Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/c5841d99fc1a6565698b0a86c4fa01/aih-tih-sc-60f9b9-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/ec79009ef446c5c89f85bb98654248/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/ec79009ef446c5c89f85bb98654248/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
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Processed 102000000 records
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Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
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Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
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Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
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Processed 143000000 records
Processed 144000000 records
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Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
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Processed 165000000 records
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Processed 182000000 records
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Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
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Processed 199000000 records
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Processed 225000000 records
Processed 226000000 records
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Processed 228000000 records
Processed 229000000 records
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Processed 233000000 records
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Processed 238000000 records
Processed 239000000 records
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Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
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Processed 245000000 records
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Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
paired = 125967834
unpaired = 2323219
MERGED PAIRED END READS = 125967834
MATES PROCESSED = 254258887
TOTAL READS = 128291053
DISTINCT READS = 5.57014e+07
DISTINCT COUNTS = 640
MAX COUNT = 562456
COUNTS OF 1 = 2.7851e+07
MAX TERMS = 100
OBSERVED COUNTS (562457)
1 27850966
2 13105077
3 6488170
4 3324788
5 1783760
6 1011373
7 606645
8 385136
9 257545
10 178265
11 128706
12 96274
13 72622
14 57025
15 45278
16 36805
17 30737
18 25504
19 21571
20 18202
21 15808
22 13946
23 11954
24 10674
25 9418
26 8395
27 7372
28 6692
29 5975
30 5459
31 4973
32 4508
33 4236
34 3815
35 3633
36 3283
37 2994
38 2810
39 2552
40 2316
41 2201
42 1983
43 1890
44 1752
45 1676
46 1514
47 1423
48 1478
49 1301
50 1224
51 1168
52 1060
53 1041
54 922
55 972
56 897
57 786
58 794
59 765
60 671
61 703
62 673
63 607
64 622
65 585
66 526
67 545
68 547
69 490
70 451
71 417
72 365
73 386
74 360
75 367
76 345
77 325
78 346
79 318
80 309
81 265
82 276
83 289
84 280
85 251
86 248
87 238
88 211
89 244
90 207
91 210
92 216
93 198
94 191
95 174
96 167
97 155
98 136
99 171
100 147
101 152
102 129
103 158
104 111
105 132
106 139
107 132
108 133
109 108
110 124
111 107
112 118
113 113
114 105
115 83
116 93
117 89
118 83
119 89
120 100
121 96
122 82
123 66
124 88
125 83
126 75
127 72
128 70
129 53
130 67
131 62
132 70
133 72
134 76
135 55
136 41
137 66
138 59
139 51
140 51
141 62
