Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/fe42d3abf427a47c84b6dc4182fb52/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1fffb548fa4e10c9ec207fcbade05d/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/fe42d3abf427a47c84b6dc4182fb52/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/774463dd25704cd3f82a356f79188a/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1