File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/49d0c491ce74ce3af6c4f095923190/.command.log
Size
1.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-c55577-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/50129dd676b907b2f66cc693f62900/aih-tih-sc-c55577-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/49d0c491ce74ce3af6c4f095923190/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/49d0c491ce74ce3af6c4f095923190/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/620e92a8548dcf9d4def4359829cb5/aih-tih-sc-c55577-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/3 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/3 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 1/3 [00:00<00:00,  9.25it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 1/3 [00:00<00:00,  9.25it/s]     
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  9.48it/s]
Processing CRYZL2P--SEC16B:  67%|██████▋   | 2/3 [00:00<00:00,  9.48it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 3/3 [00:00<00:00,  9.56it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 3/3 [00:00<00:00,  9.51it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory