Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/786790749973d93e500d0ffca73dae/aih-tih-sc-8d3f7c-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/c1607b5b74de80c9bbb7f6c66007eb/aih-tih-sc-8d3f7c-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/18c63011808582fe795b19be46a0bb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/18c63011808582fe795b19be46a0bb/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory