-ctat genome lib [/tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.xpOwO0wPfz/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary
-sample contains 104241047 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir -J /tmp/nxf.xpOwO0wPfz/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.xpOwO0wPfz/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[1100000], rate=56945.64/min -building interval tree based on /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[1110000], rate=48436.36/min -building interval tree based on /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[1100000], rate=44534.41/min -building interval tree based on /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[1100000], rate=41825.10/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir --filt_file /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
6000000.00 reads per min processed...
4500000.00 reads per min processed...
4800000.00 reads per min processed...
4285714.29 reads per min processed...
4000000.00 reads per min processed...
4200000.00 reads per min processed...
4000000.00 reads per min processed...
4153846.15 reads per min processed...
4000000.00 reads per min processed...
3882352.94 reads per min processed...
3789473.68 reads per min processed...
3900000.00 reads per min processed...
3818181.82 reads per min processed...
3750000.00 reads per min processed...
3840000.00 reads per min processed...
3777777.78 reads per min processed...
3857142.86 reads per min processed...
3800000.00 reads per min processed...
3870967.74 reads per min processed...
3818181.82 reads per min processed...
3882352.94 reads per min processed...
4058823.53 reads per min processed...
4000000.00 reads per min processed...
4054054.05 reads per min processed...
4000000.00 reads per min processed...
4050000.00 reads per min processed...
4000000.00 reads per min processed...
4046511.63 reads per min processed...
4000000.00 reads per min processed...
4043478.26 reads per min processed...
4000000.00 reads per min processed...
4040816.33 reads per min processed...
4000000.00 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.xpOwO0wPfz/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -138703.842304
EM: Round [1] log likelihood: -138639.284534
EM: Round [2] log likelihood: -138614.173349
EM: Round [3] log likelihood: -138601.903863
EM: Round [4] log likelihood: -138595.257303
EM: Round [5] log likelihood: -138591.430782
EM: Round [6] log likelihood: -138589.127330
EM: Round [7] log likelihood: -138587.682396
EM: Round [8] log likelihood: -138586.735935
EM: Round [9] log likelihood: -138586.087631
EM: Round [10] log likelihood: -138585.623869
EM: Round [11] log likelihood: -138585.278663
EM: Round [12] log likelihood: -138585.012552
EM: Round [13] log likelihood: -138584.801148
EM: Round [14] log likelihood: -138584.628865
EM: Round [15] log likelihood: -138584.485412
EM: Round [16] log likelihood: -138584.363782
EM: Round [17] log likelihood: -138584.259071
EM: Round [18] log likelihood: -138584.167760
EM: Round [19] log likelihood: -138584.087260
EM: Round [20] log likelihood: -138584.015634
EM: Round [21] log likelihood: -138583.951399
EM: Round [22] log likelihood: -138583.893405
EM: Round [23] log likelihood: -138583.840741
EM: Round [24] log likelihood: -138583.792679
EM: Round [25] log likelihood: -138583.748628
EM: Round [26] log likelihood: -138583.708101
EM: Round [27] log likelihood: -138583.670694
EM: Round [28] log likelihood: -138583.636067
EM: Round [29] log likelihood: -138583.603934
EM: Round [30] log likelihood: -138583.574048
EM: Round [31] log likelihood: -138583.546196
EM: Round [32] log likelihood: -138583.520195
EM: Round [33] log likelihood: -138583.495883
EM: Round [34] log likelihood: -138583.473120
EM: Round [35] log likelihood: -138583.451779
