Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:39:12.803 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:39:12 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:39:12 GMT 2026] Executing as ?@nf-f1416b0a59a47112461dd17b51bf2044-dd333-vs2bc on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:39:12 MarkDuplicates Start of doWork freeMemory: 105829672; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:39:12 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:39:12 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:39:17 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,392,724 INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 3782 as yet unmatched pairs. 603 records in RAM. INFO 2026-06-08 08:39:19 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:3,727,715 INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 6369 as yet unmatched pairs. 11 records in RAM. INFO 2026-06-08 08:39:21 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:8,361,395 INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 9675 as yet unmatched pairs. 284 records in RAM. INFO 2026-06-08 08:39:23 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:11,212,454 INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 12472 as yet unmatched pairs. 161 records in RAM. INFO 2026-06-08 08:39:25 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:15,729,179 INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 15399 as yet unmatched pairs. 316 records in RAM. INFO 2026-06-08 08:39:28 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:17,607,805 INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 18199 as yet unmatched pairs. 565 records in RAM. INFO 2026-06-08 08:39:30 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:20,644,651 INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 20766 as yet unmatched pairs. 292 records in RAM. INFO 2026-06-08 08:39:33 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,839,875 INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 24113 as yet unmatched pairs. 830 records in RAM. INFO 2026-06-08 08:39:35 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:21,885,066 INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 27615 as yet unmatched pairs. 1304 records in RAM. INFO 2026-06-08 08:39:37 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:23,559,141 INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 29571 as yet unmatched pairs. 532 records in RAM. INFO 2026-06-08 08:39:40 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:26,280,861 INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 34973 as yet unmatched pairs. 3366 records in RAM. INFO 2026-06-08 08:39:42 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:28,017,153 INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 34537 as yet unmatched pairs. 185 records in RAM. INFO 2026-06-08 08:39:44 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:31,683,193 INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 38029 as yet unmatched pairs. 874 records in RAM. INFO 2026-06-08 08:39:46 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:33,329,033 INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 40327 as yet unmatched pairs. 412 records in RAM. INFO 2026-06-08 08:39:48 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:37,501,903 INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 43241 as yet unmatched pairs. 372 records in RAM. INFO 2026-06-08 08:39:50 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:39,479,836 INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 46749 as yet unmatched pairs. 1268 records in RAM. INFO 2026-06-08 08:39:53 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:42,748,227 INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 48252 as yet unmatched pairs. 277 records in RAM. INFO 2026-06-08 08:39:55 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:44,635,547 INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 51372 as yet unmatched pairs. 314 records in RAM. INFO 2026-06-08 08:39:57 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:46,346,885 INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 53795 as yet unmatched pairs. 165 records in RAM. INFO 2026-06-08 08:39:59 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:53,796,702 INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 56467 as yet unmatched pairs. 112 records in RAM. INFO 2026-06-08 08:40:01 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:62,448,561 INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 59391 as yet unmatched pairs. 358 records in RAM. INFO 2026-06-08 08:40:04 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:77,730,669 INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 61607 as yet unmatched pairs. 152 records in RAM. INFO 2026-06-08 08:40:05 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:89,686,578 INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 64119 as yet unmatched pairs. 111 records in RAM. INFO 2026-06-08 08:40:07 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:100,896,251 INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 66475 as yet unmatched pairs. 152 records in RAM. INFO 2026-06-08 08:40:09 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:109,657,218 INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 69256 as yet unmatched pairs. 298 records in RAM. INFO 2026-06-08 08:40:11 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:112,917,641 INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 71799 as yet unmatched pairs. 252 records in RAM. INFO 2026-06-08 08:40:13 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:116,384,833 INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 74739 as yet unmatched pairs. 720 records in RAM. INFO 2026-06-08 08:40:16 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:119,922,417 INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 77859 as yet unmatched pairs. 1288 records in RAM. INFO 2026-06-08 08:40:18 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:120,814,900 INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 79088 as yet unmatched pairs. 311 records in RAM. INFO 2026-06-08 08:40:19 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:146,138,397 INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 81468 as yet unmatched pairs. 1259 records in RAM. INFO 2026-06-08 08:40:21 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:148,607,081 INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 81703 as yet unmatched pairs. 422 records in RAM. INFO 2026-06-08 08:40:22 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,693 INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 83191 as yet unmatched pairs. 196 records in RAM. INFO 2026-06-08 08:40:24 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:150,733,024 INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 86339 as yet unmatched pairs. 982 records in RAM. INFO 2026-06-08 08:40:27 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:151,983,225 INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 89805 as yet unmatched pairs. 1850 records in RAM. INFO 2026-06-08 08:40:29 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:154,157,638 INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 100121 as yet unmatched pairs. 9654 records in RAM. INFO 2026-06-08 08:40:31 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,944,965 INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 93419 as yet unmatched pairs. 340 records in RAM. INFO 2026-06-08 08:40:32 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:155,478,034 INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 96275 as yet unmatched pairs. 410 records in RAM. INFO 2026-06-08 08:40:34 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,852 INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 100831 as yet unmatched pairs. 2104 records in RAM. INFO 2026-06-08 08:40:35 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,738,046 INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 102024 as yet unmatched pairs. 116 records in RAM. INFO 2026-06-08 08:40:38 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:160,637,509 INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 104596 as yet unmatched pairs. 43 records in RAM. INFO 2026-06-08 08:40:40 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:163,147,258 INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 107807 as yet unmatched pairs. 758 records in RAM. INFO 2026-06-08 08:40:42 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,433 INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 114354 as yet unmatched pairs. 4607 records in RAM. INFO 2026-06-08 08:40:44 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:178,094,549 INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 112738 as yet unmatched pairs. 544 records in RAM. INFO 2026-06-08 08:40:45 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:183,186,307 INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 115966 as yet unmatched pairs. 1051 records in RAM. INFO 2026-06-08 08:40:47 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:186,346,140 INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 117922 as yet unmatched pairs. 563 records in RAM. INFO 2026-06-08 08:40:49 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:201,381,821 INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 120822 as yet unmatched pairs. 1142 records in RAM. INFO 2026-06-08 08:40:50 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:202,808,181 INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 122752 as yet unmatched pairs. 464 records in RAM. INFO 2026-06-08 08:40:53 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:204,532,380 INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 124876 as yet unmatched pairs. 91 records in RAM. INFO 2026-06-08 08:40:55 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:207,883,239 INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 127298 as yet unmatched pairs. 22 records in RAM. INFO 2026-06-08 08:40:57 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:219,987,381 INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 130130 as yet unmatched pairs. 213 records in RAM. INFO 2026-06-08 08:40:58 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:225,777,980 INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 133921 as yet unmatched pairs. 1499 records in RAM. INFO 2026-06-08 08:41:00 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:228,493,069 INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 135491 as yet unmatched pairs. 388 records in RAM. INFO 2026-06-08 08:41:02 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:235,550,887 INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 138566 as yet unmatched pairs. 533 records in RAM. INFO 2026-06-08 08:41:03 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:244,857,596 INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 142214 as yet unmatched pairs. 1611 records in RAM. INFO 2026-06-08 08:41:06 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:3,580,251 INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 143443 as yet unmatched pairs. 142009 records in RAM. INFO 2026-06-08 08:41:08 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:15,308,253 INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 146186 as yet unmatched pairs. 144731 records in RAM. INFO 2026-06-08 08:41:10 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:24,308,702 INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 149153 as yet unmatched pairs. 147675 records in RAM. INFO 2026-06-08 08:41:13 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 3s. Last read position: chr2:27,082,342 INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 151897 as yet unmatched pairs. 150404 records in RAM. INFO 2026-06-08 08:41:15 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:28,752,053 INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 156975 as yet unmatched pairs. 155459 records in RAM. INFO 2026-06-08 08:41:17 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,248 INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 159542 as yet unmatched pairs. 155419 records in RAM. INFO 2026-06-08 08:41:19 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 296933 as yet unmatched pairs. 153153 records in RAM. INFO 2026-06-08 08:41:21 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 971108 as yet unmatched pairs. 141591 records in RAM. INFO 2026-06-08 08:41:23 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 1377787 as yet unmatched pairs. 134323 records in RAM. INFO 2026-06-08 08:41:24 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1386595 as yet unmatched pairs. 134258 records in RAM. INFO 2026-06-08 08:41:26 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:36,356,506 INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 1479782 as yet unmatched pairs. 132007 records in RAM. INFO 2026-06-08 08:41:28 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:42,055,307 INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 1477399 as yet unmatched pairs. 129601 records in RAM. INFO 2026-06-08 08:41:29 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:43,590,824 INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 1474713 as yet unmatched pairs. 126887 records in RAM. INFO 2026-06-08 08:41:32 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:47,813,246 INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 1471582 as yet unmatched pairs. 123737 records in RAM. INFO 2026-06-08 08:41:34 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:54,667,631 INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 1469349 as yet unmatched pairs. 121478 records in RAM. INFO 2026-06-08 08:41:36 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:61,478,871 INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 1467078 as yet unmatched pairs. 119188 records in RAM. INFO 2026-06-08 08:41:38 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:69,143,774 INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 1466140 as yet unmatched pairs. 118223 records in RAM. INFO 2026-06-08 08:41:40 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:73,214,276 INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 1461468 as yet unmatched pairs. 113514 records in RAM. INFO 2026-06-08 08:41:42 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:74,461,737 INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 1459238 as yet unmatched pairs. 111266 records in RAM. INFO 2026-06-08 08:41:44 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:86,028,675 INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 1456228 as yet unmatched pairs. 108229 records in RAM. INFO 2026-06-08 08:41:46 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:95,876,486 INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 1454329 as yet unmatched pairs. 106300 records in RAM. INFO 2026-06-08 08:41:48 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:98,555,575 INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 1452084 as yet unmatched pairs. 104037 records in RAM. INFO 2026-06-08 08:41:49 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:106,424,363 INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 1449273 as yet unmatched pairs. 101180 records in RAM. INFO 2026-06-08 08:41:51 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:108,768,178 INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 1449726 as yet unmatched pairs. 101628 records in RAM. INFO 2026-06-08 08:41:54 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:111,864,892 INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 1446503 as yet unmatched pairs. 98389 records in RAM. INFO 2026-06-08 08:41:56 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:119,254,700 INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 1444221 as yet unmatched pairs. 96080 records in RAM. INFO 2026-06-08 08:41:57 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:130,153,410 INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 1441454 as yet unmatched pairs. 93286 records in RAM. INFO 2026-06-08 08:41:59 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:144,517,311 INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 1439460 as yet unmatched pairs. 91257 records in RAM. INFO 2026-06-08 08:42:01 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:159,817,012 INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1436773 as yet unmatched pairs. 88513 records in RAM. INFO 2026-06-08 08:42:02 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:171,707,335 INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 1435086 as yet unmatched pairs. 86764 records in RAM. INFO 2026-06-08 08:42:04 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:177,231,284 INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 1432401 as yet unmatched pairs. 84054 records in RAM. INFO 2026-06-08 08:42:06 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:186,622,397 INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 1430999 as yet unmatched pairs. 82621 records in RAM. INFO 2026-06-08 08:42:08 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:188,995,080 INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 1433927 as yet unmatched pairs. 85515 records in RAM. INFO 2026-06-08 08:42:10 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:189,007,894 INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1430749 as yet unmatched pairs. 82301 records in RAM. INFO 2026-06-08 08:42:12 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:189,110,435 INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1422198 as yet unmatched pairs. 73720 records in RAM. INFO 2026-06-08 08:42:14 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:197,416,796 INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 1418444 as yet unmatched pairs. 69933 records in RAM. INFO 2026-06-08 08:42:15 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:202,520,126 INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 1415700 as yet unmatched pairs. 67151 records in RAM. INFO 2026-06-08 08:42:17 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:208,277,283 INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1413120 as yet unmatched pairs. 64551 records in RAM. INFO 2026-06-08 08:42:19 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,058 INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1441361 as yet unmatched pairs. 92785 records in RAM. INFO 2026-06-08 08:42:21 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,391 INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 1437925 as yet unmatched pairs. 89337 records in RAM. INFO 2026-06-08 08:42:23 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,170 INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 1458476 as yet unmatched pairs. 109878 records in RAM. INFO 2026-06-08 08:42:27 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 3s. Last read position: chr2:215,375,254 INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 1428007 as yet unmatched pairs. 79398 records in RAM. INFO 2026-06-08 08:42:28 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,593 INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1419196 as yet unmatched pairs. 70578 records in RAM. INFO 2026-06-08 08:42:30 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,273 INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 1443497 as yet unmatched pairs. 94873 records in RAM. INFO 2026-06-08 08:42:32 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,435 INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 1406640 as yet unmatched pairs. 57994 records in RAM. INFO 2026-06-08 08:42:34 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,908 INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 1429263 as yet unmatched pairs. 80608 records in RAM. INFO 2026-06-08 08:42:35 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,653 INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 1400246 as yet unmatched pairs. 51583 records in RAM. INFO 2026-06-08 08:42:37 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,319 INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 1409540 as yet unmatched pairs. 