.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260501_LH00995_0036_B23WHYVLT4;L002)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/c46d3e4c293cc07ada7ef352547d9d/.command.sh
Size: 359 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260501_LH00995_0036_B23WHYVLT4;L002)
Attempt

Content

#!/bin/bash -euo pipefail
bcl-convert \
     \
    --tiles s_2 \
    --output-directory output \
    --bcl-input-directory rundir \
    --sample-sheet rundir/SampleSheet.csv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT":
    bclconvert: $(bcl-convert -V 2>&1 | head -n 1 | sed 's/^.*Version //')
END_VERSIONS