File Info

Filename
aih-tih-sc-0183f6-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/3b6323ed88109c4f4ab47fcd327391/aih-tih-sc-0183f6-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:32:13
                             Started mapping on |	Jun 08 07:34:19
                                    Finished on |	Jun 08 08:10:34
       Mapping speed, Million of reads per hour |	355.96

                          Number of input reads |	215057691
                      Average input read length |	222
                                    UNIQUE READS:
                   Uniquely mapped reads number |	199768661
                        Uniquely mapped reads % |	92.89%
                          Average mapped length |	221.99
                       Number of splices: Total |	180004147
            Number of splices: Annotated (sjdb) |	177528468
                       Number of splices: GT/AG |	178044441
                       Number of splices: GC/AG |	1350789
                       Number of splices: AT/AC |	190549
               Number of splices: Non-canonical |	418368
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10768452
             % of reads mapped to multiple loci |	5.01%
        Number of reads mapped to too many loci |	414056
             % of reads mapped to too many loci |	0.19%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	370240
       % of reads unmapped: too many mismatches |	0.17%
            Number of reads unmapped: too short |	2017005
                 % of reads unmapped: too short |	0.94%
                Number of reads unmapped: other |	301520
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2832133
                            % of chimeric reads |	1.32%