 2026-06-08 09:20:56 MarkDuplicates Tracking 456813 as yet unmatched pairs. 8829 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:89,196,038
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 454096 as yet unmatched pairs. 6111 records in RAM.
INFO 2026-06-08 09:20:59 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:89,636,604
INFO 2026-06-08 09:20:59 MarkDuplicates Tracking 451110 as yet unmatched pairs. 3123 records in RAM.
INFO 2026-06-08 09:21:02 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr17:745,967
INFO 2026-06-08 09:21:02 MarkDuplicates Tracking 447897 as yet unmatched pairs. 115262 records in RAM.
INFO 2026-06-08 09:21:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:1,647,849
INFO 2026-06-08 09:21:04 MarkDuplicates Tracking 444894 as yet unmatched pairs. 112258 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:2,701,472
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 442204 as yet unmatched pairs. 109567 records in RAM.
INFO 2026-06-08 09:21:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr17:4,720,444
INFO 2026-06-08 09:21:07 MarkDuplicates Tracking 439432 as yet unmatched pairs. 106795 records in RAM.
INFO 2026-06-08 09:21:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:5,346,907
INFO 2026-06-08 09:21:09 MarkDuplicates Tracking 436427 as yet unmatched pairs. 103788 records in RAM.
INFO 2026-06-08 09:21:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,214
INFO 2026-06-08 09:21:11 MarkDuplicates Tracking 434982 as yet unmatched pairs. 102342 records in RAM.
INFO 2026-06-08 09:21:12 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:7,575,139
INFO 2026-06-08 09:21:12 MarkDuplicates Tracking 431660 as yet unmatched pairs. 99020 records in RAM.
INFO 2026-06-08 09:21:14 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:8,039,175
INFO 2026-06-08 09:21:14 MarkDuplicates Tracking 428807 as yet unmatched pairs. 96166 records in RAM.
INFO 2026-06-08 09:21:15 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:15,437,771
INFO 2026-06-08 09:21:15 MarkDuplicates Tracking 426274 as yet unmatched pairs. 93632 records in RAM.
INFO 2026-06-08 09:21:17 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:17,173,939
INFO 2026-06-08 09:21:17 MarkDuplicates Tracking 424037 as yet unmatched pairs. 91395 records in RAM.
INFO 2026-06-08 09:21:19 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr17:18,978,219
INFO 2026-06-08 09:21:19 MarkDuplicates Tracking 420929 as yet unmatched pairs. 88287 records in RAM.
INFO 2026-06-08 09:21:20 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:28,610,560
INFO 2026-06-08 09:21:20 MarkDuplicates Tracking 418743 as yet unmatched pairs. 86094 records in RAM.
INFO 2026-06-08 09:21:22 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr17:29,542,609
INFO 2026-06-08 09:21:22 MarkDuplicates Tracking 416058 as yet unmatched pairs. 83409 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:32,659,315
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 413888 as yet unmatched pairs. 81238 records in RAM.
INFO 2026-06-08 09:21:25 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:36,586,173
INFO 2026-06-08 09:21:25 MarkDuplicates Tracking 411200 as yet unmatched pairs. 78550 records in RAM.
INFO 2026-06-08 09:21:26 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:38,724,925
INFO 2026-06-08 09:21:26 MarkDuplicates Tracking 409120 as yet unmatched pairs. 76469 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,038
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 408382 as yet unmatched pairs. 75731 records in RAM.
INFO 2026-06-08 09:21:29 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,461
INFO 2026-06-08 09:21:29 MarkDuplicates Tracking 405345 as yet unmatched pairs. 72694 records in RAM.
INFO 2026-06-08 09:21:31 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:40,487,106
INFO 2026-06-08 09:21:31 MarkDuplicates Tracking 402159 as yet unmatched pairs. 69507 records in RAM.
INFO 2026-06-08 09:21:32 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:42,022,587
INFO 2026-06-08 09:21:32 MarkDuplicates Tracking 398608 as yet unmatched pairs. 65956 records in RAM.
INFO 2026-06-08 09:21:34 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:42,798,159
INFO 2026-06-08 09:21:34 MarkDuplicates Tracking 396034 as yet unmatched pairs. 63382 records in RAM.
INFO 2026-06-08 09:21:36 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr17:43,769,616
INFO 2026-06-08 09:21:36 MarkDuplicates Tracking 393601 as yet unmatched pairs. 60949 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:45,132,343
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 390851 as yet unmatched pairs. 58199 records in RAM.
INFO 2026-06-08 09:21:39 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:46,514,645
INFO 2026-06-08 09:21:39 MarkDuplicates Tracking 388715 as yet unmatched pairs. 56062 records in RAM.
INFO 2026-06-08 09:21:41 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:48,550,525
INFO 2026-06-08 09:21:41 MarkDuplicates Tracking 386971 as yet unmatched pairs. 54318 records in RAM.
INFO 2026-06-08 09:21:42 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,891
INFO 2026-06-08 09:21:42 MarkDuplicates Tracking 385980 as yet unmatched pairs. 53327 records in RAM.
INFO 2026-06-08 09:21:44 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,915
INFO 2026-06-08 09:21:44 MarkDuplicates Tracking 386082 as yet unmatched pairs. 53429 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,189
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 386871 as yet unmatched pairs. 54201 records in RAM.
INFO 2026-06-08 09:21:47 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,675,435
INFO 2026-06-08 09:21:47 MarkDuplicates Tracking 375564 as yet unmatched pairs. 42887 records in RAM.
INFO 2026-06-08 09:21:48 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:58,005,458
INFO 2026-06-08 09:21:48 MarkDuplicates Tracking 373097 as yet unmatched pairs. 40420 records in RAM.
INFO 2026-06-08 09:21:50 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:58,508,703
INFO 2026-06-08 09:21:50 MarkDuplicates Tracking 369904 as yet unmatched pairs. 37219 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr17:61,867,595
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 367368 as yet unmatched pairs. 34681 records in RAM.
INFO 2026-06-08 09:21:54 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:64,500,682
INFO 2026-06-08 09:21:54 MarkDuplicates Tracking 365237 as yet unmatched pairs. 32550 records in RAM.
INFO 2026-06-08 09:21:55 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:67,910,927
INFO 2026-06-08 09:21:55 MarkDuplicates Tracking 362564 as yet unmatched pairs. 29877 records in RAM.
INFO 2026-06-08 09:21:57 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:72,124,311
INFO 2026-06-08 09:21:57 MarkDuplicates Tracking 360119 as yet unmatched pairs. 27431 records in RAM.
INFO 2026-06-08 09:21:58 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:75,501,468
INFO 2026-06-08 09:21:58 MarkDuplicates Tracking 357478 as yet unmatched pairs. 24790 records in RAM.
INFO 2026-06-08 09:22:00 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:75,748,869
INFO 2026-06-08 09:22:00 MarkDuplicates Tracking 355557 as yet unmatched pairs. 22869 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:76,083,732
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 351318 as yet unmatched pairs. 18630 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 58s. Last read position: chr17:78,125,726
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 348336 as yet unmatched pairs. 15648 records in RAM.
INFO 2026-06-08 09:24:07 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 67s. Last read position: chr17:79,944,908
INFO 2026-06-08 09:24:07 MarkDuplicates Tracking 345912 as yet unmatched pairs. 13221 records in RAM.
INFO 2026-06-08 09:24:09 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:80,383,059
INFO 2026-06-08 09:24:09 MarkDuplicates Tracking 343018 as yet unmatched pairs. 10327 records in RAM.
INFO 2026-06-08 09:24:10 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:81,559,310
INFO 2026-06-08 09:24:10 MarkDuplicates Tracking 340535 as yet unmatched pairs. 7844 records in RAM.
INFO 2026-06-08 09:24:12 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr17:82,010,807
INFO 2026-06-08 09:24:12 MarkDuplicates Tracking 338299 as yet unmatched pairs. 5608 records in RAM.
INFO 2026-06-08 09:24:14 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,444,102
INFO 2026-06-08 09:24:14 MarkDuplicates Tracking 334247 as yet unmatched pairs. 1555 records in RAM.
INFO 2026-06-08 09:24:15 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr18:9,936,160
INFO 2026-06-08 09:24:15 MarkDuplicates Tracking 331319 as yet unmatched pairs. 9975 records in RAM.
INFO 2026-06-08 09:24:17 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr18:31,498,257
INFO 2026-06-08 09:24:17 MarkDuplicates Tracking 328922 as yet unmatched pairs. 7569 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr18:49,936,273
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 326564 as yet unmatched pairs. 5211 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr18:62,830,198
INFO 2026-06-08 09:24:21 MarkDuplicates Tracking 323619 as yet unmatched pairs. 2262 records in RAM.
INFO 2026-06-08 09:24:23 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 2s. Last read position: chr19:581,363
INFO 2026-06-08 09:24:23 MarkDuplicates Tracking 320955 as yet unmatched pairs. 135990 records in RAM.
INFO 2026-06-08 09:24:25 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr19:1,010,883
INFO 2026-06-08 09:24:25 MarkDuplicates Tracking 318319 as yet unmatched pairs. 133352 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr19:1,269,375
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 315732 as yet unmatched pairs. 130764 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr19:1,828,492
INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 311309 as yet unmatched pairs. 126339 records in RAM.