EM: Round [36] log likelihood: -138583.431750
EM: Round [37] log likelihood: -138583.412933
EM: Round [38] log likelihood: -138583.395239
EM: Round [39] log likelihood: -138583.378586
EM: Round [40] log likelihood: -138583.362903
EM: Round [41] log likelihood: -138583.348123
EM: Round [42] log likelihood: -138583.334186
EM: Round [43] log likelihood: -138583.321036
EM: Round [44] log likelihood: -138583.308623
EM: Round [45] log likelihood: -138583.296900
EM: Round [46] log likelihood: -138583.285825
EM: Round [47] log likelihood: -138583.275358
EM: Round [48] log likelihood: -138583.265463
EM: Round [49] log likelihood: -138583.256104
EM: Round [50] log likelihood: -138583.247251
EM: Round [51] log likelihood: -138583.238875
EM: Round [52] log likelihood: -138583.230947
EM: Round [53] log likelihood: -138583.223442
EM: Round [54] log likelihood: -138583.216336
EM: Round [55] log likelihood: -138583.209607
EM: Round [56] log likelihood: -138583.203234
EM: Round [57] log likelihood: -138583.197197
EM: Round [58] log likelihood: -138583.191477
EM: Round [59] log likelihood: -138583.186057
EM: Round [60] log likelihood: -138583.180921
EM: Round [61] log likelihood: -138583.176053
EM: Round [62] log likelihood: -138583.171439
EM: Round [63] log likelihood: -138583.167065
EM: Round [64] log likelihood: -138583.162919
EM: Round [65] log likelihood: -138583.158987
EM: Round [66] log likelihood: -138583.155260
EM: Round [67] log likelihood: -138583.151725
EM: Round [68] log likelihood: -138583.148373
EM: Round [69] log likelihood: -138583.145194
EM: Round [70] log likelihood: -138583.142179
EM: Round [71] log likelihood: -138583.139319
EM: Round [72] log likelihood: -138583.136607
EM: Round [73] log likelihood: -138583.134034
EM: Round [74] log likelihood: -138583.131593
EM: Round [75] log likelihood: -138583.129277
EM: Round [76] log likelihood: -138583.127081
EM: Round [77] log likelihood: -138583.124996
EM: Round [78] log likelihood: -138583.123019
EM: Round [79] log likelihood: -138583.121143
EM: Round [80] log likelihood: -138583.119363
EM: Round [81] log likelihood: -138583.117673
EM: Round [82] log likelihood: -138583.116071
EM: Round [83] log likelihood: -138583.114550
EM: Round [84] log likelihood: -138583.113106
EM: Round [85] log likelihood: -138583.111736
EM: Round [86] log likelihood: -138583.110436
EM: Round [87] log likelihood: -138583.109203
EM: Round [88] log likelihood: -138583.108032
EM: Round [89] log likelihood: -138583.106921
EM: Round [90] log likelihood: -138583.105866
EM: Round [91] log likelihood: -138583.104865
EM: Round [92] log likelihood: -138583.103915
EM: Round [93] log likelihood: -138583.103013
EM: Round [94] log likelihood: -138583.102157
EM: Round [95] log likelihood: -138583.101345
EM: Round [96] log likelihood: -138583.100573
EM: Round [97] log likelihood: -138583.099841
EM: Round [98] log likelihood: -138583.099146
EM: Round [99] log likelihood: -138583.098487
EM: Round [100] log likelihood: -138583.097861
EM: Round [101] log likelihood: -138583.097266
EM: Round [102] log likelihood: -138583.096702
EM: Round [103] log likelihood: -138583.096166
EM: Round [104] log likelihood: -138583.095657
EM: Round [105] log likelihood: -138583.095175
EM: Round [106] log likelihood: -138583.094716
EM: Round [107] log likelihood: -138583.094281
EM: Round [108] log likelihood: -138583.093868
EM: Round [109] log likelihood: -138583.093476
EM: Round [110] log likelihood: -138583.093103
EM: Round [111] log likelihood: -138583.092749
EM: Round [112] log likelihood: -138583.092414
EM: Round [113] log likelihood: -138583.092095
EM: Round [114] log likelihood: -138583.091792
EM: Round [115] log likelihood: -138583.091505
EM: Round [116] log likelihood: -138583.091232
EM: Round [117] log likelihood: -138583.090973
EM: Round [118] log likelihood: -138583.090727
