File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0018/B23WHYVLT4/nfcore_rnafusion__fd1be10--20260514-142812/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0018_2-fd1be10
- Published
- May 14, 2026 7:49 PM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | IS_CONTAMINATED | CONTAMINATION_PCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_B23WHYVLT4_1 | 9999000000.0 | 298837526.0 | 168.7 | 153.0 | 0.02 | 1.91 | 0.86 | 0.0 | 0.04 | 5.44 | 1.2 | 0.0 | Yes | 65.1 | 196898000.0 | 0.005484 | 0.315708 | 134735675.0 | 0.946854 | 0.974039 | 0.045132 | 0.025961 | 127575043.0 | 64574083.0 | 6080844.0 | 1721068.0 | 279.652019 | 101.0 | 0.634195 | 0.502263 | 0.977352 | 0.0 | 303 | 916.9249210000002 | 0.317449 | 0.0 | 97.54159999999999 | 91.15852041120554 | 96.15 | 94662629.0 | 23.5677 | 0.97646 | 26314323551.0 | 196898000.0 | 0.535793 | 98.449 | 40.045405 | |||||||||
| NTC_0001_0001_B23WHYVLT4_1 | 9999000000.0 | 45440.0 | 44.7 | 31.0 | 0.0 | 0.0 | 0.35 | 0.0 | 0.0 | 0.0 | 1.1 | 0.0 | Skipped | N/A | 46656.0 | 0.642618 | 0.183685 | 38086.0 | 0.007431 | 0.038275 | 0.205351 | 0.961725 | 283.0 | 150.0 | 7821.0 | 3769.0 | 0.000418 | 0.0 | 0.0 | 0.0 | 0.829749 | 0.0 | 67 | 69.131051 | 0.513974 | 0.0478 | 20.4379 | 4.758515343212918 | 10.3 | 2403.0 | 65.8145 | 0.842685 | 4604474.0 | 46656.0 | 0.688286 | 2.4303367028973804 | 50.13361226086531 |
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