File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/dc0fd3fd96dd139754d41e8c33b15f/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:18:20Z thread 413 Sample sheet being processed by common lib? Yes
2026-06-08T06:18:20Z thread 413 SampleSheet Settings: 
2026-06-08T06:18:20Z thread 413   FastqCompressionFormat = gzip
2026-06-08T06:18:20Z thread 413   NoLaneSplitting = FALSE
2026-06-08T06:18:20Z thread 413   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:18:20Z thread 413   SoftwareVersion = 4.3.6
2026-06-08T06:18:20Z thread 413 
2026-06-08T06:18:20Z thread 413 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:18:20Z thread 413 shared-thread-linux-native-asio output is disabled
2026-06-08T06:18:20Z thread 413 bcl-convert Version 4.4.6
2026-06-08T06:18:20Z thread 413 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:18:20Z thread 413 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:18:20Z thread 413 Conversion Begins.
2026-06-08T06:18:20Z thread 413 Input BCL Information:
2026-06-08T06:18:20Z thread 413     Read Structure: 2026-06-08T06:18:20Z thread 413 Y1512026-06-08T06:18:20Z thread 413 ;2026-06-08T06:18:20Z thread 413 I102026-06-08T06:18:20Z thread 413 ;2026-06-08T06:18:20Z thread 413 I102026-06-08T06:18:20Z thread 413 ;2026-06-08T06:18:20Z thread 413 Y1512026-06-08T06:18:20Z thread 413 
2026-06-08T06:18:20Z thread 413     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:18:20Z thread 413     BCL file format: cbcl
2026-06-08T06:18:20Z thread 413     Positions file format: slocs
2026-06-08T06:18:20Z thread 413     Filter file format: filter
2026-06-08T06:18:20Z thread 413 Conversion Information:
2026-06-08T06:18:20Z thread 413     Tile filtering: converting 784/6272 tiles
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 1: 96
2026-06-08T06:18:20Z thread 413     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 2: 96
2026-06-08T06:18:20Z thread 413     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 3: 96
2026-06-08T06:18:20Z thread 413     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 4: 96
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 5: 96
2026-06-08T06:18:20Z thread 413     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 6: 96
2026-06-08T06:18:20Z thread 413     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 7: 96
2026-06-08T06:18:20Z thread 413     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:20Z thread 413     Sample Count for Lane 8: 96
2026-06-08T06:18:20Z thread 413     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:20Z thread 413     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:18:20Z thread 413 # CPU hw threads available: 64
2026-06-08T06:18:20Z thread 413 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:18:21Z thread 413 SW compressors: 64
2026-06-08T06:18:21Z thread 413 SW decompressors: 32
2026-06-08T06:18:21Z thread 413 SW FASTQ compression level: 1
2026-06-08T06:49:50Z thread 413 Lane 4 Post-run Information:
2026-06-08T06:49:50Z thread 413     Total clusters: 4038106205
2026-06-08T06:49:50Z thread 413     Total Genomic Reads: 8076212410
2026-06-08T06:49:50Z thread 413     Total Genomic Input Gigabases 1219.51
2026-06-08T06:49:50Z thread 413     Minimum reads for a sample: 242386
2026-06-08T06:49:50Z thread 413     Maximum reads for a sample: 142869516
2026-06-08T06:49:50Z thread 413     Average reads per sample: 77749191.15
2026-06-08T06:49:50Z thread 413     Undetermined reads: 612290060
2026-06-08T06:49:51Z thread 413 Conversion Complete.