Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/30e5678b5e3b87f7c9a913ab1a82ab/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/30e5678b5e3b87f7c9a913ab1a82ab/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/9b4784e989937274c95e3ce5e97ec3/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/15030876305a5ac727d6f7919f5c46/aih-tih-sc-762402-R1_B23WHYVLT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/15030876305a5ac727d6f7919f5c46/aih-tih-sc-762402-R1_B23WHYVLT4_1_2.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.RCj0AEj3sg/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary -sample contains 211921192 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir -J /tmp/nxf.RCj0AEj3sg/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.RCj0AEj3sg/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=100000.00/min [20000], rate=109090.91/min [30000], rate=112500.00/min [40000], rate=104347.83/min [50000], rate=100000.00/min [60000], rate=105882.35/min [70000], rate=105000.00/min [80000], rate=90566.04/min [90000], rate=79411.76/min [100000], rate=72289.16/min [110000], rate=67346.94/min [120000], rate=63157.89/min [130000], rate=61904.76/min [140000], rate=60869.57/min [150000], rate=58823.53/min [160000], rate=58536.59/min [170000], rate=58620.69/min [180000], rate=59016.39/min [190000], rate=59375.00/min [200000], rate=59701.49/min [210000], rate=59433.96/min [220000], rate=60000.00/min [230000], rate=60526.32/min [240000], rate=60504.20/min [250000], rate=61224.49/min [260000], rate=58426.97/min [270000], rate=56842.11/min [280000], rate=55813.95/min [290000], rate=54716.98/min [300000], rate=53254.44/min [310000], rate=51955.31/min [320000], rate=51063.83/min [330000], rate=50899.74/min [340000], rate=50246.31/min [350000], rate=50119.33/min [360000], rate=49769.59/min [370000], rate=49775.78/min [380000], rate=49781.66/min [390000], rate=49681.53/min [400000], rate=49484.54/min [410000], rate=49496.98/min [420000], rate=49508.84/min [430000], rate=49330.78/min [440000], rate=49438.20/min [450000], rate=49270.07/min [460000], rate=49110.32/min [470000], rate=49300.70/min [480000], rate=49399.66/min [490000], rate=49578.41/min [500000], rate=49833.89/min [510000], rate=50163.93/min [520000], rate=50485.44/min [530000], rate=50880.00/min [540000], rate=51184.83/min [550000], rate=51643.19/min [560000], rate=51454.82/min [570000], rate=50000.00/min [580000], rate=48739.50/min [590000], rate=47453.08/min [600000], rate=46814.04/min [610000], rate=45979.90/min [620000], rate=45588.24/min [630000], rate=45107.40/min [640000], rate=44859.81/min [650000], rate=44469.78/min [660000], rate=44245.81/min [670000], rate=44030.67/min [680000], rate=43776.82/min [690000], rate=43578.95/min [700000], rate=43478.26/min [710000], rate=43425.08/min [720000], rate=43548.39/min [730000], rate=43625.50/min [740000], rate=43743.84/min [750000], rate=43774.32/min [760000], rate=43846.15/min [770000], rate=44000.00/min [780000], rate=44067.80/min [790000], rate=44216.42/min [800000], rate=44362.29/min [810000], rate=44464.78/min [820000], rate=44524.89/min [830000], rate=44583.71/min [840000], rate=44601.77/min [850000], rate=44776.12/min [860000], rate=44869.57/min [870000], rate=44768.44/min [880000], rate=44821.73/min [890000], rate=44798.66/min [900000], rate=44850.50/min [910000], rate=45012.37/min [920000], rate=44914.56/min [930000], rate=44855.31/min [940000], rate=44868.74/min [950000], rate=44635.87/min [960000], rate=44685.80/min [970000], rate=44769.23/min [980000], rate=44885.50/min [990000], rate=45171.10/min [1000000], rate=45385.78/min [1010000], rate=45529.68/min [1020000], rate=45400.59/min [1030000], rate=45508.10/min [1040000], rate=45447.92/min [1050000], rate=45389.05/min [1060000], rate=45396.15/min [1070000], rate=45403.11/min [1080000], rate=45378.15/min [1090000], rate=45479.83/min [1100000], rate=45360.82/min [1110000], rate=45213.85/min [1120000], rate=44889.78/min [1130000], rate=44517.40/min [1140000], rate=43511.45/min [1150000], rate=42857.14/min [1160000], rate=42778.12/min [1170000], rate=42187.50/min [1180000], rate=42293.91/min [1190000], rate=41950.65/min [1200000], rate=41690.79/min [1210000], rate=41391.11/min [1220000], rate=41216.22/min [1230000], rate=41275.17/min [1240000], rate=41425.39/min [1250000], rate=41597.34/min [1260000], rate=41675.85/min [1270000], rate=41730.56/min [1280000], rate=41334.77/min [1290000], rate=40672.62/min [1300000], rate=40456.43/min [1310000], rate=40557.28/min [1320000], rate=40657.08/min [1330000], rate=40693.52/min [1340000], rate=40791.48/min [1350000], rate=40867.81/min [1360000], rate=40943.30/min [1370000], rate=41017.96/min [1380000], rate=41173.55/min [1390000], rate=41307.58/min [1400000], rate=41379.31/min [1410000], rate=41429.97/min [1420000], rate=41500.24/min [1430000], rate=41569.77/min [1440000], rate=41658.63/min [1450000], rate=41766.68/min [1460000], rate=41873.80/min [1470000], rate=41940.09/min [1480000], rate=41965.97/min [1490000], rate=42070.59/min [1500000], rate=42194.09/min [1510000], rate=42257.46/min [1520000], rate=42300.56/min [1530000], rate=42382.27/min [1540000], rate=42443.73/min [1550000], rate=42427.01/min [1560000], rate=42448.98/min [1570000], rate=42470.69/min [1580000], rate=42473.12/min [1590000], rate=42494.43/min [1600000], rate=42534.34/min [1610000], rate=42517.61/min [1620000], rate=42538.29/min [1630000], rate=42632.96/min [1640000], rate=42671.29/min [1650000], rate=42271.56/min [1660000], rate=41901.56/min [1670000], rate=41645.89/min [1680000], rate=41396.30/min [1690000], rate=40887.10/min [1700000], rate=40444.09/min [1710000], rate=40031.21/min [1720000], rate=39631.34/min [1730000], rate=39362.91/min -building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=63157.89/min [30000], rate=66666.67/min [40000], rate=66666.67/min [50000], rate=68181.82/min [60000], rate=70588.24/min [70000], rate=71186.44/min [80000], rate=72727.27/min [90000], rate=72000.00/min [100000], rate=72289.16/min [110000], rate=72527.47/min [120000], rate=71287.13/min [130000], rate=70270.27/min [140000], rate=70000.00/min [150000], rate=61224.49/min [160000], rate=50261.78/min [170000], rate=44736.84/min [180000], rate=41538.46/min [190000], rate=38513.51/min [200000], rate=36474.16/min [210000], rate=36000.00/min [220000], rate=35483.87/min [230000], rate=35294.12/min [240000], rate=35207.82/min [250000], rate=35211.27/min [260000], rate=34513.27/min [270000], rate=33962.26/min [280000], rate=33466.14/min [290000], rate=33206.11/min [300000], rate=33088.24/min [310000], rate=32804.23/min [320000], rate=32933.10/min [330000], rate=33277.31/min [340000], rate=33663.37/min [350000], rate=34035.66/min [360000], rate=34123.22/min [370000], rate=34312.21/min [380000], rate=34493.19/min [390000], rate=34718.10/min [400000], rate=35139.09/min [410000], rate=35652.17/min [420000], rate=36206.90/min [430000], rate=36752.14/min [440000], rate=36871.51/min [450000], rate=36684.78/min [460000], rate=36556.29/min [470000], rate=36481.24/min [480000], rate=36409.61/min [490000], rate=36296.30/min [500000], rate=36275.70/min [510000], rate=36255.92/min [520000], rate=36236.93/min [530000], rate=36177.47/min [540000], rate=36160.71/min [550000], rate=36105.03/min [560000], rate=36090.23/min [570000], rate=36114.04/min [580000], rate=36212.28/min [590000], rate=36196.32/min [600000], rate=36144.58/min [610000], rate=36130.31/min [620000], rate=36257.31/min [630000], rate=36381.14/min [640000], rate=36501.90/min [650000], rate=36551.08/min [660000], rate=36632.75/min [670000], rate=36712.33/min [680000], rate=36690.65/min [690000], rate=36800.00/min [700000], rate=36971.83/min [710000], rate=37172.77/min [720000], rate=37305.70/min [730000], rate=37372.01/min [740000], rate=37500.00/min [750000], rate=37656.90/min [760000], rate=37842.32/min [770000], rate=38024.69/min [780000], rate=38110.75/min [790000], rate=38256.66/min [800000], rate=38369.30/min [810000], rate=38418.97/min [820000], rate=38437.50/min [830000], rate=38604.65/min [840000], rate=38769.23/min [850000], rate=38783.27/min [860000], rate=38767.84/min [870000], rate=38724.04/min [880000], rate=38766.52/min [890000], rate=38779.96/min [900000], rate=38793.10/min [910000], rate=38805.97/min [920000], rate=38873.24/min [930000], rate=38885.02/min [940000], rate=38977.19/min [950000], rate=39041.10/min [960000], rate=39103.87/min [970000], rate=39218.33/min [980000], rate=39383.79/min [990000], rate=39520.96/min [1000000], rate=39708.80/min [1010000], rate=39894.67/min [1020000], rate=40104.85/min [1030000], rate=40313.11/min [1040000], rate=40493.19/min [1050000], rate=40697.67/min [1060000], rate=40664.96/min [1070000], rate=40276.04/min [1080000], rate=39926.06/min [1090000], rate=39540.51/min [1100000], rate=39215.69/min [1110000], rate=38901.87/min [1120000], rate=38933.95/min [1130000], rate=39100.35/min [1140000], rate=39265.21/min [1150000], rate=39293.85/min [1160000], rate=39255.50/min [1170000], rate=39239.80/min [1180000], rate=39159.29/min [1190000], rate=39295.54/min [1200000], rate=39473.68/min [1210000], rate=39628.82/min [1220000], rate=39567.57/min [1230000], rate=39592.27/min [1240000], rate=39574.47/min [1250000], rate=39682.54/min [1260000], rate=39726.75/min [1270000], rate=39791.12/min [1280000], rate=39813.37/min [1290000], rate=39794.34/min [1300000], rate=39775.62/min [1310000], rate=39837.81/min [1320000], rate=39859.08/min [1330000], rate=40000.00/min [1340000], rate=40139.79/min [1350000], rate=40318.57/min [1360000], rate=40456.12/min [1370000], rate=40652.82/min [1380000], rate=40848.54/min [1390000], rate=41002.95/min [1400000], rate=41196.67/min [1410000], rate=41268.29/min [1420000], rate=41359.22/min [1430000], rate=41509.43/min [1440000], rate=41618.50/min [1450000], rate=41766.68/min [1460000], rate=41893.83/min [1470000], rate=42020.01/min [1480000], rate=42165.24/min [1490000], rate=42289.50/min [1500000], rate=42432.81/min [1510000], rate=42575.19/min [1520000], rate=42656.69/min [1530000], rate=41994.51/min [1540000], rate=41213.20/min [1550000], rate=40505.23/min [1560000], rate=39897.70/min [1570000], rate=39629.79/min [1580000], rate=39565.94/min [1590000], rate=39050.35/min [1600000], rate=38323.35/min [1610000], rate=37646.14/min [1620000], rate=37070.94/min [1630000], rate=36478.93/min [1640000], rate=36070.38/min [1650000], rate=35791.76/min [1660000], rate=35827.34/min [1670000], rate=35849.73/min [1680000], rate=35808.17/min [1690000], rate=35855.73/min [1700000], rate=35902.85/min [1710000], rate=35962.15/min [1720000], rate=36033.52/min [1730000], rate=36104.35/min [1740000], rate=36187.18/min [1750000], rate=36281.96/min [1760000], rate=36376.16/min -building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=66666.67/min [20000], rate=70588.24/min [30000], rate=72000.00/min [40000], rate=72727.27/min [50000], rate=60000.00/min [60000], rate=53731.34/min [70000], rate=50000.00/min [80000], rate=47058.82/min [90000], rate=46153.85/min [100000], rate=44776.12/min [110000], rate=44594.59/min [120000], rate=45000.00/min [130000], rate=45348.84/min [140000], rate=45901.64/min [150000], rate=46153.85/min [160000], rate=46601.94/min [170000], rate=47222.22/min [180000], rate=48000.00/min [190000], rate=48927.04/min [200000], rate=49792.53/min [210000], rate=50602.41/min [220000], rate=51361.87/min [230000], rate=49462.37/min [240000], rate=46451.61/min [250000], rate=44642.86/min [260000], rate=43575.42/min [270000], rate=42970.82/min [280000], rate=41687.34/min [290000], rate=40654.21/min [300000], rate=40178.57/min [310000], rate=39828.69/min [320000], rate=39103.87/min [330000], rate=38899.80/min [340000], rate=38857.14/min [350000], rate=38888.89/min [360000], rate=38918.92/min [370000], rate=38947.37/min [380000], rate=39242.69/min [390000], rate=39527.03/min [400000], rate=39933.44/min [410000], rate=40327.87/min [420000], rate=40645.16/min [430000], rate=41017.49/min [440000], rate=41314.55/min [450000], rate=41731.07/min [460000], rate=42137.40/min [470000], rate=42533.94/min [480000], rate=42921.01/min [490000], rate=43298.97/min [500000], rate=43731.78/min [510000], rate=44092.22/min [520000], rate=44255.32/min [530000], rate=43621.40/min [540000], rate=43373.49/min [550000], rate=43193.72/min [560000], rate=43298.97/min [570000], rate=43456.16/min [580000], rate=43283.58/min [590000], rate=43435.58/min [600000], rate=43583.54/min [610000], rate=43779.90/min [620000], rate=43559.72/min [630000], rate=43448.28/min [640000], rate=43389.83/min [650000], rate=43381.54/min [660000], rate=43326.04/min [670000], rate=43179.38/min [680000], rate=43083.42/min [690000], rate=43080.12/min [700000], rate=43121.15/min [710000], rate=43204.87/min [720000], rate=43286.57/min [730000], rate=43452.38/min [740000], rate=43614.93/min [750000], rate=43774.32/min [760000], rate=43973.00/min [770000], rate=44210.53/min [780000], rate=44444.44/min [790000], rate=44632.77/min [800000], rate=44901.78/min [810000], rate=45125.35/min [820000], rate=45429.36/min [830000], rate=45688.07/min [840000], rate=45569.62/min [850000], rate=45053.00/min [860000], rate=44636.68/min [870000], rate=44237.29/min [880000], rate=43926.79/min [890000], rate=43734.64/min [900000], rate=42993.63/min [910000], rate=42457.23/min [920000], rate=41754.92/min [930000], rate=41150.44/min [940000], rate=40899.20/min [950000], rate=40918.88/min [960000], rate=40735.50/min [970000], rate=40193.37/min [980000], rate=40109.14/min [990000], rate=40053.94/min [1000000], rate=39973.35/min [1010000], rate=40000.00/min [1020000], rate=39973.87/min [1030000], rate=39640.80/min [1040000], rate=39171.37/min [1050000], rate=38888.89/min [1060000], rate=38946.72/min [1070000], rate=39003.65/min [1080000], rate=38918.92/min [1090000], rate=38698.22/min [1100000], rate=38619.08/min [1110000], rate=38341.97/min [1120000], rate=37966.10/min [1130000], rate=37666.67/min [1140000], rate=37458.93/min [1150000], rate=37317.47/min [1160000], rate=37080.45/min [1170000], rate=36947.37/min [1180000], rate=36894.22/min [1190000], rate=37033.20/min [1200000], rate=36641.22/min [1210000], rate=36119.40/min [1220000], rate=35603.11/min [1230000], rate=35109.42/min [1240000], rate=34733.89/min [1250000], rate=34293.55/min [1260000], rate=33962.26/min [1270000], rate=33701.90/min [1280000], rate=33773.09/min [1290000], rate=33902.76/min [1300000], rate=34016.57/min [1310000], rate=34129.40/min [1320000], rate=34256.06/min [1330000], rate=34381.73/min [1340000], rate=34521.25/min [1350000], rate=34659.82/min [1360000], rate=34827.14/min [1370000], rate=34993.61/min [1380000], rate=35129.40/min [1390000], rate=35145.39/min [1400000], rate=35190.62/min [1410000], rate=35220.65/min [1420000], rate=35264.90/min [1430000], rate=35294.12/min [1440000], rate=35351.88/min [1450000], rate=35294.12/min [1460000], rate=35379.64/min [1470000], rate=35492.96/min [1480000], rate=35591.18/min [1490000], rate=35688.62/min [1500000], rate=35799.52/min [1510000], rate=35909.63/min [1520000], rate=36018.96/min [1530000], rate=36127.51/min [1540000], rate=36235.29/min [1550000], rate=36356.53/min [1560000], rate=36477.01/min [1570000], rate=36610.96/min [1580000], rate=36729.95/min [1590000], rate=36650.02/min [1600000], rate=36515.79/min [1610000], rate=36577.05/min [1620000], rate=36623.96/min [1630000], rate=36397.47/min [1640000], rate=36136.61/min [1650000], rate=35791.76/min [1660000], rate=35508.02/min [1670000], rate=35256.86/min [1680000], rate=35000.00/min [1690000], rate=34821.43/min [1700000], rate=34693.88/min [1710000], rate=34557.09/min [1720000], rate=34434.43/min [1730000], rate=34382.25/min [1740000], rate=34274.46/min [1750000], rate=34381.14/min [1760000], rate=34487.26/min -building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=100000.00/min [20000], rate=92307.69/min [30000], rate=112500.00/min [40000], rate=109090.91/min [50000], rate=96774.19/min [60000], rate=94736.84/min [70000], rate=95454.55/min [80000], rate=96000.00/min [90000], rate=90000.00/min [100000], rate=92307.69/min [110000], rate=92957.75/min [120000], rate=94736.84/min [130000], rate=93975.90/min [140000], rate=94382.02/min [150000], rate=95744.68/min [160000], rate=90566.04/min [170000], rate=61077.84/min [180000], rate=48000.00/min [190000], rate=40425.53/min [200000], rate=35502.96/min [210000], rate=33157.89/min [220000], rate=30136.99/min [230000], rate=28048.78/min [240000], rate=26470.59/min [250000], rate=25000.00/min [260000], rate=24375.00/min [270000], rate=23823.53/min [280000], rate=23268.70/min [290000], rate=22924.90/min [300000], rate=22727.27/min [310000], rate=22328.93/min [320000], rate=22094.36/min [330000], rate=22049.00/min [340000], rate=21959.10/min [350000], rate=21875.00/min [360000], rate=21928.93/min [370000], rate=22023.81/min [380000], rate=22071.64/min [390000], rate=22075.47/min [400000], rate=22140.22/min [410000], rate=22222.22/min [420000], rate=22360.25/min [430000], rate=22532.75/min [440000], rate=22699.91/min [450000], rate=22518.77/min [460000], rate=22678.72/min [470000], rate=22705.31/min [480000], rate=22820.92/min [490000], rate=22826.09/min [500000], rate=22918.26/min [510000], rate=23094.34/min [520000], rate=22974.96/min [530000], rate=22877.70/min [540000], rate=22784.81/min [550000], rate=22821.58/min [560000], rate=22935.15/min [570000], rate=23030.30/min [580000], rate=23169.11/min [590000], rate=23350.92/min [600000], rate=23560.21/min [610000], rate=23552.12/min [620000], rate=23574.14/min [630000], rate=23478.26/min [640000], rate=23357.66/min [650000], rate=23214.29/min [660000], rate=23431.95/min [670000], rate=23453.91/min [680000], rate=23597.46/min [690000], rate=23834.20/min [700000], rate=23972.60/min [710000], rate=24027.07/min [720000], rate=24228.83/min [730000], rate=24373.96/min [740000], rate=24503.31/min [750000], rate=24657.53/min [760000], rate=24595.47/min [770000], rate=24379.95/min [780000], rate=24148.61/min [790000], rate=24024.33/min [800000], rate=23940.15/min [810000], rate=23882.06/min [820000], rate=23756.64/min [830000], rate=23657.96/min [840000], rate=23584.46/min [850000], rate=23556.58/min [860000], rate=23486.57/min [870000], rate=23429.08/min [880000], rate=23383.53/min [890000], rate=23339.16/min [900000], rate=23326.13/min [910000], rate=23514.21/min [920000], rate=23690.99/min [930000], rate=23634.05/min [940000], rate=23608.20/min [950000], rate=23602.48/min [960000], rate=23625.92/min [970000], rate=23648.92/min [980000], rate=23671.50/min [990000], rate=23750.50/min [1000000], rate=23818.98/min [1010000], rate=23886.48/min [1020000], rate=23822.50/min [1030000], rate=23623.85/min [1040000], rate=23441.02/min [1050000], rate=23551.40/min [1060000], rate=23660.71/min [1070000], rate=23768.97/min [1080000], rate=23885.00/min [1090000], rate=23973.61/min [1100000], rate=24052.48/min [1110000], rate=24147.93/min [1120000], rate=24251.17/min [1130000], rate=24266.28/min [1140000], rate=24315.68/min [1150000], rate=24407.50/min [1160000], rate=24524.31/min [1170000], rate=24657.53/min [1180000], rate=24789.92/min [1190000], rate=24912.77/min [1200000], rate=24973.99/min [1210000], rate=24931.32/min [1220000], rate=24923.39/min [1230000], rate=24781.73/min [1240000], rate=24684.80/min [1250000], rate=24654.83/min [1260000], rate=24609.38/min [1270000], rate=24454.43/min [1280000], rate=24135.76/min [1290000], rate=23918.42/min [1300000], rate=23941.07/min [1310000], rate=23970.72/min [1320000], rate=23978.20/min [1330000], rate=23870.77/min [1340000], rate=23921.45/min [1350000], rate=23795.53/min [1360000], rate=23638.47/min [1370000], rate=23668.30/min [1380000], rate=23745.34/min [1390000], rate=23821.77/min [1400000], rate=23897.58/min [1410000], rate=23986.39/min [1420000], rate=24081.40/min [1430000], rate=24182.64/min [1440000], rate=24276.48/min [1450000], rate=24328.86/min [1460000], rate=24279.38/min [1470000], rate=24244.09/min [1480000], rate=24209.38/min [1490000], rate=24175.23/min [1500000], rate=24187.05/min [1510000], rate=24198.72/min [1520000], rate=24158.94/min [1530000], rate=24119.81/min [1540000], rate=24163.18/min [1550000], rate=24256.65/min [1560000], rate=24355.97/min [1570000], rate=24454.83/min [1580000], rate=24565.95/min [1590000], rate=24676.67/min [1600000], rate=24780.59/min [1610000], rate=24884.08/min [1620000], rate=24929.47/min [1630000], rate=24974.46/min [1640000], rate=25025.43/min [1650000], rate=25114.16/min [1660000], rate=25196.05/min [1670000], rate=25264.75/min [1680000], rate=25339.37/min [1690000], rate=25419.90/min [1700000], rate=25506.38/min [1710000], rate=25598.80/min [1720000], rate=25690.81/min [1730000], rate=25788.82/min [1740000], rate=25886.44/min [1750000], rate=25990.10/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir --filt_file /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 6000000.00 reads per min processed... 4500000.00 reads per min processed... 4000000.00 reads per min processed... 3750000.00 reads per min processed... 3600000.00 reads per min processed... 3500000.00 reads per min processed... 3428571.43 reads per min processed... 3375000.00 reads per min processed... 3333333.33 reads per min processed... 3300000.00 reads per min processed... 3428571.43 reads per min processed... 3250000.00 reads per min processed... 3230769.23 reads per min processed... 3214285.71 reads per min processed... 3200000.00 reads per min processed... 3090909.09 reads per min processed... 3176470.59 reads per min processed... 3166666.67 reads per min processed... 3157894.74 reads per min processed... 3230769.23 reads per min processed... 3219512.20 reads per min processed... 3209302.33 reads per min processed... 3272727.27 reads per min processed... 3260869.57 reads per min processed... 3250000.00 reads per min processed... 3240000.00 reads per min processed... 3230769.23 reads per min processed... 3222222.22 reads per min processed... 3214285.71 reads per min processed... 3206896.55 reads per min processed... 3254237.29 reads per min processed... 3245901.64 reads per min processed... 3290322.58 reads per min processed... 3281250.00 reads per min processed... 3272727.27 reads per min processed... 3264705.88 reads per min processed... 3257142.86 reads per min processed... 3250000.00 reads per min processed... 3243243.24 reads per min processed... 3236842.11 reads per min processed... 3230769.23 reads per min processed... 3225000.00 reads per min processed... 3219512.20 reads per min processed... 3214285.71 reads per min processed... 3209302.33 reads per min processed... 3204545.45 reads per min processed... 3200000.00 reads per min processed... 3195652.17 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.RCj0AEj3sg/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -607487.912312 EM: Round [1] log likelihood: -607163.681078 EM: Round [2] log likelihood: -607065.719098 EM: Round [3] log likelihood: -607022.206743 EM: Round [4] log likelihood: -606999.391809 EM: Round [5] log likelihood: -606986.135565 EM: Round [6] log likelihood: -606977.840647 EM: Round [7] log likelihood: -606972.330588 EM: Round [8] log likelihood: -606968.482671 EM: Round [9] log likelihood: -606965.680639 EM: Round [10] log likelihood: -606963.568056 EM: Round [11] log likelihood: -606961.928847 EM: Round [12] log likelihood: -606960.626310 EM: Round [13] log likelihood: -606959.570569 EM: Round [14] log likelihood: -606958.700469 EM: Round [15] log likelihood: -606957.973135 EM: Round [16] log likelihood: -606957.357700 EM: Round [17] log likelihood: -606956.831436 EM: Round [18] log likelihood: -606956.377264 EM: Round [19] log likelihood: -606955.982126 EM: Round [20] log likelihood: -606955.635883 EM: Round [21] log likelihood: -606955.330548 EM: Round [22] log likelihood: -606955.059753 EM: Round [23] log likelihood: -606954.818365 EM: Round [24] log likelihood: -606954.602196 EM: Round [25] log likelihood: -606954.407806 EM: Round [26] log likelihood: -606954.232337 EM: Round [27] log likelihood: -606954.073399 EM: Round [28] log likelihood: -606953.928978 EM: Round [29] log likelihood: -606953.797367 EM: Round [30] log likelihood: -606953.677107 EM: Round [31] log likelihood: -606953.566946 EM: Round [32] log likelihood: -606953.465802 EM: Round [33] log likelihood: -606953.372737 EM: Round [34] log likelihood: -606953.286934 EM: Round [35] log likelihood: -606953.207677 EM: Round [36] log likelihood: -606953.134337 EM: Round [37] log likelihood: -606953.066358 EM: Round [38] log likelihood: -606953.003250 EM: Round [39] log likelihood: -606952.944575 EM: Round [40] log likelihood: -606952.889944 EM: Round [41] log likelihood: -606952.839011 EM: Round [42] log likelihood: -606952.791463 EM: Round [43] log likelihood: -606952.747021 EM: Round [44] log likelihood: -606952.705433 EM: Round [45] log likelihood: -606952.666471 EM: Round [46] log likelihood: -606952.629930 EM: Round [47] log likelihood: -606952.595624 EM: Round [48] log likelihood: -606952.563384 EM: Round [49] log likelihood: -606952.533055 EM: Round [50] log likelihood: -606952.504498 EM: Round [51] log likelihood: -606952.477584 EM: Round [52] log likelihood: -606952.452197 EM: Round [53] log likelihood: -606952.428229 EM: Round [54] log likelihood: -606952.405582 EM: Round [55] log likelihood: -606952.384167 EM: Round [56] log likelihood: -606952.363900 EM: Round [57] log likelihood: -606952.344705 EM: Round [58] log likelihood: -606952.326512 EM: Round [59] log likelihood: -606952.309256 EM: Round [60] log likelihood: -606952.292877 EM: Round [61] log likelihood: -606952.277320 EM: Round [62] log likelihood: -606952.262533 EM: Round [63] log likelihood: -606952.248469 EM: Round [64] log likelihood: -606952.235085 EM: Round [65] log likelihood: -606952.222338 EM: Round [66] log likelihood: -606952.210192 EM: Round [67] log likelihood: -606952.198611 EM: Round [68] log likelihood: -606952.187562 EM: Round [69] log likelihood: -606952.177014 EM: Round [70] log likelihood: -606952.166939 EM: Round [71] log likelihood: -606952.157311 EM: Round [72] log likelihood: -606952.148104 EM: Round [73] log likelihood: -606952.139295 EM: Round [74] log likelihood: -606952.130863 EM: Round [75] log likelihood: -606952.122787 EM: Round [76] log likelihood: -606952.115047 EM: Round [77] log likelihood: -606952.107628 EM: Round [78] log likelihood: -606952.100510 EM: Round [79] log likelihood: -606952.093680 EM: Round [80] log likelihood: -606952.087122 EM: Round [81] log likelihood: -606952.080822 EM: Round [82] log likelihood: -606952.074768 EM: Round [83] log likelihood: -606952.068946 EM: Round [84] log likelihood: -606952.063346 EM: Round [85] log likelihood: -606952.057957 EM: Round [86] log likelihood: -606952.052768 EM: Round [87] log likelihood: -606952.047770 EM: Round [88] log likelihood: -606952.042954 EM: Round [89] log likelihood: -606952.038311 EM: Round [90] log likelihood: -606952.033833 EM: Round [91] log likelihood: -606952.029513 EM: Round [92] log likelihood: -606952.025343 EM: Round [93] log likelihood: -606952.021316 EM: Round [94] log likelihood: -606952.017426 EM: Round [95] log likelihood: -606952.013667 EM: Round [96] log likelihood: -606952.010033 EM: Round [97] log likelihood: -606952.006518 EM: Round [98] log likelihood: -606952.003118 EM: Round [99] log likelihood: -606951.999828 EM: Round [100] log likelihood: -606951.996642 EM: Round [101] log likelihood: -606951.993556 EM: Round [102] log likelihood: -606951.990566 EM: Round [103] log likelihood: -606951.987668 EM: Round [104] log likelihood: -606951.984859 EM: Round [105] log likelihood: -606951.982134 EM: Round [106] log likelihood: -606951.979491 EM: Round [107] log likelihood: -606951.976925 EM: Round [108] log likelihood: -606951.974434 EM: Round [109] log likelihood: -606951.972015 EM: Round [110] log likelihood: -606951.969665 EM: Round [111] log likelihood: -606951.967382 EM: Round [112] log likelihood: -606951.965162 EM: Round [113] log likelihood: -606951.963004 EM: Round [114] log likelihood: -606951.960904 EM: Round [115] log likelihood: -606951.958861 EM: Round [116] log likelihood: -606951.956873 EM: Round [117] log likelihood: -606951.954938 EM: Round [118] log likelihood: -606951.953053 EM: Round [119] log likelihood: -606951.951217 EM: Round [120] log likelihood: -606951.949429 EM: Round [121] log likelihood: -606951.947685 EM: Round [122] log likelihood: -606951.945986 EM: Round [123] log likelihood: -606951.944328 EM: Round [124] log likelihood: -606951.942712 EM: Round [125] log likelihood: -606951.941134 EM: Round [126] log likelihood: -606951.939595 EM: Round [127] log likelihood: -606951.938093 EM: Round [128] log likelihood: -606951.936626 EM: Round [129] log likelihood: -606951.935193 EM: Round [130] log likelihood: -606951.933793 EM: Round [131] log likelihood: -606951.932426 EM: Round [132] log likelihood: -606951.931089 EM: Round [133] log likelihood: -606951.929782 EM: Round [134] log likelihood: -606951.928505 EM: Round [135] log likelihood: -606951.927255 EM: Round [136] log likelihood: -606951.926033 EM: Round [137] log likelihood: -606951.924837 EM: Round [138] log likelihood: -606951.923667 EM: Round [139] log likelihood: -606951.922521 EM: Round [140] log likelihood: -606951.921400 EM: Round [141] log likelihood: -606951.920302 EM: Round [142] log likelihood: -606951.919226 EM: Round [143] log likelihood: -606951.918172 EM: Round [144] log likelihood: -606951.917140 EM: Round [145] log likelihood: -606951.916128 EM: Round [146] log likelihood: -606951.915136 EM: Round [147] log likelihood: -606951.914164 EM: Round [148] log likelihood: -606951.913210 EM: Round [149] log likelihood: -606951.912275 EM: Round [150] log likelihood: -606951.911358 EM: Round [151] log likelihood: -606951.910458 EM: Round [152] log likelihood: -606951.909575 EM: Round [153] log likelihood: -606951.908709 EM: Round [154] log likelihood: -606951.907858 EM: Round [155] log likelihood: -606951.907023 EM: Round [156] log likelihood: -606951.906203 EM: Round [157] log likelihood: -606951.905398 EM: Round [158] log likelihood: -606951.904608 EM: Round [159] log likelihood: -606951.903831 EM: Round [160] log likelihood: -606951.903068 EM: Round [161] log likelihood: -606951.902318 EM: Round [162] log likelihood: -606951.901582 EM: Round [163] log likelihood: -606951.900858 EM: Round [164] log likelihood: -606951.900146 EM: Round [165] log likelihood: -606951.899446 EM: Round [166] log likelihood: -606951.898758 EM: Round [167] log likelihood: -606951.898081 EM: Round [168] log likelihood: -606951.897416 EM: Round [169] log likelihood: -606951.896762 EM: Round [170] log likelihood: -606951.896118 EM: Round [171] log likelihood: -606951.895484 EM: Round [172] log likelihood: -606951.894861 EM: Round [173] log likelihood: -606951.894248 EM: Round [174] log likelihood: -606951.893644 EM: Round [175] log likelihood: -606951.893050 EM: Round [176] log likelihood: -606951.892466 EM: Round [177] log likelihood: -606951.891890 EM: Round [178] log likelihood: -606951.891323 EM: Round [179] log likelihood: -606951.890765 EM: Round [180] log likelihood: -606951.890216 EM: Round [181] log likelihood: -606951.889674 EM: Round [182] log likelihood: -606951.889141 EM: Round [183] log likelihood: -606951.888616 EM: Round [184] log likelihood: -606951.888099 EM: Round [185] log likelihood: -606951.887590 EM: Round [186] log likelihood: -606951.887088 EM: Round [187] log likelihood: -606951.886593 EM: Round [188] log likelihood: -606951.886105 EM: Round [189] log likelihood: -606951.885625 EM: Round [190] log likelihood: -606951.885152 EM: Round [191] log likelihood: -606951.884685 EM: Round [192] log likelihood: -606951.884225 EM: Round [193] log likelihood: -606951.883772 EM: Round [194] log likelihood: -606951.883325 EM: Round [195] log likelihood: -606951.882884 EM: Round [196] log likelihood: -606951.882450 EM: Round [197] log likelihood: -606951.882021 EM: Round [198] log likelihood: -606951.881599 EM: Round [199] log likelihood: -606951.881182 EM: Round [200] log likelihood: -606951.880771 EM: Round [201] log likelihood: -606951.880366 EM: Round [202] log likelihood: -606951.879966 EM: Round [203] log likelihood: -606951.879572 EM: Round [204] log likelihood: -606951.879183 EM: Round [205] log likelihood: -606951.878800 EM: Round [206] log likelihood: -606951.878421 EM: Round [207] log likelihood: -606951.878048 EM: Round [208] log likelihood: -606951.877680 EM: Round [209] log likelihood: -606951.877316 EM: Round [210] log likelihood: -606951.876958 EM: Round [211] log likelihood: -606951.876604 EM: Round [212] log likelihood: -606951.876255 EM: Round [213] log likelihood: -606951.875910 EM: Round [214] log likelihood: -606951.875570 EM: Round [215] log likelihood: -606951.875234 EM: Round [216] log likelihood: -606951.874903 EM: Round [217] log likelihood: -606951.874576 EM: Round [218] log likelihood: -606951.874254 EM: Round [219] log likelihood: -606951.873935 EM: Round [220] log likelihood: -606951.873621 EM: Round [221] log likelihood: -606951.873310 EM: Round [222] log likelihood: -606951.873004 EM: Round [223] log likelihood: -606951.872702 EM: Round [224] log likelihood: -606951.872403 EM: Round [225] log likelihood: -606951.872108 EM: Round [226] log likelihood: -606951.871817 EM: Round [227] log likelihood: -606951.871530 EM: Round [228] log likelihood: -606951.871247 EM: Round [229] log likelihood: -606951.870967 EM: Round [230] log likelihood: -606951.870690 EM: Round [231] log likelihood: -606951.870417 EM: Round [232] log likelihood: -606951.870147 EM: Round [233] log likelihood: -606951.869881 EM: Round [234] log likelihood: -606951.869618 EM: Round [235] log likelihood: -606951.869359 EM: Round [236] log likelihood: -606951.869102 EM: Round [237] log likelihood: -606951.868849 EM: Round [238] log likelihood: -606951.868599 EM: Round [239] log likelihood: -606951.868352 EM: Round [240] log likelihood: -606951.868109 EM: Round [241] log likelihood: -606951.867868 EM: Round [242] log likelihood: -606951.867630 EM: Round [243] log likelihood: -606951.867395 