File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0018/B23WHYVLT4/nfcore_rnafusion__fd1be10--20260514-142812/QC_run_metrics/intermediate/run_level_intermediate.tsv
Size
2.5 KB
Workflow Run
dev_rna_exp0018_2-fd1be10
Published
May 14, 2026 7:50 PM

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 79.364 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 93.6048 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 92.595 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9777.375596968 bclconvert
NTC_0001_0001_B23WHYVLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 959867 bclconvert
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 406013954 bclconvert
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.946854 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.974039 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.045132 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.025961 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 127575043.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 64574083.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 6080844.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 1721068.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 94662629.0 star
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005484 star
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 153.0 kallisto
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.04 kallisto
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 5.44 kallisto
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 65.1 contamination
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 101 fusion
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 101 fusion
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