File Info

Filename
aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/0e14d564c92aee90169d8f43a34879/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:38:10
                             Started mapping on |	Jun 08 07:40:46
                                    Finished on |	Jun 08 08:35:11
       Mapping speed, Million of reads per hour |	325.52

                          Number of input reads |	295225951
                      Average input read length |	251
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279526121
                        Uniquely mapped reads % |	94.68%
                          Average mapped length |	251.44
                       Number of splices: Total |	339911633
            Number of splices: Annotated (sjdb) |	335751259
                       Number of splices: GT/AG |	336849259
                       Number of splices: GC/AG |	2146830
                       Number of splices: AT/AC |	286870
               Number of splices: Non-canonical |	628674
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.53
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10257871
             % of reads mapped to multiple loci |	3.47%
        Number of reads mapped to too many loci |	231726
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	567058
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	2835299
                 % of reads unmapped: too short |	0.96%
                Number of reads unmapped: other |	219533
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3701732
                            % of chimeric reads |	1.25%