60865 records in RAM. INFO 2026-06-08 08:42:39 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,467 INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 1407417 as yet unmatched pairs. 58717 records in RAM. INFO 2026-06-08 08:42:41 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,404 INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 1413780 as yet unmatched pairs. 65071 records in RAM. INFO 2026-06-08 08:42:42 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,873 INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 1395902 as yet unmatched pairs. 47182 records in RAM. INFO 2026-06-08 08:42:44 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:215,423,459 INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1388825 as yet unmatched pairs. 40085 records in RAM. INFO 2026-06-08 08:42:46 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,267 INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 1393990 as yet unmatched pairs. 45242 records in RAM. INFO 2026-06-08 08:42:49 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:215,434,743 INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1392360 as yet unmatched pairs. 43587 records in RAM. INFO 2026-06-08 08:42:51 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:217,804,527 INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1372843 as yet unmatched pairs. 24038 records in RAM. INFO 2026-06-08 08:42:52 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:218,343,548 INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 1369237 as yet unmatched pairs. 20405 records in RAM. INFO 2026-06-08 08:42:54 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:219,420,296 INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 1368791 as yet unmatched pairs. 19940 records in RAM. INFO 2026-06-08 08:42:56 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:226,796,613 INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 1363537 as yet unmatched pairs. 14651 records in RAM. INFO 2026-06-08 08:42:58 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr2:231,460,077 INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 1361579 as yet unmatched pairs. 12672 records in RAM. INFO 2026-06-08 08:43:01 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:237,089,885 INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 1357951 as yet unmatched pairs. 9011 records in RAM. INFO 2026-06-08 08:43:02 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:237,371,756 INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1361247 as yet unmatched pairs. 12293 records in RAM. INFO 2026-06-08 08:43:04 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:239,990,165 INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1352925 as yet unmatched pairs. 3931 records in RAM. INFO 2026-06-08 08:43:06 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr2:241,670,766 INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1349609 as yet unmatched pairs. 581 records in RAM. INFO 2026-06-08 08:43:09 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 3s. Last read position: chr3:9,948,688 INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 1346644 as yet unmatched pairs. 74435 records in RAM. INFO 2026-06-08 08:43:11 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:13,571,600 INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 1344147 as yet unmatched pairs. 71914 records in RAM. INFO 2026-06-08 08:43:12 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:23,967,954 INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 1341936 as yet unmatched pairs. 69648 records in RAM. INFO 2026-06-08 08:43:14 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:36,842,641 INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 1339098 as yet unmatched pairs. 66782 records in RAM. INFO 2026-06-08 08:43:16 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:40,461,405 INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 1338933 as yet unmatched pairs. 66590 records in RAM. INFO 2026-06-08 08:43:18 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:43,561,382 INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 1334212 as yet unmatched pairs. 61831 records in RAM. INFO 2026-06-08 08:43:20 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:47,121,414 INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 1332188 as yet unmatched pairs. 59792 records in RAM. INFO 2026-06-08 08:43:21 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:48,416,122 INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 1329114 as yet unmatched pairs. 56690 records in RAM. INFO 2026-06-08 08:43:23 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:49,013,313 INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 1327292 as yet unmatched pairs. 54843 records in RAM. INFO 2026-06-08 08:43:25 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:49,368,450 INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 1324453 as yet unmatched pairs. 51985 records in RAM. INFO 2026-06-08 08:43:26 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:50,318,121 INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 1320241 as yet unmatched pairs. 47763 records in RAM. INFO 2026-06-08 08:43:28 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:52,484,456 INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 1317595 as yet unmatched pairs. 45093 records in RAM. INFO 2026-06-08 08:43:31 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr3:56,623,203 INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 1315051 as yet unmatched pairs. 42539 records in RAM. INFO 2026-06-08 08:43:33 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:61,742,841 INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 1312387 as yet unmatched pairs. 39849 records in RAM. INFO 2026-06-08 08:43:35 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:73,064,991 INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1309831 as yet unmatched pairs. 37250 records in RAM. INFO 2026-06-08 08:43:36 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:100,732,604 INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 1308480 as yet unmatched pairs. 35867 records in RAM. INFO 2026-06-08 08:43:38 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:112,638,902 INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 1305093 as yet unmatched pairs. 32460 records in RAM. INFO 2026-06-08 08:43:40 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:121,694,280 INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 1302580 as yet unmatched pairs. 29928 records in RAM. INFO 2026-06-08 08:43:43 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr3:123,948,927 INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 1300295 as yet unmatched pairs. 27630 records in RAM. INFO 2026-06-08 08:43:44 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:128,060,646 INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 1297454 as yet unmatched pairs. 24768 records in RAM. INFO 2026-06-08 08:43:46 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:130,969,307 INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 1294651 as yet unmatched pairs. 21944 records in RAM. INFO 2026-06-08 08:43:48 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:141,443,111 INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 1291894 as yet unmatched pairs. 19164 records in RAM. INFO 2026-06-08 08:43:49 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:149,938,719 INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 1289394 as yet unmatched pairs. 16613 records in RAM. INFO 2026-06-08 08:43:52 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr3:168,029,266 INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1286923 as yet unmatched pairs. 14118 records in RAM. INFO 2026-06-08 08:43:53 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:179,260,069 INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 1284517 as yet unmatched pairs. 11667 records in RAM. INFO 2026-06-08 08:43:55 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:184,319,726 INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1282473 as yet unmatched pairs. 9599 records in RAM. INFO 2026-06-08 08:43:57 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:188,341,670 INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1286303 as yet unmatched pairs. 13413 records in RAM. INFO 2026-06-08 08:43:58 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:193,654,882 INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 1277295 as yet unmatched pairs. 4379 records in RAM. INFO 2026-06-08 08:44:00 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,194 INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 1275361 as yet unmatched pairs. 2431 records in RAM. INFO 2026-06-08 08:44:02 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr4:744,671 INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1272749 as yet unmatched pairs. 38859 records in RAM. INFO 2026-06-08 08:44:05 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 3s. Last read position: chr4:2,694,965 INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 1269686 as yet unmatched pairs. 35770 records in RAM. INFO 2026-06-08 08:44:07 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:7,809,703 INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1267854 as yet unmatched pairs. 33893 records in RAM. INFO 2026-06-08 08:44:09 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:17,886,147 INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1264115 as yet unmatched pairs. 30124 records in RAM. INFO 2026-06-08 08:44:10 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:39,777,644 INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 1261806 as yet unmatched pairs. 27775 records in RAM. INFO 2026-06-08 08:44:12 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr4:54,277,995 INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 1260455 as yet unmatched pairs. 26386 records in RAM. INFO 2026-06-08 08:44:14 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:68,316,406 INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 1256877 as yet unmatched pairs. 22765 records in RAM. INFO 2026-06-08 08:44:17 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr4:76,022,754 INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1254124 as yet unmatched pairs. 19992 records in RAM. INFO 2026-06-08 08:44:19 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:83,066,476 INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1251482 as yet unmatched pairs. 17331 records in RAM. INFO 2026-06-08 08:44:20 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr4:94,575,951 INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 1249517 as yet unmatched pairs. 15332 records in RAM. INFO 2026-06-08 08:44:22 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:112,788,559 INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1246434 as yet unmatched pairs. 12232 records in RAM. INFO 2026-06-08 08:44:24 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr4:122,318,225 INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1244193 as yet unmatched pairs. 9970 records in RAM. INFO 2026-06-08 08:44:26 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr4:145,902,819 INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1242009 as yet unmatched pairs. 7756 records in RAM. INFO 2026-06-08 08:44:28 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr4:155,711,188 INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 1239501 as yet unmatched pairs. 5229 records in RAM. INFO 2026-06-08 08:44:30 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr4:183,289,493 INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1236653 as yet unmatched pairs. 2348 records in RAM. INFO 2026-06-08 08:44:32 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:457,997 INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1234234 as yet unmatched pairs. 68779 records in RAM. INFO 2026-06-08 08:44:34 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:14,270,877 INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1232631 as yet unmatched pairs. 67156 records in RAM. INFO 2026-06-08 08:44:35 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,520 INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 1228477 as yet unmatched pairs. 62983 records in RAM. INFO 2026-06-08 08:44:37 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:33,576,986 INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1226322 as yet unmatched pairs. 60803 records in RAM. INFO 2026-06-08 08:44:39 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:41,749,526 INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1223708 as yet unmatched pairs. 58163 records in RAM. INFO 2026-06-08 08:44:41 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:62,381,102 INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1221478 as yet unmatched pairs. 55895 records in RAM. INFO 2026-06-08 08:44:43 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:73,503,009 INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1220438 as yet unmatched pairs. 54833 records in RAM. INFO 2026-06-08 08:44:45 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:80,437,946 INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 1217000 as yet unmatched pairs. 51374 records in RAM. INFO 2026-06-08 08:44:46 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:86,618,078 INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 1217038 as yet unmatched pairs. 51388 records in RAM. INFO 2026-06-08 08:44:48 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:103,017,342 INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1212834 as yet unmatched pairs. 47156 records in RAM. INFO 2026-06-08 08:44:50 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:127,551,714 INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1209881 as yet unmatched pairs. 44179 records in RAM. INFO 2026-06-08 08:44:51 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:134,371,578 INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1207089 as yet unmatched pairs. 41352 records in RAM. INFO 2026-06-08 08:44:53 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,155 INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1205202 as yet unmatched pairs. 39445 records in RAM. INFO 2026-06-08 08:44:55 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:140,632,933 INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 1201838 as yet unmatched pairs. 36051 records in RAM. INFO 2026-06-08 08:44:56 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:141,400,260 INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1199598 as yet unmatched pairs. 33795 records in RAM. INFO 2026-06-08 08:44:58 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:146,122,512 INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 1196891 as yet unmatched pairs. 31070 records in RAM. INFO 2026-06-08 08:45:00 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:150,120,925 INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1198714 as yet unmatched pairs. 32873 records in RAM. INFO 2026-06-08 08:45:01 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,172 INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 1210166 as yet unmatched pairs. 44311 records in RAM. INFO 2026-06-08 08:45:03 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,169 INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1206606 as yet unmatched pairs. 40727 records in RAM. INFO 2026-06-08 08:45:05 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:150,719,750 INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1185038 as yet unmatched pairs. 19156 records in RAM. INFO 2026-06-08 08:45:07 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:154,790,770 INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 1182230 as yet unmatched pairs. 16334 records in RAM. INFO 2026-06-08 08:45:09 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:170,385,321 INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 1179896 as yet unmatched pairs. 13985 records in RAM. INFO 2026-06-08 08:45:11 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:172,406,274 INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 1177593 as yet unmatched pairs. 11659 records in RAM. INFO 2026-06-08 08:45:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:177,338,578 INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1175094 as yet unmatched pairs. 9151 records in RAM. INFO 2026-06-08 08:45:14 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:179,707,165 INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 1173015 as yet unmatched pairs. 7056 records in RAM. INFO 2026-06-08 08:45:16 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,112 INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1175279 as yet unmatched pairs. 9313 records in RAM. INFO 2026-06-08 08:45:18 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:181,242,229 INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 1168559 as yet unmatched pairs. 2579 records in RAM. INFO 2026-06-08 08:45:20 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr6:7,230,537 INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 1163957 as yet unmatched pairs. 77153 records in RAM. INFO 2026-06-08 08:45:21 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:12,130,831 INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1160904 as yet unmatched pairs. 74074 records in RAM. INFO 2026-06-08 08:45:23 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:25,581,305 INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1158202 as yet unmatched pairs. 71337 records in RAM. INFO 2026-06-08 08:45:25 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:26,463,310 INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1156027 as yet unmatched pairs. 69159 records in RAM. INFO 2026-06-08 08:45:27 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:29,830,393 INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 1153344 as yet unmatched pairs. 66454 records in RAM. INFO 2026-06-08 08:45:29 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr6:30,602,046 INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 1151250 as yet unmatched pairs. 64352 records in RAM. INFO 2026-06-08 08:45:31 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,246 INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1154585 as yet unmatched pairs. 67675 records in RAM. INFO 2026-06-08 08:45:32 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:31,639,089 INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1145587 as yet unmatched pairs. 58663 records in RAM. INFO 2026-06-08 08:45:34 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,261 INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1143117 as yet unmatched pairs. 56192 records in RAM. INFO 2026-06-08 08:45:35 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,993,540 INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 1141448 as yet unmatched pairs. 54504 records in RAM. INFO 2026-06-08 08:45:37 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:32,188,429 INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 1138810 as yet unmatched pairs. 51855 records in RAM. INFO 2026-06-08 08:45:39 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:33,208,633 INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1135944 as yet unmatched pairs. 48973 records in RAM. INFO 2026-06-08 08:45:40 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:33,670,511 INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1133260 as yet unmatched pairs. 46277 records in RAM. INFO 2026-06-08 08:45:42 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:36,204,729 INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1130427 as yet unmatched pairs. 43422 records in RAM. INFO 2026-06-08 08:45:44 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:42,106,865 INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 1127737 as yet unmatched pairs. 40724 records in RAM. INFO 2026-06-08 08:45:45 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:43,527,644 INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1125025 as yet unmatched pairs. 37995 records in RAM. INFO 2026-06-08 08:45:47 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:47,580,891 INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 1122316 as yet unmatched pairs. 35277 records in RAM. INFO 2026-06-08 08:45:49 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:56,640,587 INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 1120370 as yet unmatched pairs. 33279 records in RAM. INFO 2026-06-08 08:45:51 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:75,133,890 INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1118448 as yet unmatched pairs. 31333 records in RAM. INFO 2026-06-08 08:45:53 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:83,138,786 INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 1114995 as yet unmatched pairs. 27859 records in RAM. INFO 2026-06-08 08:45:55 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr6:98,917,387 INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 1112431 as yet unmatched pairs. 25272 records in RAM. INFO 2026-06-08 08:45:57 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:109,377,919 INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1113613 as yet unmatched pairs. 26421 records in RAM. INFO 2026-06-08 08:45:58 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:116,431,106 INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 1107144 as yet unmatched pairs. 19934 records in RAM. INFO 2026-06-08 08:46:00 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:130,894,976 INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1104802 as yet unmatched pairs. 17580 records in RAM. INFO 2026-06-08 08:46:02 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:137,871,456 INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 1103547 as yet unmatched pairs. 16304 records in RAM. INFO 2026-06-08 08:46:03 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:147,363,421 INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1099498 as yet unmatched pairs. 12238 records in RAM. INFO 2026-06-08 08:46:05 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:152,262,077 INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 1097035 as yet unmatched pairs. 9760 records in RAM. INFO 2026-06-08 08:46:07 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,639 INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 1096245 as yet unmatched pairs. 8945 records in RAM. INFO 2026-06-08 08:46:08 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:160,033,091 INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1091798 as yet unmatched pairs. 4481 records in RAM. INFO 2026-06-08 08:46:10 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:169,228,178 INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1089915 as yet unmatched pairs. 2578 records in RAM. INFO 2026-06-08 08:46:12 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr7:988,392 INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1086055 as yet unmatched pairs. 112117 records in RAM. INFO 2026-06-08 08:46:14 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:2,731,614 INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 1082635 as yet unmatched pairs. 108670 records in RAM. INFO 2026-06-08 08:46:16 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:5,377,550 INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 1081796 as yet unmatched pairs. 107811 records in RAM. INFO 2026-06-08 08:46:17 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,080 INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1105362 as yet unmatched pairs. 131360 records in RAM. INFO 2026-06-08 08:46:19 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,165 INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 1090674 as yet unmatched pairs. 116662 records in RAM. INFO 2026-06-08 08:46:22 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr7:6,036,089 INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 1071090 as yet unmatched pairs. 97062 records in RAM. INFO 2026-06-08 08:46:24 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:17,322,553 INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 1068783 as yet unmatched pairs. 94738 records in RAM. INFO 2026-06-08 08:46:26 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:26,208,433 INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1069154 as yet unmatched pairs. 95090 records in RAM. INFO 2026-06-08 08:46:28 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr7:34,931,548 INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 1063223 as yet unmatched pairs. 89134 records in RAM. INFO 2026-06-08 08:46:30 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:44,058,176 INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 1061066 as yet unmatched pairs. 86958 records in RAM. INFO 2026-06-08 08:46:32 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:44,756,456 INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 1058567 as yet unmatched pairs. 84449 records in RAM. INFO 2026-06-08 08:46:33 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:51,028,777 INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1055172 as yet unmatched pairs. 81039 records in RAM. INFO 2026-06-08 08:46:35 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:64,522,022 INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 1052296 as yet unmatched pairs. 78146 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:73,200,481 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1050947 as yet unmatched pairs. 76755 records in RAM. INFO 2026-06-08 08:46:38 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:74,519,429 INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1049451 as yet unmatched pairs. 75246 records in RAM. INFO 2026-06-08 08:46:40 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:75,879,078 INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1046607 as yet unmatched pairs. 72395 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:77,060,320 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 1043598 as yet unmatched pairs. 69357 records in RAM. INFO 2026-06-08 08:46:43 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:92,038,678 INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1042260 as yet unmatched pairs. 68005 records in RAM. INFO 2026-06-08 08:46:45 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:94,405,209 INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1046754 as yet unmatched pairs. 72482 records in RAM. INFO 2026-06-08 08:46:47 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:94,421,009 INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 1039173 as yet unmatched pairs. 64884 records in RAM. INFO 2026-06-08 08:46:49 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:98,355,025 INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 1033441 as yet unmatched pairs. 59127 records in RAM. INFO 2026-06-08 08:46:51 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr7:100,077,262 INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1030407 as yet unmatched pairs. 56091 records in RAM. INFO 2026-06-08 08:46:53 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr7:100,824,264 INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1027709 as yet unmatched pairs. 53382 records in RAM. INFO 2026-06-08 08:46:55 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,280 INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 1026622 as yet unmatched pairs. 52290 records in RAM. INFO 2026-06-08 08:46:56 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,139 INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 1028647 as yet unmatched pairs. 54310 records in RAM. INFO 2026-06-08 08:46:58 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,656 INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 1025681 as yet unmatched pairs. 51339 records in RAM. INFO 2026-06-08 08:46:59 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,150 INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 1024788 as yet unmatched pairs. 50444 records in RAM. INFO 2026-06-08 08:47:00 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,936 INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 1024113 as yet unmatched pairs. 49769 records in RAM. INFO 2026-06-08 08:47:01 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,294 INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 1025175 as yet unmatched pairs. 50831 records in RAM. INFO 2026-06-08 08:47:02 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,082 INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1024345 as yet unmatched pairs. 50001 records in RAM. INFO 2026-06-08 08:47:03 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,340 INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 1030284 as yet unmatched pairs. 55940 records in RAM. INFO 2026-06-08 08:47:04 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,552 INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1039549 as yet unmatched pairs. 65199 records in RAM. INFO 2026-06-08 08:47:06 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,860 INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 1035626 as yet unmatched pairs. 61262 records in RAM. INFO 2026-06-08 08:48:16 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 69s. Last read position: chr7:100,997,155 INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 1032030 as yet unmatched pairs. 57666 records in RAM. INFO 2026-06-08 08:48:17 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,547 INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 1024832 as yet unmatched pairs. 50465 records in RAM. INFO 2026-06-08 08:48:19 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,930 INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 1039541 as yet unmatched pairs. 65174 records in RAM. INFO 2026-06-08 08:48:20 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,312 INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 1017790 as yet unmatched pairs. 43423 records in RAM. INFO 2026-06-08 08:48:21 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,600 INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 1028455 as yet unmatched pairs. 54088 records in RAM. INFO 2026-06-08 08:48:22 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,915 INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 1016704 as yet unmatched pairs. 42334 records in RAM. INFO 2026-06-08 08:48:23 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,406 INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 1021826 as yet unmatched pairs. 47456 records in RAM. INFO 2026-06-08 08:48:25 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,839 INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 1021212 as yet unmatched pairs. 46841 records in RAM. INFO 2026-06-08 08:48:26 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,293 INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 1014077 as yet unmatched pairs. 39699 records in RAM. INFO 2026-06-08 08:48:27 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,706 INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 1029339 as yet unmatched pairs. 54961 records in RAM. INFO 2026-06-08 08:48:29 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,978 INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 1020288 as yet unmatched pairs. 45908 records in RAM. INFO 2026-06-08 08:48:30 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,339 INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 1018046 as yet unmatched pairs. 43664 records in RAM. INFO 2026-06-08 08:48:32 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,586 INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1008189 as yet unmatched pairs. 33807 records in RAM. INFO 2026-06-08 08:48:33 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,912 INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 1009521 as yet unmatched pairs. 35139 records in RAM. INFO 2026-06-08 08:48:34 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,585 INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 1008065 as yet unmatched pairs. 33683 records in RAM. INFO 2026-06-08 08:48:35 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,533 INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 1004915 as yet unmatched pairs. 30525 records in RAM. INFO 2026-06-08 08:48:37 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,082 INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 1004261 as yet unmatched pairs. 29871 records in RAM. INFO 2026-06-08 08:48:38 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:101,164,062 INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 1002133 as yet unmatched pairs. 27736 records in RAM. INFO 2026-06-08 08:48:39 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr7:102,657,550 INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 1000814 as yet unmatched pairs. 26402 records in RAM. INFO 2026-06-08 08:48:41 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr7:107,929,113 INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 998614 as yet unmatched pairs. 24189 records in RAM. INFO 2026-06-08 08:48:43 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr7:116,771,974 INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 996810 as yet unmatched pairs. 22357 records in RAM. INFO 2026-06-08 08:48:44 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr7:127,703,180 INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 998563 as yet unmatched pairs. 24102 records in RAM. INFO 2026-06-08 08:48:46 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr7:128,838,642 INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 990858 as yet unmatched pairs. 16391 records in RAM. INFO 2026-06-08 08:48:48 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr7:134,950,397 INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 990204 as yet unmatched pairs. 15711 records in RAM. INFO 2026-06-08 08:48:50 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr7:139,283,911 INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 986048 as yet unmatched pairs. 11537 records in RAM. INFO 2026-06-08 08:48:51 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,991 INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 984408 as yet unmatched pairs. 9875 records in RAM. INFO 2026-06-08 08:48:53 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr7:148,819,595 INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 981854 as yet unmatched pairs. 7314 records in RAM. INFO 2026-06-08 08:48:54 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr7:151,064,216 INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 979379 as yet unmatched pairs. 4812 records in RAM. INFO 2026-06-08 08:48:56 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr7:155,706,873 INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 976213 as yet unmatched pairs. 1634 records in RAM. INFO 2026-06-08 08:48:59 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 2s. Last read position: chr8:11,838,503 INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 973695 as yet unmatched pairs. 55829 records in RAM. INFO 2026-06-08 08:49:01 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:22,066,832 INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 971147 as yet unmatched pairs. 53270 records in RAM. INFO 2026-06-08 08:49:03 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:23,571,273 INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 968088 as yet unmatched pairs. 50191 records in RAM. INFO 2026-06-08 08:49:04 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:33,512,283 INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 965498 as yet unmatched pairs. 47562 records in RAM. INFO 2026-06-08 08:49:06 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:38,329,406 INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 963814 as yet unmatched pairs. 45851 records in RAM. INFO 2026-06-08 08:49:08 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr8:38,969,561 INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 960196 as yet unmatched pairs. 42229 records in RAM. INFO 2026-06-08 08:49:10 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:47,902,594 INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 957515 as yet unmatched pairs. 39531 records in RAM. INFO 2026-06-08 08:49:11 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:63,024,153 INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 955247 as yet unmatched pairs. 37241 records in RAM. INFO 2026-06-08 08:49:13 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr8:70,156,650 INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 952437 as yet unmatched pairs. 34404 records in RAM. INFO 2026-06-08 08:49:15 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:91,076,537 INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 950073 as yet unmatched pairs. 32020 records in RAM. INFO 2026-06-08 08:49:16 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:99,501,772 INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 947761 as yet unmatched pairs. 29676 records in RAM. INFO 2026-06-08 08:49:18 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr8:102,272,667 INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 945419 as yet unmatched pairs. 27314 records in RAM. INFO 2026-06-08 08:49:20 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr8:119,586,271 INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 942615 as yet unmatched pairs. 24494 records in RAM. INFO 2026-06-08 08:49:21 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,556 INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 942291 as yet unmatched pairs. 24154 records in RAM. INFO 2026-06-08 08:49:23 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr8:140,706,156 INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 937307 as yet unmatched pairs. 19147 records in RAM. INFO 2026-06-08 08:49:25 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,839,059 INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 934138 as yet unmatched pairs. 15958 records in RAM. INFO 2026-06-08 08:49:26 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,879 INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 933764 as yet unmatched pairs. 15578 records in RAM. INFO 2026-06-08 08:49:27 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,625 INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 932839 as yet unmatched pairs. 14653 records in RAM. INFO 2026-06-08 08:49:28 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,407 INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 930908 as yet unmatched pairs. 12717 records in RAM. INFO 2026-06-08 08:49:29 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,793 INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 929526 as yet unmatched pairs. 11333 records in RAM. INFO 2026-06-08 08:49:30 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,267 INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 928954 as yet unmatched pairs. 10755 records in RAM. INFO 2026-06-08 08:49:32 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,925,393 INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 924609 as yet unmatched pairs. 6398 records in RAM. INFO 2026-06-08 08:49:35 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr8:144,313,884 INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 921314 as yet unmatched pairs. 3085 records in RAM. INFO 2026-06-08 08:49:37 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr9:712,455 INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 918091 as yet unmatched pairs. 62640 records in RAM. INFO 2026-06-08 08:49:39 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,249 INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 917326 as yet unmatched pairs. 61830 records in RAM. INFO 2026-06-08 08:49:41 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr9:33,030,611 INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 912947 as yet unmatched pairs. 57428 records in RAM. INFO 2026-06-08 08:49:43 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr9:35,101,190 INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 910397 as yet unmatched pairs. 54871 records in RAM. INFO 2026-06-08 08:49:44 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:35,750,253 INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 907561 as yet unmatched pairs. 52012 records in RAM. INFO 2026-06-08 08:49:46 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr9:69,226,100 INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 905548 as yet unmatched pairs. 49975 records in RAM. INFO 2026-06-08 08:49:48 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:83,389,667 INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 902597 as yet unmatched pairs. 47012 records in RAM. INFO 2026-06-08 08:49:49 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:91,726,671 INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 900149 as yet unmatched pairs. 44560 records in RAM. INFO 2026-06-08 08:49:51 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr9:94,098,325 INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 897322 as yet unmatched pairs. 41713 records in RAM. INFO 2026-06-08 08:49:52 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr9:99,062,270 INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 895443 as yet unmatched pairs. 39813 records in RAM. INFO 2026-06-08 08:49:54 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr9:109,073,423 INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 892388 as yet unmatched pairs. 36749 records in RAM. INFO 2026-06-08 08:49:56 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr9:113,595,694 INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 889553 as yet unmatched pairs. 33894 records in RAM. INFO 2026-06-08 08:49:58 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,595 INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 888576 as yet unmatched pairs. 32913 records in RAM. INFO 2026-06-08 08:49:59 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr9:122,390,219 INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 883967 as yet unmatched pairs. 28295 records in RAM. INFO 2026-06-08 08:50:01 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr9:127,444,356 INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 881303 as yet unmatched pairs. 25602 records in RAM. INFO 2026-06-08 08:50:03 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr9:128,254,581 INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 878283 as yet unmatched pairs. 22559 records in RAM. INFO 2026-06-08 08:50:04 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr9:128,946,748 INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 875463 as yet unmatched pairs. 19730 records in RAM. INFO 2026-06-08 08:50:06 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr9:130,880,136 INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 874598 as yet unmatched pairs. 18854 records in RAM. INFO 2026-06-08 08:50:08 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr9:132,402,199 INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 869906 as yet unmatched pairs. 14134 records in RAM. INFO 2026-06-08 08:50:09 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:134,690,971 INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 867324 as yet unmatched pairs. 11539 records in RAM. INFO 2026-06-08 08:50:11 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr9:136,116,757 INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 864093 as yet unmatched pairs. 8291 records in RAM. INFO 2026-06-08 08:50:12 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr9:136,800,431 INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 861140 as yet unmatched pairs. 5329 records in RAM. INFO 2026-06-08 08:50:14 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr9:137,241,395 INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 858184 as yet unmatched pairs. 2363 records in RAM. INFO 2026-06-08 08:50:17 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr10:3,781,741 INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 856470 as yet unmatched pairs. 49741 records in RAM. INFO 2026-06-08 08:50:19 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr10:13,125,557 INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 852456 as yet unmatched pairs. 45695 records in RAM. INFO 2026-06-08 08:50:21 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr10:24,521,821 INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 850104 as yet unmatched pairs. 43321 records in RAM. INFO 2026-06-08 08:50:24 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr10:30,017,726 INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 847186 as yet unmatched pairs. 40391 records in RAM. INFO 2026-06-08 08:50:25 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr10:32,037,317 INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 847074 as yet unmatched pairs. 40257 records in RAM. INFO 2026-06-08 08:50:27 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr10:35,641,043 INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 842429 as yet unmatched pairs. 35600 records in RAM. INFO 2026-06-08 08:50:28 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr10:46,016,562 INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 843282 as yet unmatched pairs. 36436 records in RAM. INFO 2026-06-08 08:50:30 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr10:59,792,939 INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 838988 as yet unmatched pairs. 32126 records in RAM. INFO 2026-06-08 08:50:31 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr10:69,392,288 INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 835688 as yet unmatched pairs. 28813 records in RAM. INFO 2026-06-08 08:50:33 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:73,530,239 INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 833022 as yet unmatched pairs. 26130 records in RAM. INFO 2026-06-08 08:50:35 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr10:78,033,890 INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 831176 as yet unmatched pairs. 24259 records in RAM. INFO 2026-06-08 08:50:36 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr10:87,051,861 INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 828990 as yet unmatched pairs. 22060 records in RAM. INFO 2026-06-08 08:50:38 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr10:92,479,357 INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 825706 as yet unmatched pairs. 18764 records in RAM. INFO 2026-06-08 08:50:41 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr10:96,527,480 INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 824962 as yet unmatched pairs. 17999 records in RAM. INFO 2026-06-08 08:50:43 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:101,002,680 INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 820956 as yet unmatched pairs. 13988 records in RAM. INFO 2026-06-08 08:50:44 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr10:103,093,287 INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 818165 as yet unmatched pairs. 11188 records in RAM. INFO 2026-06-08 08:50:46 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr10:112,408,421 INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 815644 as yet unmatched pairs. 8637 records in RAM. INFO 2026-06-08 08:50:48 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr10:119,542,590 INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 812709 as yet unmatched pairs. 5687 records in RAM. INFO 2026-06-08 08:50:49 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr10:122,603,119 INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 810992 as yet unmatched pairs. 3960 records in RAM. INFO 2026-06-08 08:50:51 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr10:129,766,895 INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 808327 as yet unmatched pairs. 1273 records in RAM. INFO 2026-06-08 08:50:53 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr11:319,763 INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 813636 as yet unmatched pairs. 90455 records in RAM. INFO 2026-06-08 08:50:55 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:619,103 INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 802910 as yet unmatched pairs. 79727 records in RAM. INFO 2026-06-08 08:50:57 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr11:1,248,900 INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 800442 as yet unmatched pairs. 77245 records in RAM. INFO 2026-06-08 08:50:59 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:3,088,285 INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 797416 as yet unmatched pairs. 74204 records in RAM. INFO 2026-06-08 08:51:00 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:7,987,356 INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 794325 as yet unmatched pairs. 71109 records in RAM. INFO 2026-06-08 08:51:02 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:10,803,036 INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 792994 as yet unmatched pairs. 69772 records in RAM. INFO 2026-06-08 08:51:04 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:17,351,953 INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 788925 as yet unmatched pairs. 65691 records in RAM. INFO 2026-06-08 08:51:06 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:33,717,444 INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 787157 as yet unmatched pairs. 63916 records in RAM. INFO 2026-06-08 08:51:08 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:45,924,872 INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 783697 as yet unmatched pairs. 60436 records in RAM. INFO 2026-06-08 08:51:09 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:47,358,915 INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 781387 as yet unmatched pairs. 58114 records in RAM. INFO 2026-06-08 08:51:11 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:57,741,851 INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 778846 as yet unmatched pairs. 55555 records in RAM. INFO 2026-06-08 08:51:13 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:61,367,917 INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 776225 as yet unmatched pairs. 52926 records in RAM. INFO 2026-06-08 08:51:14 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,373 INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 775298 as yet unmatched pairs. 51990 records in RAM. INFO 2026-06-08 08:51:16 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:62,530,842 INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 773097 as yet unmatched pairs. 49786 records in RAM. INFO 2026-06-08 08:51:18 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:62,753,114 INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 768813 as yet unmatched pairs. 45498 records in RAM. INFO 2026-06-08 08:51:19 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:64,341,268 INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 765947 as yet unmatched pairs. 42599 records in RAM. INFO 2026-06-08 08:51:21 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:65,321,217 INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 762907 as yet unmatched pairs. 39554 records in RAM. INFO 2026-06-08 08:51:24 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr11:65,658,737 INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 761977 as yet unmatched pairs. 38559 records in RAM. INFO 2026-06-08 08:51:26 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:66,437,166 INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 756921 as yet unmatched pairs. 33498 records in RAM. INFO 2026-06-08 08:51:27 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:67,584,701 INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 756395 as yet unmatched pairs. 32966 records in RAM. INFO 2026-06-08 08:51:29 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,969 INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 751632 as yet unmatched pairs. 28192 records in RAM. INFO 2026-06-08 08:51:31 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr11:72,237,328 INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 747809 as yet unmatched pairs. 24358 records in RAM. INFO 2026-06-08 08:51:32 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:75,400,692 INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 745945 as yet unmatched pairs. 22481 records in RAM. INFO 2026-06-08 08:51:34 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:82,689,642 INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 742690 as yet unmatched pairs. 19221 records in RAM. INFO 2026-06-08 08:51:35 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr11:95,979,893 INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 739614 as yet unmatched pairs. 16133 records in RAM. INFO 2026-06-08 08:51:37 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr11:102,842,466 INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 737507 as yet unmatched pairs. 14013 records in RAM. INFO 2026-06-08 08:51:39 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr11:116,863,765 INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 734182 as yet unmatched pairs. 10678 records in RAM. INFO 2026-06-08 08:51:41 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr11:118,601,445 INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 731499 as yet unmatched pairs. 7990 records in RAM. INFO 2026-06-08 08:51:43 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr11:119,678,666 INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 729719 as yet unmatched pairs. 6207 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:125,614,085 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 726290 as yet unmatched pairs. 2765 records in RAM. INFO 2026-06-08 08:51:47 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:135,019,954 INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 723531 as yet unmatched pairs. 0 records in RAM. INFO 2026-06-08 08:51:49 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr12:5,983,155 INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 721670 as yet unmatched pairs. 72140 records in RAM. INFO 2026-06-08 08:51:51 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:6,601,653 INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 718525 as yet unmatched pairs. 68993 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:7,070,201 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 717496 as yet unmatched pairs. 67953 records in RAM. INFO 2026-06-08 08:51:54 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:9,080,150 INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 714856 as yet unmatched pairs. 65302 records in RAM. INFO 2026-06-08 08:51:56 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,477 INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 711219 as yet unmatched pairs. 61645 records in RAM. INFO 2026-06-08 08:51:58 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:24,849,854 INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 708233 as yet unmatched pairs. 58653 records in RAM. INFO 2026-06-08 08:51:59 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:43,797,821 INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 706448 as yet unmatched pairs. 56848 records in RAM. INFO 2026-06-08 08:52:01 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:49,030,729 INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 703494 as yet unmatched pairs. 53893 records in RAM. INFO 2026-06-08 08:52:03 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:49,494,804 INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 701012 as yet unmatched pairs. 51400 records in RAM. INFO 2026-06-08 08:52:04 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:52,052,617 INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 698752 as yet unmatched pairs. 49118 records in RAM. INFO 2026-06-08 08:52:06 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:53,253,093 INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 695665 as yet unmatched pairs. 46025 records in RAM. INFO 2026-06-08 08:52:09 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 3s. Last read position: chr12:54,282,652 INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 693795 as yet unmatched pairs. 44148 records in RAM. INFO 2026-06-08 08:52:11 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr12:56,088,630 INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 690926 as yet unmatched pairs. 41270 records in RAM. INFO 2026-06-08 08:52:14 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr12:56,431,582 INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 687877 as yet unmatched pairs. 38216 records in RAM. INFO 2026-06-08 08:52:15 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,833 INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 689392 as yet unmatched pairs. 39723 records in RAM. INFO 2026-06-08 08:52:18 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr12:57,181,282 INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 683574 as yet unmatched pairs. 33898 records in RAM. INFO 2026-06-08 08:52:20 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:57,525,810 INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 680205 as yet unmatched pairs. 30520 records in RAM. INFO 2026-06-08 08:52:21 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:65,463,239 INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 677392 as yet unmatched pairs. 27678 records in RAM. INFO 2026-06-08 08:52:23 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:71,782,060 INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 675239 as yet unmatched pairs. 25517 records in RAM. INFO 2026-06-08 08:52:25 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:91,146,170 INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 673517 as yet unmatched pairs. 23785 records in RAM. INFO 2026-06-08 08:52:26 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:100,058,998 INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 670053 as yet unmatched pairs. 20315 records in RAM. INFO 2026-06-08 08:52:28 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:107,704,686 INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 667765 as yet unmatched pairs. 18016 records in RAM. INFO 2026-06-08 08:52:30 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:111,446,605 INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 664959 as yet unmatched pairs. 15186 records in RAM. INFO 2026-06-08 08:52:31 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:113,320,406 INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 662218 as yet unmatched pairs. 12430 records in RAM. INFO 2026-06-08 08:52:33 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr12:120,224,321 INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 659926 as yet unmatched pairs. 10122 records in RAM. INFO 2026-06-08 08:52:35 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:122,361,148 INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 657090 as yet unmatched pairs. 7273 records in RAM. INFO 2026-06-08 08:52:36 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:124,356,675 INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 654351 as yet unmatched pairs. 4529 records in RAM. INFO 2026-06-08 08:52:38 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:132,571,403 INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 651355 as yet unmatched pairs. 1520 records in RAM. INFO 2026-06-08 08:52:40 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr13:20,006,437 INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 650993 as yet unmatched pairs. 35513 records in RAM. INFO 2026-06-08 08:52:41 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr13:21,413,752 INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 648087 as yet unmatched pairs. 32601 records in RAM. INFO 2026-06-08 08:52:43 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr13:26,393,366 INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 643917 as yet unmatched pairs. 28406 records in RAM. INFO 2026-06-08 08:52:45 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr13:28,722,723 INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 641137 as yet unmatched pairs. 25596 records in RAM. INFO 2026-06-08 08:52:48 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr13:36,949,976 INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 639264 as yet unmatched pairs. 23717 records in RAM. INFO 2026-06-08 08:52:49 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr13:39,724,506 INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 636924 as yet unmatched pairs. 21370 records in RAM. INFO 2026-06-08 08:52:51 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr13:44,434,637 INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 635776 as yet unmatched pairs. 20206 records in RAM. INFO 2026-06-08 08:52:52 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr13:49,701,774 INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 631879 as yet unmatched pairs. 16293 records in RAM. INFO 2026-06-08 08:52:54 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr13:75,849,140 INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 629363 as yet unmatched pairs. 13758 records in RAM. INFO 2026-06-08 08:52:56 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr13:98,475,249 INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 626782 as yet unmatched pairs. 11168 records in RAM. INFO 2026-06-08 08:52:58 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr13:110,163,483 INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 624509 as yet unmatched pairs. 8877 records in RAM. INFO 2026-06-08 08:53:00 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr13:110,430,573 INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 622091 as yet unmatched pairs. 6446 records in RAM. INFO 2026-06-08 08:53:02 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr13:112,805,016 INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 617953 as yet unmatched pairs. 2286 records in RAM. INFO 2026-06-08 08:53:04 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr14:20,801,850 INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 614999 as yet unmatched pairs. 46537 records in RAM. INFO 2026-06-08 08:53:06 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr14:22,875,730 INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 612802 as yet unmatched pairs. 44333 records in RAM. INFO 2026-06-08 08:53:08 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr14:24,182,392 INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 609256 as yet unmatched pairs. 40768 records in RAM. INFO 2026-06-08 08:53:09 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr14:34,435,265 INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 606507 as yet unmatched pairs. 38003 records in RAM. INFO 2026-06-08 08:53:11 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,646 INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 604255 as yet unmatched pairs. 35721 records in RAM. INFO 2026-06-08 08:53:12 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:55,352,315 INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 601776 as yet unmatched pairs. 33223 records in RAM. INFO 2026-06-08 08:53:14 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:64,119,469 INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 599360 as yet unmatched pairs. 30779 records in RAM. INFO 2026-06-08 08:53:16 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr14:68,874,849 INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 597083 as yet unmatched pairs. 28487 records in RAM. INFO 2026-06-08 08:53:17 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr14:71,733,706 INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 593667 as yet unmatched pairs. 25044 records in RAM. INFO 2026-06-08 08:53:19 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:75,106,633 INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 590859 as yet unmatched pairs. 22228 records in RAM. INFO 2026-06-08 08:53:21 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr14:89,412,113 INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 588400 as yet unmatched pairs. 19753 records in RAM. INFO 2026-06-08 08:53:24 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr14:95,193,256 INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 585662 as yet unmatched pairs. 16995 records in RAM. INFO 2026-06-08 08:53:25 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr14:102,034,097 INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 583153 as yet unmatched pairs. 14468 records in RAM. INFO 2026-06-08 08:53:27 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr14:104,701,550 INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 580463 as yet unmatched pairs. 11769 records in RAM. INFO 2026-06-08 08:53:28 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:104,950,038 INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 578971 as yet unmatched pairs. 10273 records in RAM. INFO 2026-06-08 08:53:30 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,241 INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 578241 as yet unmatched pairs. 9539 records in RAM. INFO 2026-06-08 08:53:31 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,362 INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 579034 as yet unmatched pairs. 10323 records in RAM. INFO 2026-06-08 08:53:33 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,345 INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 578374 as yet unmatched pairs. 9653 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr14:105,770,688 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 571448 as yet unmatched pairs. 2720 records in RAM. INFO 2026-06-08 08:53:36 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:28,236,990 INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 567491 as yet unmatched pairs. 44958 records in RAM. INFO 2026-06-08 08:53:37 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,920 INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 568962 as yet unmatched pairs. 46421 records in RAM. INFO 2026-06-08 08:53:39 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr15:39,581,180 INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 563659 as yet unmatched pairs. 41112 records in RAM. INFO 2026-06-08 08:53:41 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:40,465,376 INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 560255 as yet unmatched pairs. 37705 records in RAM. INFO 2026-06-08 08:53:43 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:42,227,758 INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 557343 as yet unmatched pairs. 34785 records in RAM. INFO 2026-06-08 08:53:45 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr15:43,769,625 INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 556150 as yet unmatched pairs. 33591 records in RAM. INFO 2026-06-08 08:53:47 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 2s. Last read position: chr15:48,463,096 INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 552558 as yet unmatched pairs. 29996 records in RAM. INFO 2026-06-08 08:53:49 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr15:52,609,803 INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 549666 as yet unmatched pairs. 27094 records in RAM. INFO 2026-06-08 08:53:51 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr15:60,351,734 INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 548928 as yet unmatched pairs. 26355 records in RAM. INFO 2026-06-08 08:53:52 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:63,678,209 INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 544646 as yet unmatched pairs. 22060 records in RAM. INFO 2026-06-08 08:53:54 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr15:66,502,658 INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 542854 as yet unmatched pairs. 20253 records in RAM. INFO 2026-06-08 08:53:55 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr15:72,218,973 INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 540233 as yet unmatched pairs. 17623 records in RAM. INFO 2026-06-08 08:53:57 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr15:74,180,130 INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 536462 as yet unmatched pairs. 13847 records in RAM. INFO 2026-06-08 08:53:58 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr15:77,070,837 INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 533540 as yet unmatched pairs. 10917 records in RAM. INFO 2026-06-08 08:54:00 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr15:82,676,545 INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 530955 as yet unmatched pairs. 8324 records in RAM. INFO 2026-06-08 08:54:02 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:88,909,825 INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 529822 as yet unmatched pairs. 7185 records in RAM. INFO 2026-06-08 08:54:03 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr15:90,949,347 INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 525903 as yet unmatched pairs. 3266 records in RAM. INFO 2026-06-08 08:54:05 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr15:101,235,149 INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 523259 as yet unmatched pairs. 604 records in RAM. INFO 2026-06-08 08:54:07 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr16:715,888 INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 519917 as yet unmatched pairs. 71009 records in RAM. INFO 2026-06-08 08:54:08 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:1,992,192 INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 516488 as yet unmatched pairs. 67572 records in RAM. INFO 2026-06-08 08:54:10 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,530,246 INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 513512 as yet unmatched pairs. 64595 records in RAM. INFO 2026-06-08 08:54:11 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,855,636 INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 511042 as yet unmatched pairs. 62120 records in RAM. INFO 2026-06-08 08:54:13 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:4,365,432 INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 508074 as yet unmatched pairs. 59141 records in RAM. INFO 2026-06-08 08:54:14 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:11,516,051 INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 505045 as yet unmatched pairs. 56106 records in RAM. INFO 2026-06-08 08:54:16 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr16:14,926,090 INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 503417 as yet unmatched pairs. 54476 records in RAM. INFO 2026-06-08 08:54:18 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:15,721,013 INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 503834 as yet unmatched pairs. 54887 records in RAM. INFO 2026-06-08 08:54:19 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:16,232,765 INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 498691 as yet unmatched pairs. 49742 records in RAM. INFO 2026-06-08 08:54:21 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,879 INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 498212 as yet unmatched pairs. 49255 records in RAM. INFO 2026-06-08 08:54:23 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr16:19,021,640 INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 496187 as yet unmatched pairs. 47224 records in RAM. INFO 2026-06-08 08:54:24 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:21,473,126 INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 494872 as yet unmatched pairs. 45896 records in RAM. INFO 2026-06-08 08:54:26 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:22,474,217 INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 493290 as yet unmatched pairs. 44314 records in RAM. INFO 2026-06-08 08:54:27 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:24,789,328 INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 492668 as yet unmatched pairs. 43690 records in RAM. INFO 2026-06-08 08:54:29 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:28,727,184 INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 489965 as yet unmatched pairs. 40978 records in RAM. INFO 2026-06-08 08:54:30 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,839 INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 490240 as yet unmatched pairs. 41251 records in RAM. INFO 2026-06-08 08:54:32 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:29,925,878 INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 486388 as yet unmatched pairs. 37395 records in RAM. INFO 2026-06-08 08:54:33 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:30,239,299 INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 484586 as yet unmatched pairs. 35589 records in RAM. INFO 2026-06-08 08:54:35 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:30,892,841 INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 481952 as yet unmatched pairs. 32951 records in RAM. INFO 2026-06-08 08:54:37 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:31,201,598 INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 479493 as yet unmatched pairs. 30484 records in RAM. INFO 2026-06-08 08:54:38 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr16:51,646,316 INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 477072 as yet unmatched pairs. 28057 records in RAM. INFO 2026-06-08 08:54:40 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:56,936,746 INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 474156 as yet unmatched pairs. 25138 records in RAM. INFO 2026-06-08 08:54:41 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr16:64,947,626 INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 471426 as yet unmatched pairs. 22396 records in RAM. INFO 2026-06-08 08:54:43 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:67,654,828 INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 467768 as yet unmatched pairs. 18736 records in RAM. INFO 2026-06-08 08:54:44 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:69,329,082 INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 465060 as yet unmatched pairs. 16023 records in RAM. INFO 2026-06-08 08:54:46 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:70,918,238 INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 462257 as yet unmatched pairs. 13219 records in RAM. INFO 2026-06-08 08:54:47 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:75,242,792 INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 460384 as yet unmatched pairs. 11345 records in RAM. INFO 2026-06-08 08:54:49 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:85,067,141 INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 456965 as yet unmatched pairs. 7910 records in RAM. INFO 2026-06-08 08:54:50 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:88,658,647 INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 453945 as yet unmatched pairs. 4888 records in RAM. INFO 2026-06-08 08:54:52 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr16:89,630,447 INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 451008 as yet unmatched pairs. 1947 records in RAM. INFO 2026-06-08 08:54:55 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,115 INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 451634 as yet unmatched pairs. 159636 records in RAM. INFO 2026-06-08 08:54:56 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:1,776,717 INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 445936 as yet unmatched pairs. 153938 records in RAM. INFO 2026-06-08 08:54:58 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:4,552,507 INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 442084 as yet unmatched pairs. 150075 records in RAM. INFO 2026-06-08 08:55:00 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:5,559,061 INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 439174 as yet unmatched pairs. 147162 records in RAM. INFO 2026-06-08 08:55:01 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,466,719 INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 436304 as yet unmatched pairs. 144291 records in RAM. INFO 2026-06-08 08:55:03 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr17:7,905,951 INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 434228 as yet unmatched pairs. 142213 records in RAM. INFO 2026-06-08 08:55:05 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:16,026,580 INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 431210 as yet unmatched pairs. 139183 records in RAM. INFO 2026-06-08 08:55:06 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:17,819,611 INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 428475 as yet unmatched pairs. 136442 records in RAM. INFO 2026-06-08 08:55:08 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:27,303,457 INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 426433 as yet unmatched pairs. 134387 records in RAM. INFO 2026-06-08 08:55:09 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr17:29,121,146 INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 423152 as yet unmatched pairs. 131104 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 2s. Last read position: chr17:32,367,916 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 421086 as yet unmatched pairs. 129036 records in RAM. INFO 2026-06-08 08:55:13 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:36,579,292 INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 418618 as yet unmatched pairs. 126559 records in RAM. INFO 2026-06-08 08:55:15 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:38,878,152 INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 416387 as yet unmatched pairs. 124326 records in RAM. INFO 2026-06-08 08:55:17 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,843 INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 413815 as yet unmatched pairs. 121750 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:41,527,862 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 411034 as yet unmatched pairs. 118962 records in RAM. INFO 2026-06-08 08:55:20 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:42,329,626 INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 408475 as yet unmatched pairs. 116395 records in RAM. INFO 2026-06-08 08:55:22 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr17:43,528,585 INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 406207 as yet unmatched pairs. 114125 records in RAM. INFO 2026-06-08 08:55:24 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:45,099,408 INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 401770 as yet unmatched pairs. 109681 records in RAM. INFO 2026-06-08 08:55:25 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:47,665,055 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 399793 as yet unmatched pairs. 107699 records in RAM. INFO 2026-06-08 08:55:27 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,500 INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 410224 as yet unmatched pairs. 118128 records in RAM. INFO 2026-06-08 08:55:29 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,476 INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 400032 as yet unmatched pairs. 107934 records in RAM. INFO 2026-06-08 08:55:30 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014 INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 478066 as yet unmatched pairs. 185968 records in RAM. INFO 2026-06-08 08:55:32 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,882 INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 459526 as yet unmatched pairs. 167426 records in RAM. INFO 2026-06-08 08:55:34 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,101 INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 488311 as yet unmatched pairs. 196210 records in RAM. INFO 2026-06-08 08:55:35 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,772 INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 459123 as yet unmatched pairs. 167022 records in RAM. INFO 2026-06-08 08:56:36 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 60s. Last read position: chr17:50,189,241 INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 425105 as yet unmatched pairs. 133000 records in RAM. INFO 2026-06-08 08:57:53 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 76s. Last read position: chr17:50,189,518 INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 451742 as yet unmatched pairs. 159636 records in RAM. INFO 2026-06-08 08:57:55 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,009 INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 437674 as yet unmatched pairs. 145566 records in RAM. INFO 2026-06-08 08:57:56 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,359 INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 459234 as yet unmatched pairs. 167125 records in RAM. INFO 2026-06-08 08:57:58 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,429 INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 436573 as yet unmatched pairs. 144462 records in RAM. INFO 2026-06-08 08:58:00 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,648 INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 390292 as yet unmatched pairs. 98181 records in RAM. INFO 2026-06-08 08:58:02 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,010 INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 431792 as yet unmatched pairs. 139681 records in RAM. INFO 2026-06-08 08:58:04 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,026 INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 444285 as yet unmatched pairs. 152173 records in RAM. INFO 2026-06-08 08:58:06 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,396 INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 437288 as yet unmatched pairs. 145175 records in RAM. INFO 2026-06-08 08:58:07 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,762 INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 420577 as yet unmatched pairs. 128462 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,291 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 413713 as yet unmatched pairs. 121595 records in RAM. INFO 2026-06-08 08:58:11 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,638 INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 405760 as yet unmatched pairs. 113628 records in RAM. INFO 2026-06-08 08:58:13 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,188 INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 453866 as yet unmatched pairs. 161728 records in RAM. INFO 2026-06-08 08:58:15 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,622 INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 441645 as yet unmatched pairs. 149502 records in RAM. INFO 2026-06-08 08:58:17 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,733 INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 404162 as yet unmatched pairs. 112013 records in RAM. INFO 2026-06-08 08:58:19 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,440 INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 361338 as yet unmatched pairs. 69183 records in RAM. INFO 2026-06-08 08:58:21 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,313 INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 355236 as yet unmatched pairs. 63072 records in RAM. INFO 2026-06-08 08:58:23 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,411 INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 335509 as yet unmatched pairs. 43340 records in RAM. INFO 2026-06-08 08:58:24 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:57,105,694 INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 323769 as yet unmatched pairs. 31600 records in RAM. INFO 2026-06-08 08:58:26 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:59,660,571 INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 322962 as yet unmatched pairs. 30790 records in RAM. INFO 2026-06-08 08:58:28 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr17:61,780,895 INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 318385 as yet unmatched pairs. 26211 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr17:64,500,005 INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 316866 as yet unmatched pairs. 24689 records in RAM. INFO 2026-06-08 08:58:31 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:68,512,476 INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 313712 as yet unmatched pairs. 21535 records in RAM. INFO 2026-06-08 08:58:33 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:75,038,985 INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 310965 as yet unmatched pairs. 18787 records in RAM. INFO 2026-06-08 08:58:34 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:75,752,280 INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 307786 as yet unmatched pairs. 15603 records in RAM. INFO 2026-06-08 08:58:36 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr17:77,193,440 INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 304470 as yet unmatched pairs. 12286 records in RAM. INFO 2026-06-08 08:58:38 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:79,942,146 INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 301520 as yet unmatched pairs. 9336 records in RAM. INFO 2026-06-08 08:58:39 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr17:81,510,686 INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 298799 as yet unmatched pairs. 6606 records in RAM. INFO 2026-06-08 08:58:40 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr17:81,922,498 INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 295456 as yet unmatched pairs. 3263 records in RAM. INFO 2026-06-08 08:58:42 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr17:83,085,085 INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 292580 as yet unmatched pairs. 383 records in RAM. INFO 2026-06-08 08:58:44 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr18:12,463,465 INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 289765 as yet unmatched pairs. 8286 records in RAM. INFO 2026-06-08 08:58:47 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr18:34,802,895 INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 287363 as yet unmatched pairs. 5875 records in RAM. INFO 2026-06-08 08:58:49 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr18:55,259,960 INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 284868 as yet unmatched pairs. 3372 records in RAM. INFO 2026-06-08 08:58:51 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr18:76,905,311 INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 282124 as yet unmatched pairs. 619 records in RAM. INFO 2026-06-08 08:58:53 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 2s. Last read position: chr19:808,578 INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 279356 as yet unmatched pairs. 118136 records in RAM. INFO 2026-06-08 08:58:55 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:1,255,577 INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 275762 as yet unmatched pairs. 114539 records in RAM. INFO 2026-06-08 08:58:56 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:2,037,730 INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 272548 as yet unmatched pairs. 111323 records in RAM. INFO 2026-06-08 08:58:58 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:3,381,828 INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 269496 as yet unmatched pairs. 108265 records in RAM. INFO 2026-06-08 08:59:00 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:4,511,836 INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 265877 as yet unmatched pairs. 104643 records in RAM. INFO 2026-06-08 08:59:01 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:5,844,236 INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 263651 as yet unmatched pairs. 102408 records in RAM. INFO 2026-06-08 08:59:03 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:6,712,558 INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 262230 as yet unmatched pairs. 100984 records in RAM. INFO 2026-06-08 08:59:04 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:7,911,097 INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 257051 as yet unmatched pairs. 95805 records in RAM. INFO 2026-06-08 08:59:06 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:10,136,253 INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 254304 as yet unmatched pairs. 93051 records in RAM. INFO 2026-06-08 08:59:08 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,812,358 INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 251328 as yet unmatched pairs. 90068 records in RAM. INFO 2026-06-08 08:59:09 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:11,447,555 INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 248097 as yet unmatched pairs. 86837 records in RAM. INFO 2026-06-08 08:59:10 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:12,797,100 INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 245695 as yet unmatched pairs. 84433 records in RAM. INFO 2026-06-08 08:59:12 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:14,089,140 INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 242112 as yet unmatched pairs. 80847 records in RAM. INFO 2026-06-08 08:59:14 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:15,116,367 INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 239088 as yet unmatched pairs. 77823 records in RAM. INFO 2026-06-08 08:59:17 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr19:15,264,712 INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 236556 as yet unmatched pairs. 75291 records in RAM. INFO 2026-06-08 08:59:18 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:16,847,035 INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 233485 as yet unmatched pairs. 72220 records in RAM. INFO 2026-06-08 08:59:20 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:17,861,439 INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 234095 as yet unmatched pairs. 72823 records in RAM. INFO 2026-06-08 08:59:22 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:18,753,552 INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 227842 as yet unmatched pairs. 66562 records in RAM. INFO 2026-06-08 08:59:23 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:20,776,389 INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 224381 as yet unmatched pairs. 63101 records in RAM. INFO 2026-06-08 08:59:25 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:34,433,348 INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 222527 as yet unmatched pairs. 61246 records in RAM. INFO 2026-06-08 08:59:26 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:35,730,763 INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 218316 as yet unmatched pairs. 57034 records in RAM. INFO 2026-06-08 08:59:28 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:38,380,928 INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 215682 as yet unmatched pairs. 54400 records in RAM. INFO 2026-06-08 08:59:30 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:38,905,012 INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 212536 as yet unmatched pairs. 51254 records in RAM. INFO 2026-06-08 08:59:31 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,895,979 INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 209693 as yet unmatched pairs. 48408 records in RAM. INFO 2026-06-08 08:59:33 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:40,786,856 INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 206800 as yet unmatched pairs. 45512 records in RAM. INFO 2026-06-08 08:59:35 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:41,709,748 INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 209218 as yet unmatched pairs. 47927 records in RAM. INFO 2026-06-08 08:59:36 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,657 INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 212933 as yet unmatched pairs. 51642 records in RAM. INFO 2026-06-08 08:59:37 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:41,756,841 INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 202597 as yet unmatched pairs. 41301 records in RAM. INFO 2026-06-08 08:59:39 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,050 INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 197113 as yet unmatched pairs. 35815 records in RAM. INFO 2026-06-08 08:59:40 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr19:43,503,978 INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 193704 as yet unmatched pairs. 32403 records in RAM. INFO 2026-06-08 08:59:42 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:45,145,252 INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 190600 as yet unmatched pairs. 29298 records in RAM. INFO 2026-06-08 08:59:44 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr19:46,601,425 INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 188742 as yet unmatched pairs. 27437 records in RAM. INFO 2026-06-08 08:59:46 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:47,781,108 INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 185365 as yet unmatched pairs. 24060 records in RAM. INFO 2026-06-08 08:59:48 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:48,969,266 INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 181470 as yet unmatched pairs. 20160 records in RAM. INFO 2026-06-08 08:59:50 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,542,552 INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 178753 as yet unmatched pairs. 17440 records in RAM. INFO 2026-06-08 08:59:51 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:50,000,816 INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 175312 as yet unmatched pairs. 13997 records in RAM. INFO 2026-06-08 08:59:53 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:52,213,089 INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 173186 as yet unmatched pairs. 11868 records in RAM. INFO 2026-06-08 08:59:54 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:54,222,500 INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 169799 as yet unmatched pairs. 8479 records in RAM. INFO 2026-06-08 08:59:56 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,674 INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 169723 as yet unmatched pairs. 8400 records in RAM. INFO 2026-06-08 08:59:57 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:57,808,007 INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 163773 as yet unmatched pairs. 2444 records in RAM. INFO 2026-06-08 08:59:59 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr20:486,377 INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 161402 as yet unmatched pairs. 50194 records in RAM. INFO 2026-06-08 09:00:01 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr20:3,785,092 INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 157802 as yet unmatched pairs. 46594 records in RAM. INFO 2026-06-08 09:00:03 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr20:9,453,361 INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 155252 as yet unmatched pairs. 44036 records in RAM. INFO 2026-06-08 09:00:04 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,439 INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 152529 as yet unmatched pairs. 41312 records in RAM. INFO 2026-06-08 09:00:05 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,945 INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 151853 as yet unmatched pairs. 40630 records in RAM. INFO 2026-06-08 09:00:07 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr20:31,867,119 INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 147058 as yet unmatched pairs. 35835 records in RAM. INFO 2026-06-08 09:00:09 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:34,413,779 INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 145017 as yet unmatched pairs. 33791 records in RAM. INFO 2026-06-08 09:00:11 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr20:35,626,288 INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 142436 as yet unmatched pairs. 31210 records in RAM. INFO 2026-06-08 09:00:13 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr20:36,666,357 INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 139454 as yet unmatched pairs. 28217 records in RAM. INFO 2026-06-08 09:00:14 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr20:41,115,371 INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 136657 as yet unmatched pairs. 25420 records in RAM. INFO 2026-06-08 09:00:16 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr20:44,910,176 INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 133626 as yet unmatched pairs. 22388 records in RAM. INFO 2026-06-08 09:00:18 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr20:45,898,062 INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 131354 as yet unmatched pairs. 20109 records in RAM. INFO 2026-06-08 09:00:19 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr20:48,965,929 INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 128770 as yet unmatched pairs. 17525 records in RAM. INFO 2026-06-08 09:00:21 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr20:50,894,372 INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 125867 as yet unmatched pairs. 14622 records in RAM. INFO 2026-06-08 09:00:22 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,343 INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 123421 as yet unmatched pairs. 12176 records in RAM. INFO 2026-06-08 09:00:24 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr20:62,006,484 INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 119538 as yet unmatched pairs. 8293 records in RAM. INFO 2026-06-08 09:00:25 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr20:62,879,402 INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 116285 as yet unmatched pairs. 5040 records in RAM. INFO 2026-06-08 09:00:27 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr20:63,697,361 INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 113086 as yet unmatched pairs. 1834 records in RAM. INFO 2026-06-08 09:00:29 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,084 INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 110233 as yet unmatched pairs. 21209 records in RAM. INFO 2026-06-08 09:00:30 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr21:14,967,703 INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 109009 as yet unmatched pairs. 19984 records in RAM. INFO 2026-06-08 09:00:31 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr21:32,495,060 INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 106235 as yet unmatched pairs. 17209 records in RAM. INFO 2026-06-08 09:00:33 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr21:37,087,248 INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 103968 as yet unmatched pairs. 14942 records in RAM. INFO 2026-06-08 09:00:34 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr21:41,494,385 INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 101035 as yet unmatched pairs. 12001 records in RAM. INFO 2026-06-08 09:00:36 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr21:44,851,391 INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 99061 as yet unmatched pairs. 10020 records in RAM. INFO 2026-06-08 09:00:37 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr21:45,990,406 INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 95482 as yet unmatched pairs. 6440 records in RAM. INFO 2026-06-08 09:00:39 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr21:46,120,525 INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 94726 as yet unmatched pairs. 5684 records in RAM. INFO 2026-06-08 09:00:42 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr22:17,818,450 INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 88555 as yet unmatched pairs. 36143 records in RAM. INFO 2026-06-08 09:00:43 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr22:20,996,888 INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 85620 as yet unmatched pairs. 33208 records in RAM. INFO 2026-06-08 09:00:45 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,458 INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 82761 as yet unmatched pairs. 30349 records in RAM. INFO 2026-06-08 09:00:46 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr22:29,273,747 INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 80778 as yet unmatched pairs. 28362 records in RAM. INFO 2026-06-08 09:00:48 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr22:30,353,013 INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 77108 as yet unmatched pairs. 24688 records in RAM. INFO 2026-06-08 09:00:49 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr22:35,066,987 INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 74066 as yet unmatched pairs. 21644 records in RAM. INFO 2026-06-08 09:00:51 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr22:36,306,460 INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 73902 as yet unmatched pairs. 