INFO 2026-06-08 09:24:29 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr19:2,339,921
INFO 2026-06-08 09:24:29 MarkDuplicates Tracking 308521 as yet unmatched pairs. 123550 records in RAM.
INFO 2026-06-08 09:24:31 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr19:3,730,038
INFO 2026-06-08 09:24:31 MarkDuplicates Tracking 304870 as yet unmatched pairs. 119897 records in RAM.
INFO 2026-06-08 09:24:33 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:4,817,529
INFO 2026-06-08 09:24:33 MarkDuplicates Tracking 301879 as yet unmatched pairs. 116905 records in RAM.
INFO 2026-06-08 09:24:34 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr19:5,866,736
INFO 2026-06-08 09:24:34 MarkDuplicates Tracking 299107 as yet unmatched pairs. 114133 records in RAM.
INFO 2026-06-08 09:24:36 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr19:6,755,075
INFO 2026-06-08 09:24:36 MarkDuplicates Tracking 296546 as yet unmatched pairs. 111572 records in RAM.
INFO 2026-06-08 09:24:38 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr19:7,967,564
INFO 2026-06-08 09:24:38 MarkDuplicates Tracking 293271 as yet unmatched pairs. 108296 records in RAM.
INFO 2026-06-08 09:24:40 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr19:10,142,101
INFO 2026-06-08 09:24:40 MarkDuplicates Tracking 290152 as yet unmatched pairs. 105175 records in RAM.
INFO 2026-06-08 09:24:41 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr19:10,777,135
INFO 2026-06-08 09:24:41 MarkDuplicates Tracking 287636 as yet unmatched pairs. 102657 records in RAM.
INFO 2026-06-08 09:24:43 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr19:11,342,947
INFO 2026-06-08 09:24:43 MarkDuplicates Tracking 284562 as yet unmatched pairs. 99583 records in RAM.
INFO 2026-06-08 09:24:45 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:12,745,386
INFO 2026-06-08 09:24:45 MarkDuplicates Tracking 281658 as yet unmatched pairs. 96679 records in RAM.
INFO 2026-06-08 09:24:46 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr19:13,759,154
INFO 2026-06-08 09:24:46 MarkDuplicates Tracking 278629 as yet unmatched pairs. 93648 records in RAM.
INFO 2026-06-08 09:24:48 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,636
INFO 2026-06-08 09:24:48 MarkDuplicates Tracking 276363 as yet unmatched pairs. 91382 records in RAM.
INFO 2026-06-08 09:24:49 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:15,243,467
INFO 2026-06-08 09:24:49 MarkDuplicates Tracking 273664 as yet unmatched pairs. 88682 records in RAM.
INFO 2026-06-08 09:24:51 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr19:15,652,602
INFO 2026-06-08 09:24:51 MarkDuplicates Tracking 270414 as yet unmatched pairs. 85430 records in RAM.
INFO 2026-06-08 09:24:53 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 2s. Last read position: chr19:17,218,361
INFO 2026-06-08 09:24:53 MarkDuplicates Tracking 267228 as yet unmatched pairs. 82244 records in RAM.
INFO 2026-06-08 09:24:55 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr19:18,121,740
INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 264265 as yet unmatched pairs. 79278 records in RAM.
INFO 2026-06-08 09:24:57 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:18,573,314
INFO 2026-06-08 09:24:57 MarkDuplicates Tracking 261961 as yet unmatched pairs. 76974 records in RAM.
INFO 2026-06-08 09:24:58 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:19,627,014
INFO 2026-06-08 09:24:58 MarkDuplicates Tracking 257958 as yet unmatched pairs. 72970 records in RAM.
INFO 2026-06-08 09:25:00 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:34,366,779
INFO 2026-06-08 09:25:00 MarkDuplicates Tracking 255767 as yet unmatched pairs. 70779 records in RAM.
INFO 2026-06-08 09:25:02 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:35,631,218
INFO 2026-06-08 09:25:02 MarkDuplicates Tracking 252001 as yet unmatched pairs. 67012 records in RAM.
INFO 2026-06-08 09:25:03 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:37,791,876
INFO 2026-06-08 09:25:03 MarkDuplicates Tracking 248837 as yet unmatched pairs. 63848 records in RAM.
INFO 2026-06-08 09:25:05 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:38,802,111
INFO 2026-06-08 09:25:05 MarkDuplicates Tracking 247652 as yet unmatched pairs. 62663 records in RAM.
INFO 2026-06-08 09:25:07 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr19:39,408,161
INFO 2026-06-08 09:25:07 MarkDuplicates Tracking 244079 as yet unmatched pairs. 59090 records in RAM.