142 53
143 45
144 47
145 45
146 51
147 61
148 46
149 52
150 45
151 31
152 47
153 40
154 43
155 49
156 48
157 28
158 32
159 25
160 43
161 30
162 36
163 30
164 31
165 31
166 35
167 39
168 29
169 35
170 37
171 30
172 37
173 17
174 35
175 25
176 32
177 21
178 24
179 32
180 19
181 17
182 22
183 24
184 23
185 18
186 21
187 15
188 23
189 22
190 21
191 19
192 21
193 18
194 20
195 21
196 19
197 18
198 18
199 11
200 14
201 17
202 23
203 25
204 24
205 14
206 15
207 16
208 18
209 8
210 19
211 13
212 8
213 24
214 22
215 14
216 12
217 17
218 13
219 14
220 14
221 13
222 11
223 9
224 10
225 7
226 10
227 12
228 7
229 7
230 12
231 12
232 14
233 11
234 14
235 9
236 16
237 3
238 10
239 8
240 12
241 7
242 11
243 12
244 8
245 3
246 18
247 2
248 11
249 9
250 14
251 13
252 6
253 4
254 8
255 5
256 8
257 13
258 10
259 7
260 8
261 11
262 6
263 8
264 10
265 7
266 7
267 9
268 7
269 7
270 7
271 8
272 7
273 8
274 5
275 14
276 4
277 6
278 4
279 7
280 8
281 6
282 5
283 6
284 10
285 3
286 4
287 6
288 8
289 3
290 3
291 6
292 8
293 3
294 3
295 5
296 6
297 4
298 3
299 3
300 1
301 7
302 3
303 5
304 6
305 2
306 3
307 6
308 2
309 4
310 11
311 9
312 3
313 2
314 2
315 3
316 4
317 3
318 4
319 5
320 5
321 2
322 7
323 4
324 3
325 5
326 3
327 1
328 3
330 4
331 4
332 6
333 2
334 5
335 5
336 4
337 4
338 1
339 5
340 3
341 3
342 4
343 2
344 3
345 4
346 2
347 6
348 3
349 3
350 4
352 3
353 2
354 6
355 1
357 2
358 7
359 2
361 3
362 1
364 3
365 2
366 1
368 1
369 2
370 2
371 3
372 3
373 2
374 2
375 2
376 4
377 1
378 2
379 2
381 1
382 2
383 2
384 3
385 1
386 3
387 3
388 2
390 2
391 2
392 1
397 1
398 3
399 1
400 2
403 4
404 1
406 1
407 3
408 2
409 1
410 2
412 2
414 1
415 2
417 1
418 1
420 1
421 3
423 1
424 2
425 1
426 1
427 5
429 1
430 1
431 2
432 1
433 3
434 2
435 2
438 1
440 3
441 1
442 6
444 2
445 2
446 1
449 1
450 2
451 2
452 2
453 2
454 1
455 1
459 2
460 2
461 1
464 1
465 1
467 1
468 1
469 2
471 1
472 1
475 1
478 1
479 2
480 1
481 1
484 1
485 2
486 1
487 1
489 1
490 3
491 2
492 1
494 1
495 3
496 1
497 1
500 1
502 1
503 1
504 1
505 1
506 2
507 1
509 1
510 3
511 1
512 1
513 2
514 1
519 1
520 1
521 2
524 1
528 1
529 1
533 1
534 2
535 2
536 1
537 1
539 1
540 1
541 1
544 2
546 1
551 1
553 1
554 2
562 1
564 1
565 1
567 1
572 1
574 1
575 1
579 1
581 1
582 1
583 2
585 2
586 1
588 1
589 1
595 1
601 2
602 1
603 1
604 2
605 1
606 1
607 1
609 1
611 1
618 3
622 1
623 1
624 1
628 1
629 1
631 1
633 1
640 1
647 1
648 1
649 1
652 2
653 1
655 1
658 1
665 1
666 2
668 1
673 1
674 1
676 1
678 1
694 1
699 1
700 1
703 1
706 1
707 3
708 3
709 1
711 1
715 1
718 1
723 1
724 1
726 1
727 2
732 1
733 1
736 1
737 1
739 2
740 1
747 2
748 1
756 1
757 1
758 1
765 1
766 1
768 1
769 1
771 1
773 1
781 1
783 1
785 2
786 1
799 2
802 1
810 1
819 1
827 1
828 1
834 1
835 1
839 1
841 1
843 1
852 2
855 1
857 1
858 1
863 2
881 1
882 1
884 1
886 1
888 1
892 1
896 1
899 1
901 1
902 1
903 2
906 2
925 1
933 1
940 1
943 1
948 2
957 1
959 1
963 1
971 1
983 1
987 1
1001 1
1029 1
1030 1
1065 1
1106 1
1119 1
1139 1
1169 1
1193 1
1246 1
1278 1
1325 1
1393 1
1447 1
1454 1
1501 1
1556 1
1628 1
1757 1
1823 1
1834 1
1840 1
2291 1
3058 1
3144 1
3293 1
5201 1
7217 1
25392 1
562456 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
......._..............__...._._............._...._.._...__......._....__
......._............._.._........._..........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]