File Info
- Filename
- FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0019/A23WJ53LT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.FusionInspector.fusions.abridged.tsv
- Size
- 7.9 KB
- Workflow Run
- dev_rna_exp0019_2-73d51683
- Published
- Jun 08, 2026 4:59 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| TMPRSS2--ERG | 4123 | 0 | 4123.00 | 0.00 | TMPRSS2^ENSG00000184012.14 | 4652 | chr21:41508081:- | ERG^ENSG00000157554.19 | 28751 | chr21:38584945:- | ONLY_REF_SPLICE | YES | 0 | 50 | 4124.00 | 80.86 | GT | 1.6895 | AG | 1.9219 | 13.8995 | 1104 | 0 |
| FGFR3--TACC3 | 3715 | 8 | 3715.00 | 8.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 27590 | chr4:1739702:+ | ONLY_REF_SPLICE | YES | 58 | 2770 | 63.12 | 1.34 | GT | 1.8892 | AG | 1.7819 | 12.5511 | 627 | 0 |
| TPM3--NTRK1 | 1148 | 3 | 1148.00 | 3.00 | TPM3^ENSG00000143549.21 | 13389 | chr1:154170400:- | NTRK1^ENSG00000198400.13 | 42070 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 8237 | 28 | 0.14 | 39.72 | GT | 1.9329 | AG | 1.6895 | 3.8803 | 355 | 0 |
| TPM3--NTRK1 | 7 | 0 | 7.00 | 0.00 | TPM3^ENSG00000143549.21 | 11701 | chr1:154172088:- | NTRK1^ENSG00000198400.13 | 42403 | chr1:156874904:+ | INCL_NON_REF_SPLICE | YES | 7858 | 149 | 0.00 | 0.05 | AT | 1.8295 | CC | 1.7465 | 0.0236 | 324 | 0 |
| LMNA--NTRK1 | 1025 | 7 | 1025.00 | 6.99 | LMNA^ENSG00000160789.23 | 17733 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | 40289 | chr1:156874906:+ | ONLY_REF_SPLICE | YES | 2893 | 209 | 0.36 | 4.92 | GT | 1.7465 | AG | 1.5058 | 3.4791 | 947 | 0 |
| LMNA--NTRK1 | 6 | 2 | 6.00 | 0.01 | LMNA^ENSG00000160789.23 | 17728 | chr1:156130768:+ | NTRK1^ENSG00000198400.13 | 40292 | chr1:156874909:+ | INCL_NON_REF_SPLICE | NO | 2975 | 220 | 0.00 | 0.04 | CC | 1.5546 | TC | 1.4566 | 0.0202 | 943 | 0 |
| ETV6--NTRK3 | 784 | 4 | 784.00 | 4.00 | ETV6^ENSG00000139083.11 | 11237 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | 46238 | chr15:87940753:- | ONLY_REF_SPLICE | YES | 2778 | 8 | 0.28 | 87.67 | GT | 1.7819 | AG | 1.9656 | 2.6565 | 1252 | 0 |
| FGFR3--BAIAP2L1 | 665 | 1 | 665.00 | 1.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | 16927 | chr7:98362432:- | ONLY_REF_SPLICE | YES | 57 | 46 | 11.50 | 14.19 | GT | 1.8892 | AG | 1.8062 | 2.2453 | 1171 | 0 |
| NCOA4--RET | 598 | 3 | 598.00 | 3.00 | NCOA4^ENSG00000266412.6 | 9075 | chr10:46012883:- | RET^ENSG00000165731.20 | 30127 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 2280 | 262 | 0.26 | 2.29 | GT | 1.9086 | AG | 1.8323 | 2.0261 | 5144 | 0 |