21478 records in RAM. INFO 2026-06-08 09:00:53 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr22:37,755,552 INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 68471 as yet unmatched pairs. 16041 records in RAM. INFO 2026-06-08 09:00:54 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr22:39,134,548 INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 65263 as yet unmatched pairs. 12833 records in RAM. INFO 2026-06-08 09:00:56 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr22:41,339,180 INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 62743 as yet unmatched pairs. 10313 records in RAM. INFO 2026-06-08 09:00:57 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr22:43,059,407 INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 59643 as yet unmatched pairs. 7213 records in RAM. INFO 2026-06-08 09:00:59 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,218,222 INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 56606 as yet unmatched pairs. 4176 records in RAM. INFO 2026-06-08 09:01:00 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr22:50,574,406 INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 53137 as yet unmatched pairs. 704 records in RAM. INFO 2026-06-08 09:01:02 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:3,321,460 INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 50603 as yet unmatched pairs. 45798 records in RAM. INFO 2026-06-08 09:01:04 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chrX:16,947,100 INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 47592 as yet unmatched pairs. 42787 records in RAM. INFO 2026-06-08 09:01:05 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chrX:32,697,963 INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 45281 as yet unmatched pairs. 40471 records in RAM. INFO 2026-06-08 09:01:07 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chrX:41,586,949 INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 42910 as yet unmatched pairs. 38100 records in RAM. INFO 2026-06-08 09:01:09 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chrX:47,586,566 INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 48860 as yet unmatched pairs. 44049 records in RAM. INFO 2026-06-08 09:01:11 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chrX:49,113,741 INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 37083 as yet unmatched pairs. 32272 records in RAM. INFO 2026-06-08 09:01:13 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chrX:53,552,882 INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 34572 as yet unmatched pairs. 29761 records in RAM. INFO 2026-06-08 09:01:14 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chrX:65,729,693 INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 32611 as yet unmatched pairs. 27800 records in RAM. INFO 2026-06-08 09:01:16 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chrX:71,366,409 INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 29231 as yet unmatched pairs. 24420 records in RAM. INFO 2026-06-08 09:01:18 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chrX:77,664,645 INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 27982 as yet unmatched pairs. 23171 records in RAM. INFO 2026-06-08 09:01:20 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,761 INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 33169 as yet unmatched pairs. 28358 records in RAM. INFO 2026-06-08 09:01:22 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chrX:118,639,598 INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 22232 as yet unmatched pairs. 17421 records in RAM. INFO 2026-06-08 09:01:23 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: chrX:130,013,450 INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 20237 as yet unmatched pairs. 15426 records in RAM. INFO 2026-06-08 09:01:25 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chrX:150,727,184 INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 17439 as yet unmatched pairs. 12628 records in RAM. INFO 2026-06-08 09:01:26 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chrX:153,959,964 INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 14802 as yet unmatched pairs. 9987 records in RAM. INFO 2026-06-08 09:01:28 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chrX:154,357,496 INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 12049 as yet unmatched pairs. 7234 records in RAM. INFO 2026-06-08 09:01:30 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,430 INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 9344 as yet unmatched pairs. 4529 records in RAM. INFO 2026-06-08 09:01:32 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chrX:154,639,951 INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 5706 as yet unmatched pairs. 891 records in RAM. INFO 2026-06-08 09:01:33 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,199 INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 3735 as yet unmatched pairs. 1440 records in RAM. INFO 2026-06-08 09:01:34 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,090 INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 43 as yet unmatched pairs. 33 records in RAM. INFO 2026-06-08 09:01:34 MarkDuplicates Read 643213028 records. 0 pairs never matched. INFO 2026-06-08 09:02:26 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140200; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:02:26 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:02:30 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:02:30 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1754 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,998 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1214 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,331 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1178 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,832 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,275 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1884 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,065 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1249 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,422 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1803 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,098 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-08 09:02:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,168 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder Large duplicate set. size = 1725 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,718 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,805 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,255 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder Large duplicate set. size = 1323 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,048 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder Large duplicate set. size = 1289 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,230 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder Large duplicate set. size = 1943 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,780 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder Large duplicate set. size = 1142 INFO 2026-06-08 09:02:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,644 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,675 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1133 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,413 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,591 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,741 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,777 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1313 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,966 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1195 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,715 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 09:02:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,237 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1256 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,157 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 2171 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,821 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,199 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,268 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1386 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,938 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 2082 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,628 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,603 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1921 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,338 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1779 INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,537 INFO 2026-06-08 09:02:52 OpticalDuplicateFinder Large duplicate set. size = 1460 INFO 2026-06-08 09:02:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,176 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder Large duplicate set. size = 2341 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,580 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,203 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder Large duplicate set. size = 1328 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,422 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,704 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,085 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 09:02:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,489 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,194 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,297 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,035 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:02:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,974 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder Large duplicate set. size = 1616 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,052 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder Large duplicate set. size = 1374 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,429 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,208 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder Large duplicate set. size = 1425 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,204 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder Large duplicate set. size = 1132 INFO 2026-06-08 09:03:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,753 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder Large duplicate set. size = 1335 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,546 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder Large duplicate set. size = 2728 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,378 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,417 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder Large duplicate set. size = 2060 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,214 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,470 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder Large duplicate set. size = 1074 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,109 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,011 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:03:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,293 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1348 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,752 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 2136 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,963 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,696 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1368 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,497 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1163 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,222 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1619 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,518 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1086 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,540 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,451 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1168 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,590 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1421 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,551 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1148 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,107 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 2491 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,503 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,847 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1163 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,857 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,327 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1201 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,119 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,640 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1376 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,040 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1101 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,942 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,528 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,227 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,736 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,690 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1758 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,174 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,576 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1376 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,156 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,825 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1221 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,523 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1309 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,902 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1228 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,917 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,708 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1684 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,558 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1002 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,836 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1251 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,317 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,336 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder Large duplicate set. size = 1146 INFO 2026-06-08 09:03:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,738 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1181 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,120 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1289 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,787 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 2211 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,558 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,597 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1074 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,872 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,571 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1185 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,877 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1162 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,089 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,228 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1113 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,836 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,190 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder Large duplicate set. size = 2048 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,929 INFO 2026-06-08 09:03:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,663 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1334 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,204 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1501 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,314 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1680 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,067 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1774 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,646 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1966 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,294 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 2055 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,473 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,673 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1074 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,814 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1122 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,147 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,702 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1354 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,656 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,345 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 2652 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,203 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,169 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1212 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,688 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1443 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,422 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 2060 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,176 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,271 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 2037 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,667 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,836 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,391 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1526 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,045 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 2073 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,398 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,944 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 2397 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,599 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,588 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 3018 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,170 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,376 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,441 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1740 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,900 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1883 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,597 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 3507 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,362 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,304 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,893 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1397 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,924 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1403 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,374 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1178 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,548 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1421 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,224 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1687 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,214 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1706 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,041 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 4371 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,577 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,501 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,337 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,744 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1355 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,656 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1977 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,877 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1836 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,878 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1419 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,851 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder Large duplicate set. size = 1448 INFO 2026-06-08 09:03:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,253 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1306 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,925 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1271 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,603 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1414 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,385 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1338 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,719 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 2028 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,116 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,262 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 2871 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,018 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,773 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 2853 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,931 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,820 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1260 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,003 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1185 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,805 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1815 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,220 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1230 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,783 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1646 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,513 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 2764 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,254 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,770 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1289 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,255 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,189 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1188 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,489 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1078 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,335 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,870 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1144 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,084 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,438 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,143 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1637 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,805 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1506 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,984 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1475 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,872 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 2059 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,513 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,103 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1160 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,233 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1623 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,095 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 1280 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,982 INFO 2026-06-08 09:03:30 OpticalDuplicateFinder Large duplicate set. size = 2476 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,086 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,629 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1922 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,766 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,492 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2110 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,526 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,790 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1619 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,106 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2444 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,895 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,428 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1152 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,410 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 3435 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,387 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,802 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,256 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,870 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1446 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,713 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1244 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,689 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2991 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,604 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,000 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1546 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,259 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2879 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,889 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,059 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 4277 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,589 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,077 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,824 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,776 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,354 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2419 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,338 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,325 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1241 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,378 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 3604 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,242 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,505 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,975 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,538 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,488 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,515 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1593 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,992 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1287 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,958 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,063 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1476 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,669 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1290 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,226 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1402 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,194 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2107 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,866 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,972 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,903 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1711 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,377 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1278 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,653 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,710 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1545 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,062 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 3051 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,800 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,614 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,016 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,513 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1639 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,141 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2358 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,844 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,744 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,912 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 2367 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,839 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,658 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,059 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,852 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1987 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,037 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1127 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,576 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1128 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,921 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1088 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,528 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1707 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,070 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,312 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1120 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,332 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1483 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,771 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,277 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,191 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1325 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,668 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,583 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1326 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,220 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,580 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 2510 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,116 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,594 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 09:03:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,226 INFO 2026-06-08 09:04:00 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:04:00 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:05:02 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:05:05 MarkDuplicates After generateDuplicateIndexes freeMemory: 203852984; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:05:05 MarkDuplicates Marking 315429374 records as duplicates. INFO 2026-06-08 09:05:05 MarkDuplicates Found 23828789 optical duplicate clusters. INFO 2026-06-08 09:05:05 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:05:24 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:19s. Time for last 10,000,000: 19s. Last read position: chr1:23,559,141 INFO 2026-06-08 09:05:42 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 17s. Last read position: chr1:53,796,702 INFO 2026-06-08 09:06:01 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:56s. Time for last 10,000,000: 19s. Last read position: chr1:146,138,397 INFO 2026-06-08 09:06:18 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:13s. Time for last 10,000,000: 17s. Last read position: chr1:160,637,509 INFO 2026-06-08 09:06:36 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 17s. Last read position: chr1:219,987,381 INFO 2026-06-08 09:06:54 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,248 INFO 2026-06-08 09:07:10 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 16s. Last read position: chr2:61,478,871 INFO 2026-06-08 09:07:27 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:22s. Time for last 10,000,000: 17s. Last read position: chr2:119,254,700 INFO 2026-06-08 09:07:44 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:39s. Time for last 10,000,000: 16s. Last read position: chr2:197,416,796 INFO 2026-06-08 09:08:00 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 16s. Last read position: chr2:215,386,908 INFO 2026-06-08 09:08:16 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:11s. Time for last 10,000,000: 16s. Last read position: chr2:218,343,548 INFO 2026-06-08 09:08:33 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:27s. Time for last 10,000,000: 16s. Last read position: chr3:23,967,954 INFO 2026-06-08 09:08:49 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 16s. Last read position: chr3:56,623,203 INFO 2026-06-08 09:09:05 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:00s. Time for last 10,000,000: 16s. Last read position: chr3:149,938,719 INFO 2026-06-08 09:09:21 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:16s. Time for last 10,000,000: 16s. Last read position: chr4:17,886,147 INFO 2026-06-08 09:09:38 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:33s. Time for last 10,000,000: 16s. Last read position: chr4:155,711,188 INFO 2026-06-08 09:09:56 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:50s. Time for last 10,000,000: 17s. Last read position: chr5:86,618,078 INFO 2026-06-08 09:10:12 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 16s. Last read position: chr5:150,405,169 INFO 2026-06-08 09:10:28 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 15s. Last read position: chr6:12,130,831 INFO 2026-06-08 09:10:44 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 15s. Last read position: chr6:33,208,633 INFO 2026-06-08 09:11:00 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 16s. Last read position: chr6:109,377,919 INFO 2026-06-08 09:11:16 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:11s. Time for last 10,000,000: 16s. Last read position: chr7:2,731,614 INFO 2026-06-08 09:11:32 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 15s. Last read position: chr7:51,028,777 INFO 2026-06-08 09:11:48 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:43s. Time for last 10,000,000: 16s. Last read position: chr7:100,077,262 INFO 2026-06-08 09:12:03 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 15s. Last read position: chr7:100,996,552 INFO 2026-06-08 09:12:19 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 15s. Last read position: chr7:101,000,293 INFO 2026-06-08 09:12:35 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 15s. Last read position: chr7:102,657,550 INFO 2026-06-08 09:12:51 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 16s. Last read position: chr7:155,706,873 INFO 2026-06-08 09:13:07 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:02s. Time for last 10,000,000: 16s. Last read position: chr8:91,076,537 INFO 2026-06-08 09:13:23 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 15s. Last read position: chr8:143,865,793 INFO 2026-06-08 09:13:39 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:34s. Time for last 10,000,000: 15s. Last read position: chr9:83,389,667 INFO 2026-06-08 09:13:55 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:50s. Time for last 10,000,000: 16s. Last read position: chr9:128,946,748 INFO 2026-06-08 09:14:12 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:06s. Time for last 10,000,000: 16s. Last read position: chr10:30,017,726 INFO 2026-06-08 09:14:28 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 16s. Last read position: chr10:96,527,480 INFO 2026-06-08 09:14:45 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 16s. Last read position: chr11:3,088,285 INFO 2026-06-08 09:15:01 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 16s. Last read position: chr11:62,530,842 INFO 2026-06-08 09:15:17 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr11:82,689,642 INFO 2026-06-08 09:15:34 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:29s. Time for last 10,000,000: 16s. Last read position: chr12:7,070,201 INFO 2026-06-08 09:15:50 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 16s. Last read position: chr12:56,088,630 INFO 2026-06-08 09:16:06 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:01s. Time for last 10,000,000: 16s. Last read position: chr12:111,446,605 INFO 2026-06-08 09:16:22 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 16s. Last read position: chr13:36,949,976 INFO 2026-06-08 09:16:39 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:34s. Time for last 10,000,000: 16s. Last read position: chr14:22,875,730 INFO 2026-06-08 09:16:55 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 16s. Last read position: chr14:95,193,256 INFO 2026-06-08 09:17:12 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:07s. Time for last 10,000,000: 16s. Last read position: chr15:39,581,180 INFO 2026-06-08 09:17:28 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 16s. Last read position: chr15:74,180,130 INFO 2026-06-08 09:17:45 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:39s. Time for last 10,000,000: 16s. Last read position: chr16:4,365,432 INFO 2026-06-08 09:18:01 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 16s. Last read position: chr16:28,727,184 INFO 2026-06-08 09:18:17 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:12s. Time for last 10,000,000: 16s. Last read position: chr16:69,329,082 INFO 2026-06-08 09:18:33 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:28s. Time for last 10,000,000: 16s. Last read position: chr17:7,466,719 INFO 2026-06-08 09:18:49 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 15s. Last read position: chr17:41,527,862 INFO 2026-06-08 09:19:05 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:00s. Time for last 10,000,000: 15s. Last read position: chr17:50,188,772 INFO 2026-06-08 09:19:21 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 15s. Last read position: chr17:50,194,762 INFO 2026-06-08 09:19:37 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 16s. Last read position: chr17:59,660,571 INFO 2026-06-08 09:19:53 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 16s. Last read position: chr17:83,085,085 INFO 2026-06-08 09:20:10 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 16s. Last read position: chr19:5,844,236 INFO 2026-06-08 09:20:25 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:20s. Time for last 10,000,000: 15s. Last read position: chr19:16,847,035 INFO 2026-06-08 09:20:41 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:36s. Time for last 10,000,000: 15s. Last read position: chr19:41,709,748 INFO 2026-06-08 09:20:57 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:52s. Time for last 10,000,000: 15s. Last read position: chr19:50,000,816 INFO 2026-06-08 09:21:13 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:08s. Time for last 10,000,000: 15s. Last read position: chr20:31,867,119 INFO 2026-06-08 09:21:29 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:23s. Time for last 10,000,000: 15s. Last read position: chr20:62,006,484 INFO 2026-06-08 09:21:44 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:39s. Time for last 10,000,000: 15s. Last read position: chr21:46,120,525 INFO 2026-06-08 09:22:00 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:55s. Time for last 10,000,000: 16s. Last read position: chr22:41,339,180 INFO 2026-06-08 09:22:16 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:11s. Time for last 10,000,000: 15s. Last read position: chrX:53,552,882 INFO 2026-06-08 09:22:32 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:27s. Time for last 10,000,000: 15s. Last read position: chrX:154,366,430 INFO 2026-06-08 09:22:45 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:22:45 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:22:45 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:22:45 MarkDuplicates Before output close freeMemory: 203832384; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:22:45 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:22:45 MarkDuplicates After output close freeMemory: 104063088; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:22:45 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.55 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory