Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/c59cf5e82db2eb93d6775dee3e1856/aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/f277cf9232d7073009b753ffe0898c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/b0361db838e2a9a600982481a9223b/aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/f277cf9232d7073009b753ffe0898c/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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