INFO 2026-06-08 09:25:08 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:40,192,388
INFO 2026-06-08 09:25:08 MarkDuplicates Tracking 240684 as yet unmatched pairs. 55695 records in RAM.
INFO 2026-06-08 09:25:10 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:40,718,036
INFO 2026-06-08 09:25:10 MarkDuplicates Tracking 237922 as yet unmatched pairs. 52932 records in RAM.
INFO 2026-06-08 09:25:11 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,754
INFO 2026-06-08 09:25:11 MarkDuplicates Tracking 238932 as yet unmatched pairs. 53941 records in RAM.
INFO 2026-06-08 09:25:13 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr19:41,718,219
INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 236668 as yet unmatched pairs. 51677 records in RAM.
INFO 2026-06-08 09:25:15 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:41,903,723
INFO 2026-06-08 09:25:15 MarkDuplicates Tracking 230680 as yet unmatched pairs. 45688 records in RAM.
INFO 2026-06-08 09:25:16 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,219
INFO 2026-06-08 09:25:16 MarkDuplicates Tracking 228149 as yet unmatched pairs. 43157 records in RAM.
INFO 2026-06-08 09:25:18 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:43,552,963
INFO 2026-06-08 09:25:18 MarkDuplicates Tracking 225099 as yet unmatched pairs. 40104 records in RAM.
INFO 2026-06-08 09:25:19 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:45,064,464
INFO 2026-06-08 09:25:19 MarkDuplicates Tracking 222376 as yet unmatched pairs. 37380 records in RAM.
INFO 2026-06-08 09:25:21 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr19:45,785,890
INFO 2026-06-08 09:25:21 MarkDuplicates Tracking 219192 as yet unmatched pairs. 34195 records in RAM.
INFO 2026-06-08 09:25:23 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr19:47,226,584
INFO 2026-06-08 09:25:23 MarkDuplicates Tracking 216579 as yet unmatched pairs. 31582 records in RAM.
INFO 2026-06-08 09:25:25 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:48,485,627
INFO 2026-06-08 09:25:25 MarkDuplicates Tracking 212872 as yet unmatched pairs. 27874 records in RAM.
INFO 2026-06-08 09:25:27 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 2s. Last read position: chr19:48,987,333
INFO 2026-06-08 09:25:27 MarkDuplicates Tracking 210411 as yet unmatched pairs. 25413 records in RAM.
INFO 2026-06-08 09:25:29 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:49,499,518
INFO 2026-06-08 09:25:29 MarkDuplicates Tracking 209395 as yet unmatched pairs. 24397 records in RAM.
INFO 2026-06-08 09:25:30 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:49,792,046
INFO 2026-06-08 09:25:30 MarkDuplicates Tracking 204570 as yet unmatched pairs. 19572 records in RAM.
INFO 2026-06-08 09:25:32 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:50,276,125
INFO 2026-06-08 09:25:32 MarkDuplicates Tracking 201526 as yet unmatched pairs. 16528 records in RAM.
INFO 2026-06-08 09:25:33 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:52,219,855
INFO 2026-06-08 09:25:33 MarkDuplicates Tracking 198208 as yet unmatched pairs. 13210 records in RAM.
INFO 2026-06-08 09:25:35 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:54,240,969
INFO 2026-06-08 09:25:35 MarkDuplicates Tracking 195437 as yet unmatched pairs. 10439 records in RAM.
INFO 2026-06-08 09:25:36 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:55,227,514
INFO 2026-06-08 09:25:36 MarkDuplicates Tracking 192694 as yet unmatched pairs. 7696 records in RAM.
INFO 2026-06-08 09:25:38 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:55,691,832
INFO 2026-06-08 09:25:38 MarkDuplicates Tracking 189273 as yet unmatched pairs. 4274 records in RAM.
INFO 2026-06-08 09:25:40 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:58,388,165
INFO 2026-06-08 09:25:40 MarkDuplicates Tracking 188378 as yet unmatched pairs. 3379 records in RAM.
INFO 2026-06-08 09:25:42 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr20:1,164,340
INFO 2026-06-08 09:25:42 MarkDuplicates Tracking 183728 as yet unmatched pairs. 65761 records in RAM.
INFO 2026-06-08 09:25:45 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr20:3,191,659
INFO 2026-06-08 09:25:45 MarkDuplicates Tracking 181015 as yet unmatched pairs. 63045 records in RAM.
INFO 2026-06-08 09:25:46 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr20:5,558,793
INFO 2026-06-08 09:25:46 MarkDuplicates Tracking 178995 as yet unmatched pairs. 61025 records in RAM.
INFO 2026-06-08 09:25:48 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr20:9,444,221
INFO 2026-06-08 09:25:48 MarkDuplicates Tracking 175388 as yet unmatched pairs. 57418 records in RAM.
INFO 2026-06-08 09:25:49 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr20:17,633,541
INFO 2026-06-08 09:25:49 MarkDuplicates Tracking 173211 as yet unmatched pairs. 55240 records in RAM.
INFO 2026-06-08 09:25:51 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr20:17,970,214
INFO 2026-06-08 09:25:51 MarkDuplicates Tracking 170828 as yet unmatched pairs. 52857 records in RAM.
INFO 2026-06-08 09:25:52 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,947
INFO 2026-06-08 09:25:52 MarkDuplicates Tracking 169376 as yet unmatched pairs. 51405 records in RAM.
INFO 2026-06-08 09:25:54 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr20:31,566,280
INFO 2026-06-08 09:25:54 MarkDuplicates Tracking 165606 as yet unmatched pairs. 47635 records in RAM.
INFO 2026-06-08 09:25:55 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr20:33,443,501
INFO 2026-06-08 09:25:55 MarkDuplicates Tracking 162584 as yet unmatched pairs. 44613 records in RAM.
INFO 2026-06-08 09:25:57 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr20:34,856,775
INFO 2026-06-08 09:25:57 MarkDuplicates Tracking 160250 as yet unmatched pairs. 42279 records in RAM.
INFO 2026-06-08 09:25:58 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr20:35,627,014
INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 157183 as yet unmatched pairs. 39209 records in RAM.
INFO 2026-06-08 09:26:00 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr20:36,612,040
INFO 2026-06-08 09:26:00 MarkDuplicates Tracking 155141 as yet unmatched pairs. 37167 records in RAM.
INFO 2026-06-08 09:26:02 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr20:41,028,951
INFO 2026-06-08 09:26:02 MarkDuplicates Tracking 151824 as yet unmatched pairs. 33849 records in RAM.
INFO 2026-06-08 09:26:03 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr20:44,247,256
INFO 2026-06-08 09:26:03 MarkDuplicates Tracking 149205 as yet unmatched pairs. 31230 records in RAM.
INFO 2026-06-08 09:26:05 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr20:45,409,943
INFO 2026-06-08 09:26:05 MarkDuplicates Tracking 146762 as yet unmatched pairs. 28786 records in RAM.
INFO 2026-06-08 09:26:07 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr20:46,389,220
INFO 2026-06-08 09:26:07 MarkDuplicates Tracking 143752 as yet unmatched pairs. 25776 records in RAM.
INFO 2026-06-08 09:26:10 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr20:49,242,193
INFO 2026-06-08 09:26:10 MarkDuplicates Tracking 141383 as yet unmatched pairs. 23407 records in RAM.
INFO 2026-06-08 09:26:11 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr20:51,601,239
INFO 2026-06-08 09:26:11 MarkDuplicates Tracking 139295 as yet unmatched pairs. 21318 records in RAM.
INFO 2026-06-08 09:26:13 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,208
INFO 2026-06-08 09:26:13 MarkDuplicates Tracking 136367 as yet unmatched pairs. 18388 records in RAM.
INFO 2026-06-08 09:26:14 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:59,030,342
INFO 2026-06-08 09:26:14 MarkDuplicates Tracking 133633 as yet unmatched pairs. 15654 records in RAM.
INFO 2026-06-08 09:26:16 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr20:62,328,306
INFO 2026-06-08 09:26:16 MarkDuplicates Tracking 129740 as yet unmatched pairs. 11761 records in RAM.
INFO 2026-06-08 09:26:17 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,413
INFO 2026-06-08 09:26:17 MarkDuplicates Tracking 127710 as yet unmatched pairs. 9731 records in RAM.
INFO 2026-06-08 09:26:19 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,516
INFO 2026-06-08 09:26:19 MarkDuplicates Tracking 125829 as yet unmatched pairs. 7849 records in RAM.
INFO 2026-06-08 09:26:20 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr20:63,733,684
INFO 2026-06-08 09:26:20 MarkDuplicates Tracking 120714 as yet unmatched pairs. 2734 records in RAM.
INFO 2026-06-08 09:26:22 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr21:6,121,226
INFO 2026-06-08 09:26:22 MarkDuplicates Tracking 117798 as yet unmatched pairs. 22783 records in RAM.
INFO 2026-06-08 09:26:24 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,895
INFO 2026-06-08 09:26:24 MarkDuplicates Tracking 115097 as yet unmatched pairs. 20074 records in RAM.
INFO 2026-06-08 09:26:25 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,117
INFO 2026-06-08 09:26:25 MarkDuplicates Tracking 114421 as yet unmatched pairs. 19396 records in RAM.
INFO 2026-06-08 09:26:26 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,300
INFO 2026-06-08 09:26:26 MarkDuplicates Tracking 111973 as yet unmatched pairs. 16947 records in RAM.
INFO 2026-06-08 09:26:27 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr21:26,112,106
INFO 2026-06-08 09:26:27 MarkDuplicates Tracking 110922 as yet unmatched pairs. 15896 records in RAM.
INFO 2026-06-08 09:26:29 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr21:33,575,810
INFO 2026-06-08 09:26:29 MarkDuplicates Tracking 107030 as yet unmatched pairs. 12004 records in RAM.
INFO 2026-06-08 09:26:30 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr21:38,822,672
INFO 2026-06-08 09:26:30 MarkDuplicates Tracking 104458 as yet unmatched pairs. 9431 records in RAM.
INFO 2026-06-08 09:26:32 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr21:43,419,224
INFO 2026-06-08 09:26:32 MarkDuplicates Tracking 101820 as yet unmatched pairs. 6793 records in RAM.
INFO 2026-06-08 09:26:33 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr21:45,473,920
INFO 2026-06-08 09:26:33 MarkDuplicates Tracking 99203 as yet unmatched pairs. 4176 records in RAM.
INFO 2026-06-08 09:26:34 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr21:46,286,963
INFO 2026-06-08 09:26:34 MarkDuplicates Tracking 95896 as yet unmatched pairs. 869 records in RAM.
INFO 2026-06-08 09:26:36 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr22:19,963,566
INFO 2026-06-08 09:26:36 MarkDuplicates Tracking 93280 as yet unmatched pairs. 37417 records in RAM.
INFO 2026-06-08 09:26:38 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr22:22,548,194
INFO 2026-06-08 09:26:38 MarkDuplicates Tracking 90319 as yet unmatched pairs. 34456 records in RAM.
INFO 2026-06-08 09:26:40 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,870
INFO 2026-06-08 09:26:40 MarkDuplicates Tracking 87760 as yet unmatched pairs. 31897 records in RAM.
INFO 2026-06-08 09:26:41 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr22:28,987,106
INFO 2026-06-08 09:26:41 MarkDuplicates Tracking 84612 as yet unmatched pairs. 28749 records in RAM.
INFO 2026-06-08 09:26:43 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr22:29,528,425
INFO 2026-06-08 09:26:43 MarkDuplicates Tracking 82107 as yet unmatched pairs. 26244 records in RAM.
INFO 2026-06-08 09:26:45 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 2s. Last read position: chr22:31,623,706
INFO 2026-06-08 09:26:45 MarkDuplicates Tracking 79575 as yet unmatched pairs. 23712 records in RAM.
INFO 2026-06-08 09:26:46 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr22:36,294,206
INFO 2026-06-08 09:26:46 MarkDuplicates Tracking 77213 as yet unmatched pairs. 21350 records in RAM.
INFO 2026-06-08 09:26:48 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,693
INFO 2026-06-08 09:26:48 MarkDuplicates Tracking 73843 as yet unmatched pairs. 17980 records in RAM.
INFO 2026-06-08 09:26:49 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr22:38,716,666
INFO 2026-06-08 09:26:49 MarkDuplicates Tracking 71215 as yet unmatched pairs. 15352 records in RAM.
INFO 2026-06-08 09:26:51 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr22:40,848,313
INFO 2026-06-08 09:26:51 MarkDuplicates Tracking 68585 as yet unmatched pairs. 12722 records in RAM.
INFO 2026-06-08 09:26:53 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr22:42,210,087
INFO 2026-06-08 09:26:53 MarkDuplicates Tracking 66021 as yet unmatched pairs. 10158 records in RAM.
INFO 2026-06-08 09:26:54 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr22:46,534,807
INFO 2026-06-08 09:26:54 MarkDuplicates Tracking 62890 as yet unmatched pairs. 7027 records in RAM.
INFO 2026-06-08 09:26:56 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr22:50,289,865
INFO 2026-06-08 09:26:56 MarkDuplicates Tracking 60151 as yet unmatched pairs. 4286 records in RAM.
INFO 2026-06-08 09:26:57 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr22:50,730,669
INFO 2026-06-08 09:26:57 MarkDuplicates Tracking 56057 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 09:26:59 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chrX:8,131,115
INFO 2026-06-08 09:26:59 MarkDuplicates Tracking 53347 as yet unmatched pairs. 40746 records in RAM.
INFO 2026-06-08 09:27:01 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chrX:19,359,499
INFO 2026-06-08 09:27:01 MarkDuplicates Tracking 51378 as yet unmatched pairs. 38771 records in RAM.
INFO 2026-06-08 09:27:02 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chrX:40,071,637
INFO 2026-06-08 09:27:02 MarkDuplicates Tracking 49037 as yet unmatched pairs. 36429 records in RAM.
INFO 2026-06-08 09:27:04 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chrX:45,061,377
INFO 2026-06-08 09:27:04 MarkDuplicates Tracking 46238 as yet unmatched pairs. 33628 records in RAM.
INFO 2026-06-08 09:27:05 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chrX:48,576,203
INFO 2026-06-08 09:27:05 MarkDuplicates Tracking 44138 as yet unmatched pairs. 31528 records in RAM.
INFO 2026-06-08 09:27:07 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrX:49,174,390
INFO 2026-06-08 09:27:07 MarkDuplicates Tracking 40841 as yet unmatched pairs. 28231 records in RAM.
INFO 2026-06-08 09:27:08 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chrX:53,538,835
INFO 2026-06-08 09:27:08 MarkDuplicates Tracking 38463 as yet unmatched pairs. 25853 records in RAM.
INFO 2026-06-08 09:27:10 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:57,592,434
INFO 2026-06-08 09:27:10 MarkDuplicates Tracking 35880 as yet unmatched pairs. 23270 records in RAM.
INFO 2026-06-08 09:27:13 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 2s. Last read position: chrX:71,126,335
INFO 2026-06-08 09:27:13 MarkDuplicates Tracking 33022 as yet unmatched pairs. 20410 records in RAM.
INFO 2026-06-08 09:27:14 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chrX:72,273,833
INFO 2026-06-08 09:27:14 MarkDuplicates Tracking 31138 as yet unmatched pairs. 18526 records in RAM.
INFO 2026-06-08 09:27:16 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chrX:85,289,695
INFO 2026-06-08 09:27:16 MarkDuplicates Tracking 28639 as yet unmatched pairs. 16027 records in RAM.
INFO 2026-06-08 09:27:17 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chrX:107,716,711
INFO 2026-06-08 09:27:17 MarkDuplicates Tracking 26351 as yet unmatched pairs. 13739 records in RAM.
INFO 2026-06-08 09:27:19 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chrX:124,095,368
INFO 2026-06-08 09:27:19 MarkDuplicates Tracking 24006 as yet unmatched pairs. 11394 records in RAM.
INFO 2026-06-08 09:27:20 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chrX:147,912,143
INFO 2026-06-08 09:27:20 MarkDuplicates Tracking 21756 as yet unmatched pairs. 9143 records in RAM.
INFO 2026-06-08 09:27:22 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chrX:153,950,469
INFO 2026-06-08 09:27:22 MarkDuplicates Tracking 19358 as yet unmatched pairs. 6744 records in RAM.
INFO 2026-06-08 09:27:24 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,464
INFO 2026-06-08 09:27:24 MarkDuplicates Tracking 18172 as yet unmatched pairs. 5558 records in RAM.
INFO 2026-06-08 09:27:26 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chrX:154,506,843
INFO 2026-06-08 09:27:26 MarkDuplicates Tracking 13789 as yet unmatched pairs. 1175 records in RAM.
INFO 2026-06-08 09:27:28 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,149
INFO 2026-06-08 09:27:28 MarkDuplicates Tracking 12136 as yet unmatched pairs. 2556 records in RAM.
INFO 2026-06-08 09:27:29 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,085
INFO 2026-06-08 09:27:29 MarkDuplicates Tracking 9726 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 09:27:30 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: KI270711.1:26,453
INFO 2026-06-08 09:27:30 MarkDuplicates Tracking 9556 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 09:27:31 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,533
INFO 2026-06-08 09:27:31 MarkDuplicates Tracking 728 as yet unmatched pairs. 690 records in RAM.
INFO 2026-06-08 09:27:32 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,323
INFO 2026-06-08 09:27:32 MarkDuplicates Tracking 50 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 09:27:32 MarkDuplicates Read 638192077 records. 0 pairs never matched.
INFO 2026-06-08 09:28:16 MarkDuplicates After buildSortedReadEndLists freeMemory: 204137664; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:28:16 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:28:21 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:28:22 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,867
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1509
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,650
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,463
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1674
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,117
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1727
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,681
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 2928
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,271
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,460
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,548
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,702
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1433
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,061
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder Large duplicate set. size = 1549
INFO 2026-06-08 09:28:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,285
INFO 2026-06-08 09:28:44 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 09:28:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,859
INFO 2026-06-08 09:28:50 OpticalDuplicateFinder Large duplicate set. size = 1511
INFO 2026-06-08 09:28:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,502
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,342
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,184
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,065
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,729
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder Large duplicate set. size = 1343
INFO 2026-06-08 09:29:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,880
INFO 2026-06-08 09:30:07 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:30:07 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:31:19 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:31:27 MarkDuplicates After generateDuplicateIndexes freeMemory: 203957192; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:31:27 MarkDuplicates Marking 414069896 records as duplicates.
INFO 2026-06-08 09:31:27 MarkDuplicates Found 20589845 optical duplicate clusters.
INFO 2026-06-08 09:31:27 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:31:44 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:22,661,225
INFO 2026-06-08 09:32:00 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:46,023,870
INFO 2026-06-08 09:32:15 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 15s. Last read position: chr1:146,106,593
INFO 2026-06-08 09:32:31 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:159,016,560
INFO 2026-06-08 09:32:46 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 15s. Last read position: chr1:221,739,534
INFO 2026-06-08 09:33:00 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 14s. Last read position: chr2:32,916,263
INFO 2026-06-08 09:33:15 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 14s. Last read position: chr2:69,465,472
INFO 2026-06-08 09:33:30 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 14s. Last read position: chr2:119,368,184
INFO 2026-06-08 09:33:45 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 14s. Last read position: chr2:215,373,311
INFO 2026-06-08 09:34:00 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:33s. Time for last 10,000,000: 14s. Last read position: chr3:9,825,864
INFO 2026-06-08 09:34:16 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 15s. Last read position: chr3:50,642,299
INFO 2026-06-08 09:34:30 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:03s. Time for last 10,000,000: 14s. Last read position: chr3:150,546,052
INFO 2026-06-08 09:34:45 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:18s. Time for last 10,000,000: 14s. Last read position: chr4:22,435,398
INFO 2026-06-08 09:35:01 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:34s. Time for last 10,000,000: 15s. Last read position: chr4:185,734,073
INFO 2026-06-08 09:35:16 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 15s. Last read position: chr5:128,178,667
INFO 2026-06-08 09:35:32 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 15s. Last read position: chr5:150,648,989
INFO 2026-06-08 09:35:47 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 15s. Last read position: chr6:7,883,149
INFO 2026-06-08 09:36:03 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:35s. Time for last 10,000,000: 15s. Last read position: chr6:31,732,264
INFO 2026-06-08 09:36:18 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:50s. Time for last 10,000,000: 15s. Last read position: chr6:43,771,138
INFO 2026-06-08 09:36:33 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 14s. Last read position: chr6:138,262,764
INFO 2026-06-08 09:36:48 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:21s. Time for last 10,000,000: 15s. Last read position: chr7:5,528,353
INFO 2026-06-08 09:37:03 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:36s. Time for last 10,000,000: 15s. Last read position: chr7:75,320,745
INFO 2026-06-08 09:37:19 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 15s. Last read position: chr7:100,998,870
INFO 2026-06-08 09:37:34 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 14s. Last read position: chr7:141,601,262
INFO 2026-06-08 09:37:49 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:21s. Time for last 10,000,000: 14s. Last read position: chr8:38,757,341
INFO 2026-06-08 09:38:03 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:36s. Time for last 10,000,000: 14s. Last read position: chr8:143,275,088
INFO 2026-06-08 09:38:18 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 14s. Last read position: chr8:143,870,864
INFO 2026-06-08 09:38:35 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:07s. Time for last 10,000,000: 16s. Last read position: chr9:70,170,534
INFO 2026-06-08 09:38:50 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 15s. Last read position: chr9:131,127,522
INFO 2026-06-08 09:39:07 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 16s. Last read position: chr10:32,926,045
INFO 2026-06-08 09:39:23 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 16s. Last read position: chr10:102,401,216
INFO 2026-06-08 09:39:40 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 16s. Last read position: chr11:6,548,704
INFO 2026-06-08 09:39:56 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:28s. Time for last 10,000,000: 16s. Last read position: chr11:63,753,072
INFO 2026-06-08 09:40:12 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:45s. Time for last 10,000,000: 16s. Last read position: chr11:75,815,453
INFO 2026-06-08 09:40:28 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 15s. Last read position: chr12:6,769,972
INFO 2026-06-08 09:40:44 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 16s. Last read position: chr12:52,952,320
INFO 2026-06-08 09:40:59 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 14s. Last read position: chr12:71,663,305
INFO 2026-06-08 09:41:15 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 15s. Last read position: chr12:130,991,013
INFO 2026-06-08 09:41:29 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:02s. Time for last 10,000,000: 14s. Last read position: chr13:110,307,896