Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/96e5d55d4001857ba03b04d0b59f05/FFPE_HD789_01_RNA_13_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/e160fa44f06db7da541841b3f507fb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/e160fa44f06db7da541841b3f507fb/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory