File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0019/A23WJ53LT4/nfcore_rnafusion__3e501777--20260519-110950/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0019_2-3e501777
- Published
- May 19, 2026 5:08 PM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | IS_CONTAMINATED | CONTAMINATION_PCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_A23WJ53LT4_1 | 9999000000.0 | 435027177.0 | 593416976.0 | 0.004189 | 0.44865 | 327180237.0 | 0.945179 | 0.973267 | 0.047223 | 0.026733 | 309243946.0 | 157035984.0 | 15450490.0 | 4313353.0 | 678.53092 | 264.0 | 0.712294 | 0.613436 | 0.975181 | 0.0 | Yes | 63.56 | 173.7 | 155.0 | 0.01 | 1.72 | 0.78 | 0.0 | 0.02 | 4.96 | 1.1 | 0.0 | 287 | 807.574032 | 0.450538 | 0.0 | 97.6885 | 91.03299875321032 | 96.42 | 286088629.0 | 33.9176 | 0.97447 | 78877331397.0 | 593416976.0 | 0.553986 | 98.90282933333333 | 39.569478333333336 | |||||||||
| NTC_0001_0001_A23WJ53LT4_1 | 9999000000.0 | 9495.0 | 3598.0 | 0.510006 | 0.123402 | 3154.0 | 0.138554 | 0.342105 | 0.279645 | 0.657895 | 437.0 | 221.0 | 882.0 | 425.0 | 0.000785 | 0.0 | 0.0 | 0.0 | 0.917845 | 0.0 | Skipped | N/A | 85.8 | 31.0 | 0.0 | 0.6 | 0.6 | 0.0 | 0.0 | 1.4 | 1.06 | 0.0 | 53 | 69.457692 | 0.251843 | 0.09179999999999999 | 51.144400000000005 | 6.036154860733959 | 18.84 | 339.0 | 43.403000000000006 | 0.867032 | 328379.0 | 3598.0 | 0.686098 | 3.1517721053277032 | 50.938173408784316 |
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