| CCDC6--RET | 569 | 6 | 569.00 | 6.00 | CCDC6^ENSG00000108091.11 | 1435 | chr10:59906122:- | RET^ENSG00000165731.20 | 31587 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 2168 | 262 | 0.27 | 2.19 | GT | 1.8892 | AG | 1.8323 | 1.9384 | 2092 | 0 |
| KIF5B--RET | 455 | 4 | 455.00 | 4.00 | KIF5B^ENSG00000170759.11 | 19977 | chr10:32017143:- | RET^ENSG00000165731.20 | 38832 | chr10:43114480:+ | ONLY_REF_SPLICE | YES | 1335 | 10 | 0.34 | 41.82 | GT | 1.9656 | AG | 1.9656 | 1.5474 | 3178 | 0 |
| EML4--ALK | 402 | 0 | 402.00 | 0.00 | EML4^ENSG00000143924.19 | 17400 | chr2:42295516:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 621 | 37 | 0.65 | 10.61 | GT | 1.6895 | AG | 1.9086 | 1.3552 | 1550 | 0 |
| AC015911.9--SLFN12L | 373 | 24 | 373.00 | 21.04 | AC015911.9^ENSG00000286030.2 | 1691 | chr17:35522279:- | SLFN12L^ENSG00000205045.11 | 6142 | chr17:35480195:- | ONLY_REF_SPLICE | YES | 0 | 414 | 398.00 | 0.96 | GT | 1.9329 | AG | 1.8892 | 1.3284 | 533 | 0 |
| AC015911.9--SLFN12L | 159 | 8 | 159.00 | 2.25 | AC015911.9^ENSG00000286030.2 | 1691 | chr17:35522279:- | SLFN12L^ENSG00000286065.2 | 8152 | chr17:35478185:- | ONLY_REF_SPLICE | YES | 0 | 593 | 168.00 | 0.28 | GT | 1.9329 | AG | 1.9329 | 0.5436 | 1380 | 0 |
| AC015911.9--SLFN12L | 8 | 24 | 8.00 | 0.45 | AC015911.9^ENSG00000286030.2 | 1691 | chr17:35522279:- | SLFN12L^ENSG00000205045.11 | 4635 | chr17:35487914:- | INCL_NON_REF_SPLICE | YES | 0 | 0 | 33.00 | 33.00 | GT | 1.9329 | AG | 1.7819 | 0.0285 | 1749 | 0 |
| AC015911.9--SLFN12L | 10 | 5 | 10.00 | 0.09 | AC015911.9^ENSG00000286030.2 | 1691 | chr17:35522279:- | SLFN12L^ENSG00000205045.11 | 9263 | chr17:35475485:- | ONLY_REF_SPLICE | YES | 0 | 759 | 16.00 | 0.02 | GT | 1.9329 | AG | 1.7968 | 0.034 | 508 | 0 |
| AC015911.9--SLFN12L | 3 | 24 | 3.00 | 0.17 | AC015911.9^ENSG00000286030.2 | 1691 | chr17:35522279:- | SLFN12L^ENSG00000205045.11 | 4577 | chr17:35487972:- | INCL_NON_REF_SPLICE | YES | 0 | 0 | 28.00 | 28.00 | GT | 1.9329 | AG | 1.9219 | 0.0107 | 1803 | 0 |
| AC015911.9--SLFN12L | 3 | 0 | 3.00 | 0.00 | AC015911.9^ENSG00000286030.2 | 1691 | chr17:35522279:- | SLFN12L^ENSG00000205045.11 | 12060 | chr17:35464662:- | ONLY_REF_SPLICE | YES | 0 | 8 | 4.00 | 0.44 | GT | 1.9329 | AG | 1.2419 | 0.0101 | 2031 | 0 |
| SLC45A3--BRAF | 379 | 0 | 379.00 | 0.00 | SLC45A3^ENSG00000158715.6 | 1116 | chr1:205680394:- | BRAF^ENSG00000157764.14 | 25172 | chr7:140794467:- | ONLY_REF_SPLICE | YES | 2 | 1407 | 126.67 | 0.27 | GT | 1.5628 | AG | 1.7465 | 1.2777 | 2599 | 0 |
| SLC34A2--ROS1 | 287 | 8 | 287.00 | 8.00 | SLC34A2^ENSG00000157765.13 | 6084 | chr4:25664330:+ | ROS1^ENSG00000047936.11 | 58025 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 0 | 17 | 296.00 | 16.44 | GT | 1.8892 | AG | 1.7465 | 0.9945 | 999 | 0 |
| EGFR--SEPTIN14 | 279 | 5 | 279.00 | 5.00 | EGFR^ENSG00000146648.19 | 30734 | chr7:55200413:+ | SEPTIN14^ENSG00000154997.9 | 54769 | chr7:55796092:- | ONLY_REF_SPLICE | YES | 6 | 23 | 40.71 | 11.88 | GT | 1.8892 | AG | 1.9899 | 0.9575 | 658 | 0 |
| PAX8--PPARG | 249 | 0 | 249.00 | 0.00 | PAX8^ENSG00000125618.18 | 9714 | chr2:113235394:- | PPARG^ENSG00000132170.23 | 31404 | chr3:12379704:+ | ONLY_REF_SPLICE | YES | 61 | 13 | 4.03 | 17.86 | GT | 1.8295 | AG | 1.9329 | 0.8394 | 1923 | 0 |
| CD74--ROS1 | 226 | 5 | 226.00 | 4.98 | CD74^ENSG00000019582.16 | 4990 | chr5:150404680:- | ROS1^ENSG00000047936.11 | 48731 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 27479 | 17 | 0.01 | 12.89 | GT | 1.7819 | AG | 1.7465 | 0.7787 | 2407 | 0 |
| CD74--ROS1 | 5 | 1 | 5.00 | 0.02 | CD74^ENSG00000019582.16 | 4989 | chr5:150404681:- | ROS1^ENSG00000047936.11 | 48793 | chr6:117324353:- | INCL_NON_REF_SPLICE | YES | 29084 | 158 | 0.00 | 0.04 | GG | 1.7819 | TT | 1.9329 | 0.017 | 2378 | 0 |
| TFG--NTRK1 | 213 | 1 | 213.00 | 1.00 | TFG^ENSG00000114354.15 | 9135 | chr3:100732672:+ | NTRK1^ENSG00000198400.13 | 37655 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 1514 | 28 | 0.14 | 7.41 | GT | 1.9329 | AG | 1.6895 | 0.7215 | 883 | 0 |
| STX16--NPEPL1 | 188 | 4 | 188.00 | 3.95 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1234 | 186 | 0.16 | 1.03 | GT | 1.7968 | AG | 1.8256 | 0.6471 | 1940 | 0 |
| STX16--NPEPL1 | 9 | 1 | 9.00 | 0.05 | STX16^ENSG00000124222.22 | 7774 | chr20:58671297:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1451 | 186 | 0.01 | 0.06 | GT | 1.8062 | AG | 1.8256 | 0.0305 | 2729 | 0 |
| STX16--NPEPL1 | 2 | 0 | 2.00 | 0.00 | STX16^ENSG00000124222.22 | 1835 | chr20:58652087:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 2523 | 186 | 0.00 | 0.02 | GT | 1.9899 | AG | 1.8256 | 0.0067 | 1258 | 0 |
| TVP23C--CDRT4 | 84 | 2 | 84.00 | 1.29 | TVP23C^ENSG00000175106.17 | 14926 | chr17:15503098:- | CDRT4^ENSG00000239704.11 | 22624 | chr17:15440285:- | INCL_NON_REF_SPLICE | YES | 187 | 2 | 0.46 | 29.00 | GT | 1.9329 | AG | 1.9899 | 0.2875 | 1215 | 0 |
| TVP23C--CDRT4 | 23 | 2 | 23.00 | 0.35 | TVP23C^ENSG00000175106.17 | 12676 | chr17:15516419:- | CDRT4^ENSG00000239704.11 | 22624 | chr17:15440285:- | ONLY_REF_SPLICE | YES | 27 | 2 | 0.93 | 8.67 | GT | 1.8892 | AG | 1.9899 | 0.0787 | 1949 | 0 |
| TVP23C--CDRT4 | 22 | 1 | 22.00 | 0.17 | TVP23C^ENSG00000175106.17 | 14926 | chr17:15503098:- | CDRT4^ENSG00000239704.11 | 23702 | chr17:15438200:- | INCL_NON_REF_SPLICE | YES | 187 | 25 | 0.13 | 0.92 | GT | 1.9329 | AG | 1.6402 | 0.0748 | 137 | 0 |
| TVP23C--CDRT4 | 21 | 1 | 21.00 | 0.16 | TVP23C^ENSG00000175106.17 | 7982 | chr17:15540433:- | CDRT4^ENSG00000239704.11 | 22624 | chr17:15440285:- | ONLY_REF_SPLICE | YES | 536 | 2 | 0.04 | 7.67 | GT | 1.8323 | AG | 1.9899 | 0.0713 | 2126 | 0 |
| TVP23C--CDRT4 | 15 | 0 | 15.00 | 0.00 | TVP23C^ENSG00000175106.17 | 7982 | chr17:15540433:- | CDRT4^ENSG00000239704.11 | 23702 | chr17:15438200:- | ONLY_REF_SPLICE | YES | 536 | 25 | 0.03 | 0.62 | GT | 1.8323 | AG | 1.6402 | 0.0506 | 1363 | 0 |
| TVP23C--CDRT4 | 2 | 0 | 2.00 | 0.00 | TVP23C^ENSG00000175106.17 | 6853 | chr17:15545785:- | CDRT4^ENSG00000239704.11 | 22624 | chr17:15440285:- | ONLY_REF_SPLICE | YES | 333 | 2 | 0.01 | 1.00 | GT | 1.9086 | AG | 1.9899 | 0.0067 | 1774 | 0 |
| TVP23C--CDRT4 | 1 | 2 | 1.00 | 0.02 | TVP23C^ENSG00000175106.17 | 12676 | chr17:15516419:- | CDRT4^ENSG00000239704.11 | 21051 | chr17:15453085:- | ONLY_REF_SPLICE | NO | 27 | 0 | 0.14 | 4.00 | GT | 1.8892 | AG | 1.8892 | 0.0035 | 2842 | 0 |
| TVP23C--CDRT4 | 1 | 1 | 1.00 | 0.01 | TVP23C^ENSG00000175106.17 | 12676 | chr17:15516419:- | CDRT4^ENSG00000239704.11 | 23702 | chr17:15438200:- | ONLY_REF_SPLICE | YES | 27 | 25 | 0.11 | 0.12 | GT | 1.8892 | AG | 1.6402 | 0.0034 | 873 | 0 |
| TLK2--AC240565.1 | 78 | 1 | 76.01 | 1.00 | TLK2^ENSG00000146872.18 | 17137 | chr17:62560126:+ | AC240565.1^ENSG00000280136.2 | 41242 | chr17:106864:- | ONLY_REF_SPLICE | YES | 607 | 29 | 0.13 | 2.67 | GT | 1.8892 | AG | 1.8892 | 0.2596 | 1734 | 0 |
| TLK2P1--AC110079.1 | 54 | 0 | 50.99 | 0.00 | TLK2P1^ENSG00000226049.3 | 1830 | chr17:34039043:- | AC110079.1^ENSG00000260404.3 | 8316 | chr4:118595912:+ | INCL_NON_REF_SPLICE | YES | 64 | 148 | 0.85 | 0.37 | GT | 1.7465 | AG | 1.8892 | 0.1719 | 311 | 0 |
| EFL1--GOLGA6L11P | 9 | 0 | 9.00 | 0.00 | EFL1^ENSG00000140598.15 | 16923 | chr15:82214717:- | GOLGA6L11P^ENSG00000223698.3 | 29147 | chrY:24169914:+ | ONLY_REF_SPLICE | YES | 292 | 0 | 0.03 | 10.00 | GT | 1.9086 | AG | 1.5058 | 0.0303 | 2639 | 0 |
40 rows