EM: Round [119] log likelihood: -138583.090493
EM: Round [120] log likelihood: -138583.090271
EM: Round [121] log likelihood: -138583.090061
EM: Round [122] log likelihood: -138583.089861
EM: Round [123] log likelihood: -138583.089671
EM: Round [124] log likelihood: -138583.089490
EM: Round [125] log likelihood: -138583.089319
EM: Round [126] log likelihood: -138583.089157
EM: Round [127] log likelihood: -138583.089002
EM: Round [128] log likelihood: -138583.088855
EM: Round [129] log likelihood: -138583.088716
EM: Round [130] log likelihood: -138583.088584
EM: Round [131] log likelihood: -138583.088458
EM: Round [132] log likelihood: -138583.088339
EM: Round [133] log likelihood: -138583.088225
EM: Round [134] log likelihood: -138583.088118
EM: Round [135] log likelihood: -138583.088015
EM: Round [136] log likelihood: -138583.087918
EM: Stopping iterations at round 136 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -138603.999009
EM: Round [1] log likelihood: -138544.794918
EM: Round [2] log likelihood: -138523.201272
EM: Round [3] log likelihood: -138513.075442
EM: Round [4] log likelihood: -138507.708949
EM: Round [5] log likelihood: -138504.648479
EM: Round [6] log likelihood: -138502.812812
EM: Round [7] log likelihood: -138501.663131
EM: Round [8] log likelihood: -138500.910976
EM: Round [9] log likelihood: -138500.396633
EM: Round [10] log likelihood: -138500.029700
EM: Round [11] log likelihood: -138499.757720
EM: Round [12] log likelihood: -138499.549315
EM: Round [13] log likelihood: -138499.385067
EM: Round [14] log likelihood: -138499.252533
EM: Round [15] log likelihood: -138499.143464
EM: Round [16] log likelihood: -138499.052214
EM: Round [17] log likelihood: -138498.974803
EM: Round [18] log likelihood: -138498.908355
EM: Round [19] log likelihood: -138498.850739
EM: Round [20] log likelihood: -138498.800345
EM: Round [21] log likelihood: -138498.755934
EM: Round [22] log likelihood: -138498.716537
EM: Round [23] log likelihood: -138498.681385
EM: Round [24] log likelihood: -138498.649857
EM: Round [25] log likelihood: -138498.621451
EM: Round [26] log likelihood: -138498.595752
EM: Round [27] log likelihood: -138498.572415
EM: Round [28] log likelihood: -138498.551153
EM: Round [29] log likelihood: -138498.531720
EM: Round [30] log likelihood: -138498.513911
EM: Round [31] log likelihood: -138498.497547
EM: Round [32] log likelihood: -138498.482478
EM: Round [33] log likelihood: -138498.468569
EM: Round [34] log likelihood: -138498.455708
EM: Round [35] log likelihood: -138498.443792
EM: Round [36] log likelihood: -138498.432735
EM: Round [37] log likelihood: -138498.422458
EM: Round [38] log likelihood: -138498.412894
EM: Round [39] log likelihood: -138498.403980
EM: Round [40] log likelihood: -138498.395662
EM: Round [41] log likelihood: -138498.387892
EM: Round [42] log likelihood: -138498.380627
EM: Round [43] log likelihood: -138498.373826
EM: Round [44] log likelihood: -138498.367455
EM: Round [45] log likelihood: -138498.361482
EM: Round [46] log likelihood: -138498.355877
EM: Round [47] log likelihood: -138498.350615
EM: Round [48] log likelihood: -138498.345670
EM: Round [49] log likelihood: -138498.341022
EM: Round [50] log likelihood: -138498.336649
EM: Round [51] log likelihood: -138498.332533
EM: Round [52] log likelihood: -138498.328658
EM: Round [53] log likelihood: -138498.325008
EM: Round [54] log likelihood: -138498.321567
EM: Round [55] log likelihood: -138498.318324
EM: Round [56] log likelihood: -138498.315265
EM: Round [57] log likelihood: -138498.312379
EM: Round [58] log likelihood: -138498.309655
EM: Round [59] log likelihood: -138498.307084
EM: Round [60] log likelihood: -138498.304657
EM: Round [61] log likelihood: -138498.302363
EM: Round [62] log likelihood: -138498.300197
EM: Round [63] log likelihood: -138498.298150
EM: Round [64] log likelihood: -138498.296215
EM: Round [65] log likelihood: -138498.294386
EM: Round [66] log likelihood: -138498.292656
EM: Round [67] log likelihood: -138498.291021
EM: Round [68] log likelihood: -138498.289474
EM: Round [69] log likelihood: -138498.288010
EM: Round [70] log likelihood: -138498.286626
EM: Round [71] log likelihood: -138498.285316
EM: Round [72] log likelihood: -138498.284076
EM: Round [73] log likelihood: -138498.282902
EM: Round [74] log likelihood: -138498.281791
EM: Round [75] log likelihood: -138498.280739
EM: Round [76] log likelihood: -138498.279744
EM: Round [77] log likelihood: -138498.278801
EM: Round [78] log likelihood: -138498.277908
EM: Round [79] log likelihood: -138498.277062
EM: Round [80] log likelihood: -138498.276261
EM: Round [81] log likelihood: -138498.275502
EM: Round [82] log likelihood: -138498.274783
EM: Round [83] log likelihood: -138498.274102
EM: Round [84] log likelihood: -138498.273457
EM: Round [85] log likelihood: -138498.272845
EM: Round [86] log likelihood: -138498.272266
EM: Round [87] log likelihood: -138498.271717
EM: Round [88] log likelihood: -138498.271196
EM: Round [89] log likelihood: -138498.270703
EM: Round [90] log likelihood: -138498.270236
EM: Round [91] log likelihood: -138498.269792
EM: Round [92] log likelihood: -138498.269372
EM: Round [93] log likelihood: -138498.268974
EM: Round [94] log likelihood: -138498.268597
EM: Round [95] log likelihood: -138498.268239
EM: Round [96] log likelihood: -138498.267899
EM: Round [97] log likelihood: -138498.267578
EM: Round [98] log likelihood: -138498.267272
EM: Round [99] log likelihood: -138498.266983
EM: Round [100] log likelihood: -138498.266709
EM: Round [101] log likelihood: -138498.266449
EM: Round [102] log likelihood: -138498.266202
EM: Round [103] log likelihood: -138498.265968
EM: Round [104] log likelihood: -138498.265746
EM: Round [105] log likelihood: -138498.265535
EM: Round [106] log likelihood: -138498.265336
EM: Round [107] log likelihood: -138498.265146
EM: Round [108] log likelihood: -138498.264967
EM: Round [109] log likelihood: -138498.264796
EM: Round [110] log likelihood: -138498.264635
EM: Round [111] log likelihood: -138498.264481
EM: Round [112] log likelihood: -138498.264336
EM: Round [113] log likelihood: -138498.264198
EM: Round [114] log likelihood: -138498.264067
EM: Round [115] log likelihood: -138498.263942
EM: Round [116] log likelihood: -138498.263824
EM: Round [117] log likelihood: -138498.263713
EM: Round [118] log likelihood: -138498.263606
EM: Round [119] log likelihood: -138498.263506
EM: Round [120] log likelihood: -138498.263410
EM: Stopping iterations at round 120 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 104241047 > /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir > /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir --annotate /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir
-done, see /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1376, filtered: 8468)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.xpOwO0wPfz/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.xpOwO0wPfz/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [IGL.g@-ext]
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WARNING, no entry stored in dbm for [IGL-.g@-ext]
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WARNING, no entry stored in dbm for [ENSG00000234911.2]
WARNING, no entry stored in dbm for [ENSG00000254083.6]
WARNING, no entry stored in dbm for [ENSG00000278975.1]
WARNING, no entry stored in dbm for [ENSG00000286133.2]
WARNING, no entry stored in dbm for [ENSG00000224966.4]
WARNING, no entry stored in dbm for [ENSG00000267046.1]
WARNING, no entry stored in dbm for [ENSG00000270576.1]
WARNING, no entry stored in dbm for [ENSG00000260796.1]
WARNING, no entry stored in dbm for [ENSG00000258350.1]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000230406.2]
WARNING, no entry stored in dbm for [ENSG00000253800.1]
WARNING, no entry stored in dbm for [ENSG00000257539.2]
WARNING, no entry stored in dbm for [ENSG00000233175.2]
WARNING, no entry stored in dbm for [ENSG00000248994.2]
WARNING, no entry stored in dbm for [ENSG00000263821.1]
WARNING, no entry stored in dbm for [ENSG00000218313.1]
WARNING, no entry stored in dbm for [ENSG00000242207.1]
WARNING, no entry stored in dbm for [ENSG00000245910.8]
WARNING, no entry stored in dbm for [ENSG00000205583.13]
WARNING, no entry stored in dbm for [ENSG00000185710.9]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000248727.6]
WARNING, no entry stored in dbm for [ENSG00000260727.2]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000286953.1]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000200218.1]
WARNING, no entry stored in dbm for [ENSG00000252294.1]
WARNING, no entry stored in dbm for [ENSG00000234899.11]
WARNING, no entry stored in dbm for [ENSG00000182397.14]
WARNING, no entry stored in dbm for [ENSG00000251532.1]
WARNING, no entry stored in dbm for [ENSG00000225475.1]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000230897.1]
WARNING, no entry stored in dbm for [ENSG00000242757.1]
WARNING, no entry stored in dbm for [ENSG00000273344.1]
WARNING, no entry stored in dbm for [ENSG00000238069.1]
WARNING, no entry stored in dbm for [ENSG00000244705.1]
WARNING, no entry stored in dbm for [ENSG00000241741.1]
WARNING, no entry stored in dbm for [ENSG00000226448.1]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000237943.7]
WARNING, no entry stored in dbm for [ENSG00000243141.2]
WARNING, no entry stored in dbm for [ENSG00000230370.1]
WARNING, no entry stored in dbm for [ENSG00000225661.7]
WARNING, no entry stored in dbm for [ENSG00000139239.7]
WARNING, no entry stored in dbm for [ENSG00000274210.1]
WARNING, no entry stored in dbm for [ENSG00000251754.1]
WARNING, no entry stored in dbm for [ENSG00000241889.1]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000242170.3]
WARNING, no entry stored in dbm for [ENSG00000230937.12]
WARNING, no entry stored in dbm for [ENSG00000278147.1]
WARNING, no entry stored in dbm for [ENSG00000228903.7]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000259719.6]
WARNING, no entry stored in dbm for [ENSG00000258012.1]
WARNING, no entry stored in dbm for [ENSG00000253355.1]
WARNING, no entry stored in dbm for [ENSG00000287498.1]
WARNING, no entry stored in dbm for [ENSG00000174407.13]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000231689.2]
WARNING, no entry stored in dbm for [ENSG00000196364.9]
WARNING, no entry stored in dbm for [ENSG00000230082.1]
WARNING, no entry stored in dbm for [ENSG00000224424.8]
WARNING, no entry stored in dbm for [ENSG00000203739.4]
WARNING, no entry stored in dbm for [ENSG00000214975.4]
WARNING, no entry stored in dbm for [ENSG00000205578.6]
WARNING, no entry stored in dbm for [ENSG00000285886.1]
WARNING, no entry stored in dbm for [ENSG00000236052.2]
WARNING, no entry stored in dbm for [ENSG00000228212.1]
WARNING, no entry stored in dbm for [ENSG00000261094.2]
WARNING, no entry stored in dbm for [ENSG00000283349.3]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000236990.1]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000253341.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000223891.6]
WARNING, no entry stored in dbm for [ENSG00000242593.7]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [ENSG00000226949.1]
WARNING, no entry stored in dbm for [ENSG00000247556.6]
WARNING, no entry stored in dbm for [ENSG00000181355.21]
WARNING, no entry stored in dbm for [ENSG00000224367.6]
WARNING, no entry stored in dbm for [ENSG00000258343.2]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000266916.7]
WARNING, no entry stored in dbm for [ENSG00000249509.1]
WARNING, no entry stored in dbm for [ENSG00000233369.7]
WARNING, no entry stored in dbm for [ENSG00000272970.3]
WARNING, no entry stored in dbm for [ENSG00000245532.9]
WARNING, no entry stored in dbm for [ENSG00000236494.2]
WARNING, no entry stored in dbm for [ENSG00000269483.2]
WARNING, no entry stored in dbm for [ENSG00000258792.4]
WARNING, no entry stored in dbm for [ENSG00000251034.2]
WARNING, no entry stored in dbm for [ENSG00000259370.2]
WARNING, no entry stored in dbm for [ENSG00000236051.7]
WARNING, no entry stored in dbm for [ENSG00000288549.1]
WARNING, no entry stored in dbm for [ENSG00000270307.1]
WARNING, no entry stored in dbm for [ENSG00000186715.11]
WARNING, no entry stored in dbm for [ENSG00000227769.7]
WARNING, no entry stored in dbm for [ENSG00000253522.6]
WARNING, no entry stored in dbm for [ENSG00000229641.1]
WARNING, no entry stored in dbm for [ENSG00000230683.1]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000231312.7]
WARNING, no entry stored in dbm for [ENSG00000203729.8]
WARNING, no entry stored in dbm for [ENSG00000228536.3]
WARNING, no entry stored in dbm for [ENSG00000266504.1]
WARNING, no entry stored in dbm for [ENSG00000248640.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000238042.5]
WARNING, no entry stored in dbm for [ENSG00000245662.4]
WARNING, no entry stored in dbm for [ENSG00000224153.3]
WARNING, no entry stored in dbm for [ENSG00000241696.2]
WARNING, no entry stored in dbm for [ENSG00000232679.2]
WARNING, no entry stored in dbm for [ENSG00000225975.7]
WARNING, no entry stored in dbm for [ENSG00000225975.7]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000228262.10]
WARNING, no entry stored in dbm for [ENSG00000228262.10]
WARNING, no entry stored in dbm for [ENSG00000235437.8]
WARNING, no entry stored in dbm for [ENSG00000284543.1]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000259070.7]
WARNING, no entry stored in dbm for [ENSG00000253394.6]
WARNING, no entry stored in dbm for [ENSG00000226903.2]
WARNING, no entry stored in dbm for [ENSG00000224243.2]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000165121.11]
WARNING, no entry stored in dbm for [ENSG00000253354.2]
WARNING, no entry stored in dbm for [ENSG00000245008.4]
WARNING, no entry stored in dbm for [ENSG00000232242.2]
WARNING, no entry stored in dbm for [ENSG00000237135.1]
WARNING, no entry stored in dbm for [ENSG00000204581.3]
WARNING, no entry stored in dbm for [ENSG00000246174.9]
WARNING, no entry stored in dbm for [ENSG00000240777.2]
WARNING, no entry stored in dbm for [ENSG00000287678.1]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000268621.6]
WARNING, no entry stored in dbm for [ENSG00000248880.1]
WARNING, no entry stored in dbm for [ENSG00000227733.10]
WARNING, no entry stored in dbm for [ENSG00000270532.1]
WARNING, no entry stored in dbm for [ENSG00000241203.1]
WARNING, no entry stored in dbm for [ENSG00000253774.1]
WARNING, no entry stored in dbm for [ENSG00000288062.1]
WARNING, no entry stored in dbm for [ENSG00000281005.1]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000247033.1]
WARNING, no entry stored in dbm for [ENSG00000255874.2]
WARNING, no entry stored in dbm for [ENSG00000259247.1]
WARNING, no entry stored in dbm for [ENSG00000271333.1]
WARNING, no entry stored in dbm for [ENSG00000196204.12]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000229236.3]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000258420.1]
WARNING, no entry stored in dbm for [ENSG00000259259.1]
WARNING, no entry stored in dbm for [ENSG00000251620.3]
WARNING, no entry stored in dbm for [ENSG00000277737.3]
WARNING, no entry stored in dbm for [ENSG00000237238.3]
WARNING, no entry stored in dbm for [ENSG00000196166.5]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000244097.1]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000286540.1]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000288531.1]
WARNING, no entry stored in dbm for [ENSG00000273118.1]
WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000257790.1]
WARNING, no entry stored in dbm for [ENSG00000267083.1]
WARNING, no entry stored in dbm for [ENSG00000287750.1]
WARNING, no entry stored in dbm for [ENSG00000248994.2]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000263883.1]
WARNING, no entry stored in dbm for [ENSG00000207441.1]
WARNING, no entry stored in dbm for [ENSG00000268388.6]
WARNING, no entry stored in dbm for [ENSG00000231437.3]
WARNING, no entry stored in dbm for [ENSG00000254275.6]
WARNING, no entry stored in dbm for [ENSG00000231890.8]
WARNING, no entry stored in dbm for [ENSG00000235244.4]
WARNING, no entry stored in dbm for [ENSG00000258583.7]
WARNING, no entry stored in dbm for [ENSG00000251432.7]
WARNING, no entry stored in dbm for [ENSG00000214076.3]
WARNING, no entry stored in dbm for [ENSG00000264112.1]
WARNING, no entry stored in dbm for [ENSG00000280306.1]
WARNING, no entry stored in dbm for [ENSG00000131797.12]
WARNING, no entry stored in dbm for [ENSG00000164616.16]
WARNING, no entry stored in dbm for [ENSG00000259755.1]
WARNING, no entry stored in dbm for [ENSG00000230091.6]
WARNING, no entry stored in dbm for [ENSG00000231507.2]
WARNING, no entry stored in dbm for [ENSG00000206702.1]
WARNING, no entry stored in dbm for [ENSG00000284448.1]
WARNING, no entry stored in dbm for [ENSG00000245910.8]
WARNING, no entry stored in dbm for [ENSG00000232175.1]
WARNING, no entry stored in dbm for [ENSG00000232284.7]
WARNING, no entry stored in dbm for [ENSG00000167747.15]
WARNING, no entry stored in dbm for [ENSG00000284711.1]
WARNING, no entry stored in dbm for [ENSG00000285417.1]
WARNING, no entry stored in dbm for [ENSG00000285417.1]
WARNING, no entry stored in dbm for [ENSG00000285417.1]
WARNING, no entry stored in dbm for [ENSG00000237945.7]
WARNING, no entry stored in dbm for [ENSG00000225885.7]
WARNING, no entry stored in dbm for [ENSG00000231329.8]
WARNING, no entry stored in dbm for [ENSG00000163098.6]
WARNING, no entry stored in dbm for [ENSG00000254560.6]
WARNING, no entry stored in dbm for [ENSG00000177410.13]
WARNING, no entry stored in dbm for [ENSG00000286983.1]
WARNING, no entry stored in dbm for [ENSG00000275110.1]
WARNING, no entry stored in dbm for [ENSG00000226149.6]
WARNING, no entry stored in dbm for [ENSG00000205853.12]
WARNING, no entry stored in dbm for [ENSG00000201271.1]
WARNING, no entry stored in dbm for [ENSG00000247137.9]
WARNING, no entry stored in dbm for [ENSG00000273199.1]
WARNING, no entry stored in dbm for [ENSG00000224431.1]
WARNING, no entry stored in dbm for [ENSG00000255440.2]
WARNING, no entry stored in dbm for [ENSG00000228980.4]
WARNING, no entry stored in dbm for [ENSG00000251143.1]
WARNING, no entry stored in dbm for [ENSG00000235673.1]
WARNING, no entry stored in dbm for [ENSG00000283380.1]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000285799.1]
WARNING, no entry stored in dbm for [ENSG00000254741.1]
WARNING, no entry stored in dbm for [ENSG00000239906.1]
WARNING, no entry stored in dbm for [ENSG00000270780.1]
WARNING, no entry stored in dbm for [ENSG00000276997.4]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000235749.3]
WARNING, no entry stored in dbm for [ENSG00000228685.1]
WARNING, no entry stored in dbm for [ENSG00000234851.4]
WARNING, no entry stored in dbm for [ENSG00000231606.2]
WARNING, no entry stored in dbm for [ENSG00000246203.2]
WARNING, no entry stored in dbm for [ENSG00000226355.2]
WARNING, no entry stored in dbm for [ENSG00000285424.1]
WARNING, no entry stored in dbm for [ENSG00000285424.1]
WARNING, no entry stored in dbm for [ENSG00000285907.1]
WARNING, no entry stored in dbm for [ENSG00000258458.8]
WARNING, no entry stored in dbm for [ENSG00000261060.1]
WARNING, no entry stored in dbm for [ENSG00000203498.3]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000233183.3]
WARNING, no entry stored in dbm for [ENSG00000244471.6]
WARNING, no entry stored in dbm for [ENSG00000258875.6]
WARNING, no entry stored in dbm for [ENSG00000258572.1]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000276649.1]
WARNING, no entry stored in dbm for [ENSG00000286546.1]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000236740.6]
WARNING, no entry stored in dbm for [ENSG00000260425.1]
WARNING, no entry stored in dbm for [ENSG00000226239.2]
WARNING, no entry stored in dbm for [ENSG00000286652.1]
WARNING, no entry stored in dbm for [ENSG00000232599.1]
WARNING, no entry stored in dbm for [ENSG00000246067.8]
WARNING, no entry stored in dbm for [ENSG00000229162.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000271811.1]
WARNING, no entry stored in dbm for [ENSG00000218052.5]
WARNING, no entry stored in dbm for [ENSG00000239572.3]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000266920.1]
WARNING, no entry stored in dbm for [ENSG00000254319.6]
WARNING, no entry stored in dbm for [ENSG00000276216.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000264970.2]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000287981.1]
WARNING, no entry stored in dbm for [ENSG00000265533.1]
WARNING, no entry stored in dbm for [ENSG00000241011.1]
WARNING, no entry stored in dbm for [ENSG00000283209.1]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000259370.2]
WARNING, no entry stored in dbm for [ENSG00000282375.1]
WARNING, no entry stored in dbm for [ENSG00000273328.5]
WARNING, no entry stored in dbm for [ENSG00000241853.1]
WARNING, no entry stored in dbm for [ENSG00000287290.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000243635.1]
WARNING, no entry stored in dbm for [ENSG00000239969.5]
WARNING, no entry stored in dbm for [ENSG00000267198.1]
WARNING, no entry stored in dbm for [ENSG00000131484.4]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000230459.3]
WARNING, no entry stored in dbm for [ENSG00000213721.3]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000253312.1]
WARNING, no entry stored in dbm for [ENSG00000287625.1]
WARNING, no entry stored in dbm for [ENSG00000240418.1]
WARNING, no entry stored in dbm for [ENSG00000287306.1]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000203327.2]
WARNING, no entry stored in dbm for [ENSG00000272667.1]
WARNING, no entry stored in dbm for [ENSG00000258017.2]
WARNING, no entry stored in dbm for [ENSG00000257489.6]
WARNING, no entry stored in dbm for [ENSG00000276259.1]
WARNING, no entry stored in dbm for [ENSG00000269356.1]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000214331.8]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000250692.1]
WARNING, no entry stored in dbm for [ENSG00000258320.1]
WARNING, no entry stored in dbm for [ENSG00000235725.1]
WARNING, no entry stored in dbm for [ENSG00000268650.3]
WARNING, no entry stored in dbm for [ENSG00000272918.1]
WARNING, no entry stored in dbm for [ENSG00000233068.3]
WARNING, no entry stored in dbm for [ENSG00000273623.1]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000241278.1]
WARNING, no entry stored in dbm for [ENSG00000228204.2]
WARNING, no entry stored in dbm for [ENSG00000283366.2]
WARNING, no entry stored in dbm for [ENSG00000197421.10]
WARNING, no entry stored in dbm for [ENSG00000285608.1]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000242908.6]
* STAR-Fusion complete. See output: /tmp/nxf.xpOwO0wPfz/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)