EM: Round [244] log likelihood: -606951.867163 EM: Round [245] log likelihood: -606951.866934 EM: Round [246] log likelihood: -606951.866708 EM: Round [247] log likelihood: -606951.866484 EM: Round [248] log likelihood: -606951.866263 EM: Round [249] log likelihood: -606951.866045 EM: Round [250] log likelihood: -606951.865830 EM: Round [251] log likelihood: -606951.865617 EM: Round [252] log likelihood: -606951.865407 EM: Round [253] log likelihood: -606951.865199 EM: Round [254] log likelihood: -606951.864994 EM: Round [255] log likelihood: -606951.864792 EM: Round [256] log likelihood: -606951.864592 EM: Round [257] log likelihood: -606951.864394 EM: Round [258] log likelihood: -606951.864199 EM: Round [259] log likelihood: -606951.864006 EM: Round [260] log likelihood: -606951.863815 EM: Round [261] log likelihood: -606951.863627 EM: Round [262] log likelihood: -606951.863441 EM: Round [263] log likelihood: -606951.863257 EM: Round [264] log likelihood: -606951.863076 EM: Round [265] log likelihood: -606951.862896 EM: Round [266] log likelihood: -606951.862719 EM: Round [267] log likelihood: -606951.862544 EM: Round [268] log likelihood: -606951.862371 EM: Round [269] log likelihood: -606951.862200 EM: Round [270] log likelihood: -606951.862032 EM: Round [271] log likelihood: -606951.861865 EM: Round [272] log likelihood: -606951.861700 EM: Round [273] log likelihood: -606951.861537 EM: Round [274] log likelihood: -606951.861376 EM: Round [275] log likelihood: -606951.861218 EM: Round [276] log likelihood: -606951.861061 EM: Round [277] log likelihood: -606951.860905 EM: Round [278] log likelihood: -606951.860752 EM: Round [279] log likelihood: -606951.860601 EM: Round [280] log likelihood: -606951.860451 EM: Round [281] log likelihood: -606951.860303 EM: Round [282] log likelihood: -606951.860157 EM: Round [283] log likelihood: -606951.860013 EM: Round [284] log likelihood: -606951.859870 EM: Round [285] log likelihood: -606951.859730 EM: Round [286] log likelihood: -606951.859590 EM: Round [287] log likelihood: -606951.859453 EM: Round [288] log likelihood: -606951.859317 EM: Round [289] log likelihood: -606951.859183 EM: Round [290] log likelihood: -606951.859050 EM: Round [291] log likelihood: -606951.858919 EM: Round [292] log likelihood: -606951.858789 EM: Round [293] log likelihood: -606951.858661 EM: Round [294] log likelihood: -606951.858535 EM: Round [295] log likelihood: -606951.858410 EM: Round [296] log likelihood: -606951.858286 EM: Round [297] log likelihood: -606951.858164 EM: Round [298] log likelihood: -606951.858044 EM: Round [299] log likelihood: -606951.857925 EM: Round [300] log likelihood: -606951.857807 EM: Round [301] log likelihood: -606951.857691 EM: Round [302] log likelihood: -606951.857576 EM: Round [303] log likelihood: -606951.857462 EM: Round [304] log likelihood: -606951.857350 EM: Round [305] log likelihood: -606951.857239 EM: Round [306] log likelihood: -606951.857129 EM: Round [307] log likelihood: -606951.857021 EM: Round [308] log likelihood: -606951.856914 EM: Round [309] log likelihood: -606951.856808 EM: Round [310] log likelihood: -606951.856704 EM: Round [311] log likelihood: -606951.856601 EM: Round [312] log likelihood: -606951.856498 EM: Round [313] log likelihood: -606951.856398 EM: Round [314] log likelihood: -606951.856298 EM: Stopping iterations at round 314 due to insufficient improvement in likelihood. EM: Starting log likelihood: -600155.797235 EM: Round [1] log likelihood: -599907.589748 EM: Round [2] log likelihood: -599832.777657 EM: Round [3] log likelihood: -599800.508180 EM: Round [4] log likelihood: -599784.161082 EM: Round [5] log likelihood: -599775.000574 EM: Round [6] log likelihood: -599769.476448 EM: Round [7] log likelihood: -599765.935419 EM: Round [8] log likelihood: -599763.541159 EM: Round [9] log likelihood: -599761.845523 EM: Round [10] log likelihood: -599760.596424 EM: Round [11] log likelihood: -599759.645543 EM: Round [12] log likelihood: -599758.901819 EM: Round [13] log likelihood: -599758.307051 EM: Round [14] log likelihood: -599757.822636 EM: Round [15] log likelihood: -599757.422085 EM: Round [16] log likelihood: -599757.086670 EM: Round [17] log likelihood: -599756.802786 EM: Round [18] log likelihood: -599756.560320 EM: Round [19] log likelihood: -599756.351599 EM: Round [20] log likelihood: -599756.170692 EM: Round [21] log likelihood: -599756.012949 EM: Round [22] log likelihood: -599755.874666 EM: Round [23] log likelihood: -599755.752862 EM: Round [24] log likelihood: -599755.645109 EM: Round [25] log likelihood: -599755.549411 EM: Round [26] log likelihood: -599755.464113 EM: Round [27] log likelihood: -599755.387832 EM: Round [28] log likelihood: -599755.319405 EM: Round [29] log likelihood: -599755.257847 EM: Round [30] log likelihood: -599755.202319 EM: Round [31] log likelihood: -599755.152103 EM: Round [32] log likelihood: -599755.106583 EM: Round [33] log likelihood: -599755.065225 EM: Round [34] log likelihood: -599755.027568 EM: Round [35] log likelihood: -599754.993210 EM: Round [36] log likelihood: -599754.961799 EM: Round [37] log likelihood: -599754.933029 EM: Round [38] log likelihood: -599754.906628 EM: Round [39] log likelihood: -599754.882359 EM: Round [40] log likelihood: -599754.860013 EM: Round [41] log likelihood: -599754.839402 EM: Round [42] log likelihood: -599754.820362 EM: Round [43] log likelihood: -599754.802745 EM: Round [44] log likelihood: -599754.786421 EM: Round [45] log likelihood: -599754.771273 EM: Round [46] log likelihood: -599754.757197 EM: Round [47] log likelihood: -599754.744097 EM: Round [48] log likelihood: -599754.731891 EM: Round [49] log likelihood: -599754.720502 EM: Round [50] log likelihood: -599754.709862 EM: Round [51] log likelihood: -599754.699910 EM: Round [52] log likelihood: -599754.690589 EM: Round [53] log likelihood: -599754.681850 EM: Round [54] log likelihood: -599754.673646 EM: Round [55] log likelihood: -599754.665937 EM: Round [56] log likelihood: -599754.658684 EM: Round [57] log likelihood: -599754.651854 EM: Round [58] log likelihood: -599754.645416 EM: Round [59] log likelihood: -599754.639340 EM: Round [60] log likelihood: -599754.633601 EM: Round [61] log likelihood: -599754.628175 EM: Round [62] log likelihood: -599754.623040 EM: Round [63] log likelihood: -599754.618177 EM: Round [64] log likelihood: -599754.613567 EM: Round [65] log likelihood: -599754.609193 EM: Round [66] log likelihood: -599754.605040 EM: Round [67] log likelihood: -599754.601094 EM: Round [68] log likelihood: -599754.597342 EM: Round [69] log likelihood: -599754.593771 EM: Round [70] log likelihood: -599754.590370 EM: Round [71] log likelihood: -599754.587130 EM: Round [72] log likelihood: -599754.584040 EM: Round [73] log likelihood: -599754.581092 EM: Round [74] log likelihood: -599754.578277 EM: Round [75] log likelihood: -599754.575589 EM: Round [76] log likelihood: -599754.573019 EM: Round [77] log likelihood: -599754.570561 EM: Round [78] log likelihood: -599754.568210 EM: Round [79] log likelihood: -599754.565959 EM: Round [80] log likelihood: -599754.563804 EM: Round [81] log likelihood: -599754.561738 EM: Round [82] log likelihood: -599754.559758 EM: Round [83] log likelihood: -599754.557860 EM: Round [84] log likelihood: -599754.556038 EM: Round [85] log likelihood: -599754.554290 EM: Round [86] log likelihood: -599754.552611 EM: Round [87] log likelihood: -599754.550999 EM: Round [88] log likelihood: -599754.549450 EM: Round [89] log likelihood: -599754.547962 EM: Round [90] log likelihood: -599754.546530 EM: Round [91] log likelihood: -599754.545154 EM: Round [92] log likelihood: -599754.543830 EM: Round [93] log likelihood: -599754.542556 EM: Round [94] log likelihood: -599754.541330 EM: Round [95] log likelihood: -599754.540150 EM: Round [96] log likelihood: -599754.539013 EM: Round [97] log likelihood: -599754.537918 EM: Round [98] log likelihood: -599754.536863 EM: Round [99] log likelihood: -599754.535846 EM: Round [100] log likelihood: -599754.534867 EM: Round [101] log likelihood: -599754.533922 EM: Round [102] log likelihood: -599754.533011 EM: Round [103] log likelihood: -599754.532133 EM: Round [104] log likelihood: -599754.531286 EM: Round [105] log likelihood: -599754.530469 EM: Round [106] log likelihood: -599754.529680 EM: Round [107] log likelihood: -599754.528920 EM: Round [108] log likelihood: -599754.528185 EM: Round [109] log likelihood: -599754.527476 EM: Round [110] log likelihood: -599754.526792 EM: Round [111] log likelihood: -599754.526131 EM: Round [112] log likelihood: -599754.525493 EM: Round [113] log likelihood: -599754.524877 EM: Round [114] log likelihood: -599754.524281 EM: Round [115] log likelihood: -599754.523706 EM: Round [116] log likelihood: -599754.523151 EM: Round [117] log likelihood: -599754.522614 EM: Round [118] log likelihood: -599754.522095 EM: Round [119] log likelihood: -599754.521594 EM: Round [120] log likelihood: -599754.521109 EM: Round [121] log likelihood: -599754.520641 EM: Round [122] log likelihood: -599754.520188 EM: Round [123] log likelihood: -599754.519750 EM: Round [124] log likelihood: -599754.519327 EM: Round [125] log likelihood: -599754.518918 EM: Round [126] log likelihood: -599754.518522 EM: Round [127] log likelihood: -599754.518140 EM: Round [128] log likelihood: -599754.517769 EM: Round [129] log likelihood: -599754.517412 EM: Round [130] log likelihood: -599754.517065 EM: Round [131] log likelihood: -599754.516730 EM: Round [132] log likelihood: -599754.516407 EM: Round [133] log likelihood: -599754.516093 EM: Round [134] log likelihood: -599754.515790 EM: Round [135] log likelihood: -599754.515496 EM: Round [136] log likelihood: -599754.515213 EM: Round [137] log likelihood: -599754.514938 EM: Round [138] log likelihood: -599754.514672 EM: Round [139] log likelihood: -599754.514415 EM: Round [140] log likelihood: -599754.514166 EM: Round [141] log likelihood: -599754.513925 EM: Round [142] log likelihood: -599754.513692 EM: Round [143] log likelihood: -599754.513466 EM: Round [144] log likelihood: -599754.513248 EM: Round [145] log likelihood: -599754.513036 EM: Round [146] log likelihood: -599754.512831 EM: Round [147] log likelihood: -599754.512633 EM: Round [148] log likelihood: -599754.512441 EM: Round [149] log likelihood: -599754.512256 EM: Round [150] log likelihood: -599754.512076 EM: Round [151] log likelihood: -599754.511902 EM: Round [152] log likelihood: -599754.511733 EM: Round [153] log likelihood: -599754.511570 EM: Round [154] log likelihood: -599754.511412 EM: Round [155] log likelihood: -599754.511258 EM: Round [156] log likelihood: -599754.511110 EM: Round [157] log likelihood: -599754.510967 EM: Round [158] log likelihood: -599754.510828 EM: Round [159] log likelihood: -599754.510693 EM: Round [160] log likelihood: -599754.510563 EM: Round [161] log likelihood: -599754.510436 EM: Round [162] log likelihood: -599754.510314 EM: Round [163] log likelihood: -599754.510196 EM: Round [164] log likelihood: -599754.510081 EM: Round [165] log likelihood: -599754.509970 EM: Round [166] log likelihood: -599754.509862 EM: Round [167] log likelihood: -599754.509758 EM: Round [168] log likelihood: -599754.509657 EM: Round [169] log likelihood: -599754.509559 EM: Stopping iterations at round 169 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir